Sun Feb 2 05:44:08 UTC 2025 I: starting to build soapsnp/trixie/armhf on jenkins on '2025-02-02 05:43' Sun Feb 2 05:44:08 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_13/9218/console.log Sun Feb 2 05:44:08 UTC 2025 I: Downloading source for trixie/soapsnp=1.03-5 --2025-02-02 05:44:08-- http://deb.debian.org/debian/pool/main/s/soapsnp/soapsnp_1.03-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1961 (1.9K) [text/prs.lines.tag] Saving to: ‘soapsnp_1.03-5.dsc’ 0K . 100% 338M=0s 2025-02-02 05:44:08 (338 MB/s) - ‘soapsnp_1.03-5.dsc’ saved [1961/1961] Sun Feb 2 05:44:08 UTC 2025 I: soapsnp_1.03-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: soapsnp Binary: soapsnp Architecture: any Version: 1.03-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://soap.genomics.org.cn/soapsnp.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/soapsnp Vcs-Git: https://salsa.debian.org/med-team/soapsnp.git Build-Depends: debhelper-compat (= 13), libboost-iostreams-dev, zlib1g-dev Package-List: soapsnp deb science optional arch=any Checksums-Sha1: f151594b5984c3c44ef2b61cebb17e0d97a7576e 38151 soapsnp_1.03.orig.tar.gz 5227653b21fa0fe661ce16d85259bcbb26bce0c6 3596 soapsnp_1.03-5.debian.tar.xz Checksums-Sha256: 68aab997285c4fece0f2900eb89df90edc7d8596fd6bc637bd922bbc8563f6d0 38151 soapsnp_1.03.orig.tar.gz 6498b123f0deeca5fe60e865a560027c29c2dc72ca152aff90f3d00d4340c301 3596 soapsnp_1.03-5.debian.tar.xz Files: 8d69e196013657357ff840b611762ebc 38151 soapsnp_1.03.orig.tar.gz 3e654495fdd080161728c3a88ee3311a 3596 soapsnp_1.03-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgEEcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE5cQ/7BYaVV2Zd+pRU0Siqmw30rZ/P+mmzW0pK RieC8kPuF6LwzeQRqhk6Rtn5QBcnvLoiqm4eWFqYdjq59/CFtQSCyl+jpZdNIlia WScgC7V+ZKVMUcSi1QVNm9fQebquG3c4VvYu18gj8cWWiqGYfxCi4dkPNW2EglKV cCuhX34bmvWI2ZysqrjQ8bziPvE5LXBcEiGc/7VN1DVlVLI6Qyea34Ir2Vf1HisQ fhtjv9TaSqiYHjM37Ar6gmeNtVFMvUAr9ysOxmewyGIanMAU1zbIRQncXmdYHkqF tZutjfVBG1YFjq6JOVSSQW+SyZbLxV6Rtu3XVLSadS2zG8M6yPRFek4jvdgMuXCZ 5N5MxT4QvqYWiLmFZz0iT8v88TDMtZ+JHkUVBklrMtYj1uJWkCrS/J68RCvBtsRr 4QBYHZUaC2VM10NkI59KRqZSimyCTiN036tJwIaLixt4jrQTQHnfzhBaUZRPF5R0 pZlPQM4RY4aQoMMS1eE/8KluqRnf5z5/jkAD6UP67LlzO014x+qVcDyZ6GJxWkTj +MuD/ZIlgVwrIBla2HRTNXnFSYouEgb+wTdIt9dKTOGd2SNTAoAhEsdFgPR58J0X 6kSXh30D50VGqeDiOOEsSKmOY8wlHB5xuNe3PZlRCo7s0BBlIyQONSGT07G19K/P 25HZPjUPi7I= =L281 -----END PGP SIGNATURE----- Sun Feb 2 05:44:08 UTC 2025 I: Checking whether the package is not for us Sun Feb 2 05:44:08 UTC 2025 I: Starting 1st build on remote node ff64a-armhf-rb.debian.net. Sun Feb 2 05:44:08 UTC 2025 I: Preparing to do remote build '1' on ff64a-armhf-rb.debian.net. Sun Feb 2 05:47:07 UTC 2025 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 1 17:44:16 -12 2025 I: pbuilder-time-stamp: 1738475056 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [soapsnp_1.03-5.dsc] I: copying [./soapsnp_1.03.orig.tar.gz] I: copying [./soapsnp_1.03-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./soapsnp_1.03-5.dsc: unsupported subcommand dpkg-source: info: extracting soapsnp in soapsnp-1.03 dpkg-source: info: unpacking soapsnp_1.03.orig.tar.gz dpkg-source: info: unpacking soapsnp_1.03-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/29579/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='45e308363f4f433fa6935a14cc658657' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='29579' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.v3AL7UxJ/pbuilderrc_TewW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.v3AL7UxJ/b1 --logfile b1/build.log soapsnp_1.03-5.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/29579/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-iostreams-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19573 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 42.5 MB of archives. After unpacking 291 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-2 [84.