Mon Mar 17 02:00:18 UTC 2025 I: starting to build seqan-raptor/trixie/armhf on jenkins on '2025-03-17 02:00' Mon Mar 17 02:00:18 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_31/13623/console.log Mon Mar 17 02:00:18 UTC 2025 I: Downloading source for trixie/seqan-raptor=3.0.1+ds-9 --2025-03-17 02:00:18-- http://deb.debian.org/debian/pool/main/s/seqan-raptor/seqan-raptor_3.0.1%2bds-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2694 (2.6K) [text/prs.lines.tag] Saving to: ‘seqan-raptor_3.0.1+ds-9.dsc’ 0K .. 100% 389M=0s 2025-03-17 02:00:18 (389 MB/s) - ‘seqan-raptor_3.0.1+ds-9.dsc’ saved [2694/2694] Mon Mar 17 02:00:18 UTC 2025 I: seqan-raptor_3.0.1+ds-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-raptor Binary: seqan-raptor, seqan-raptor-doc Architecture: any all Version: 3.0.1+ds-9 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/raptor Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/seqan-raptor Vcs-Git: https://salsa.debian.org/med-team/seqan-raptor.git Testsuite: autopkgtest Testsuite-Triggers: cmake, cwltool, g++, libgtest-dev, libseqan3-dev, libsimde-dev, libxxhash-dev, libyaml-cpp-dev, nodejs, patch, pkg-config, python3-setuptools Build-Depends: debhelper-compat (= 13), architecture-is-little-endian, architecture-is-64-bit, cmake, libseqan3-dev (>= 3.4.0~rc.3), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkgconf, doxygen , cppreference-doc-en-html , texlive-font-utils , texlive-latex-base , texlive-latex-recommended , texlive-latex-extra , texlive-plain-generic , texlive-fonts-recommended , ghostscript Package-List: seqan-raptor deb science optional arch=any seqan-raptor-doc deb doc optional arch=all profile=!nodoc Checksums-Sha1: a298b4c8b0b5ab15c49315e97dee322b95069357 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz ca3a97052dff869ee5644b109c4701a3a817cd0e 10772 seqan-raptor_3.0.1+ds-9.debian.tar.xz Checksums-Sha256: 3fb5f987f3c0e678d5de41ab3f9f66eae37ba5993edb294caa9e8f2c6132a55d 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz cda3c8439de62518de37f4526eeb8d69ffdb4b4983a18242080ee265243d3b9c 10772 seqan-raptor_3.0.1+ds-9.debian.tar.xz Files: 650d23e7c16c308dcc95dbc6d302df1f 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz 314b5d2cca0f3caaa08c9c8d1366c263 10772 seqan-raptor_3.0.1+ds-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmergxoACgkQPCZ2P2xn 5uJLlA/+MJkhQMZWOh3Ys20ozURHfD/HRTWnf/oviWnCeV0R1co5JesN26fVyWU7 fs/u1qX+8hQ/QrFfj/fjBswzGOyGf1Vc4xqMq6h7SijvbbFyA4hnwiqS+RSfM6XR gJSrbjDYmRsQydwtxHRGW2kvqYYZL4IqYiGyAaUUu7oBt9qPYziHbN8Nq2DE6lw1 uTpVyyBeesPtLHz0Iy8saet6Kp8R0IHpLf6b+XviWQRIv9IvFQoMq6G7Fbo3nyMD cbm1Vgd4b5mP3ELIhz74Z6T2Bk1KoNPSMqJUSOWMasEETSda1cUhyNhf2cFISNbz 0m9vIgqZ9Yt/JW9G8ydNpMGzmX2kpK9bN1+Koz5pDn0UVQpSdKb0IPWIeULb25Sw DoJlX4lQKKftL3KMuOkzPKDjRyxjOlyfmFM9BIzBvj/dzSvZVG/iYMz13zeJLiso 6/fFTDFGBanQtD1gEPrKSOzxXi4d40cnLiz5YuojCl9EXpltVSSqWWJdkhf0XGlG DsNHoTQFZndqN1WOV2o0PqZ7jjzu1uNa6xOiZUAJas/nbwEDP+UgChtF9sID+kgc aURjcbN2uR5UUEJj3nwFARZCvOYTchy4DboOMFfL7vKta4J4SxiLbxVXhq3a85KX UvlGfmeMNADHB7tYCDVRnFqaa//wMG7iknynL6GpCFwUe/ewqiQ= =7PHY -----END PGP SIGNATURE----- Mon Mar 17 02:00:18 UTC 2025 I: Checking whether the package is not for us Mon Mar 17 02:00:18 UTC 2025 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Mon Mar 17 02:00:19 UTC 2025 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Mon Mar 17 02:01:06 UTC 2025 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Mar 16 14:00:29 -12 2025 I: pbuilder-time-stamp: 1742176829 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-raptor_3.0.1+ds-9.dsc] I: copying [./seqan-raptor_3.0.1+ds.orig.tar.xz] I: copying [./seqan-raptor_3.0.1+ds-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-9.dsc: unsupported subcommand dpkg-source: info: extracting seqan-raptor in seqan-raptor-3.0.1+ds dpkg-source: info: unpacking seqan-raptor_3.0.1+ds.orig.tar.xz dpkg-source: info: unpacking seqan-raptor_3.0.1+ds-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy dpkg-source: info: applying chopper_no_test dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying debian_xxhash dpkg-source: info: applying debian_cppreference dpkg-source: info: applying doxygen_update dpkg-source: info: applying debian_seqan340 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/16300/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='b5a09f2e2fbc4b74b3c640dc230544a5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='16300' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BedNgu3h/pbuilderrc_WuXH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BedNgu3h/b1 --logfile b1/build.log seqan-raptor_3.0.1+ds-9.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-31-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/16300/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-little-endian, architecture-is-64-bit, cmake, libseqan3-dev (>= 3.4.0~rc.3), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkgconf, doxygen, cppreference-doc-en-html, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19528 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.4.0~rc.3); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libyaml-cpp-dev; however: Package libyaml-cpp-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on cppreference-doc-en-html; however: Package cppreference-doc-en-html is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cppreference-doc-en-html{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} googletest{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libcereal-dev{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libgtest-dev{a} libharfbuzz0b{a} libice6{a} libicu72{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libnghttp3-9{a} libopenjp2-7{a} libp11-kit0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libssh2-1t64{a} libsynctex2{a} libtasn1-6{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libxxhash-dev{a} libyaml-cpp-dev{a} libyaml-cpp0.8{a} libz3-4{a} libzzip-0-13t64{a} lynx{a} lynx-common{a} m4{a} man-db{a} media-types{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates dbus default-jre dvisvgm fonts-droid-fallback krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lmodern mailcap ps2eps psmisc publicsuffix ruby shared-mime-info tex-gyre tipa tk x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 261 MB of archives. After unpacking 1095 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cppreference-doc-en-html{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} googletest{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libcereal-dev{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libgtest-dev{a} libharfbuzz0b{a} libice6{a} libicu72{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libnghttp3-9{a} libopenjp2-7{a} libp11-kit0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libssh2-1t64{a} libsynctex2{a} libtasn1-6{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libxxhash-dev{a} libyaml-cpp-dev{a} libyaml-cpp0.8{a} libz3-4{a} libzzip-0-13t64{a} lynx{a} lynx-common{a} m4{a} man-db{a} media-types{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates dbus default-jre dvisvgm fonts-droid-fallback krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lmodern mailcap ps2eps psmisc publicsuffix ruby shared-mime-info tex-gyre tipa tk x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 261 MB of archives. After unpacking 1095 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/16300 and its subdirectories Mon Mar 17 02:01:10 UTC 2025 W: No second build log, what happened? Mon Mar 17 02:01:10 UTC 2025 W: Downloading the build dependencies failed Mon Mar 17 02:01:10 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Mar 17 02:01:10 UTC 2025 W: Network problems are automatically rescheduled after some hours.