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 22 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-6 [189 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-4 [10.6 MB] Get: 33 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-4 [308 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-6 [10.1 MB] Get: 35 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-4 [337 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libboost-iostreams1.83-dev armhf 1.83.0-4 [261 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libboost-iostreams-dev armhf 1.83.0.2+b2 [3568 B] Get: 38 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Fetched 42.5 MB in 1s (36.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19573 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_armhf.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-2_armhf.deb ... Unpacking bsdextrautils (2.40.4-2) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_armhf.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libunistring5:armhf. Preparing to unpack .../23-libunistring5_1.3-1_armhf.deb ... Unpacking libunistring5:armhf (1.3-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-6_armhf.deb ... Unpacking libicu72:armhf (72.1-6) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_armhf.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../30-icu-devtools_72.1-6_armhf.deb ... Unpacking icu-devtools (72.1-6) ... Selecting previously unselected package libboost1.83-dev:armhf. Preparing to unpack .../31-libboost1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-regex1.83.0:armhf. Preparing to unpack .../32-libboost-regex1.83.0_1.83.0-4_armhf.deb ... Unpacking libboost-regex1.83.0:armhf (1.83.0-4) ... Selecting previously unselected package libicu-dev:armhf. Preparing to unpack .../33-libicu-dev_72.1-6_armhf.deb ... Unpacking libicu-dev:armhf (72.1-6) ... Selecting previously unselected package libboost-regex1.83-dev:armhf. Preparing to unpack .../34-libboost-regex1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost-regex1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-iostreams1.83-dev:armhf. Preparing to unpack .../35-libboost-iostreams1.83-dev_1.83.0-4_armhf.deb ... Unpacking libboost-iostreams1.83-dev:armhf (1.83.0-4) ... Selecting previously unselected package libboost-iostreams-dev:armhf. Preparing to unpack .../36-libboost-iostreams-dev_1.83.0.2+b2_armhf.deb ... Unpacking libboost-iostreams-dev:armhf (1.83.0.2+b2) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../37-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libboost1.83-dev:armhf (1.83.0-4) ... Setting up libicu72:armhf (72.1-6) ... Setting up bsdextrautils (2.40.4-2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:armhf (1.83.0-4) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:armhf (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up icu-devtools (72.1-6) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libicu-dev:armhf (72.1-6) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-regex1.83-dev:armhf (1.83.0-4) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libboost-iostreams1.83-dev:armhf (1.83.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libboost-iostreams-dev:armhf (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/soapsnp-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapsnp_1.03-5_source.changes dpkg-buildpackage: info: source package soapsnp dpkg-buildpackage: info: source version 1.03-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j5 clean make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' rm -f *.o soapsnp make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j5 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o call_genotype.o call_genotype.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chromosome.o chromosome.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o normal_dis.o normal_dis.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prior.o prior.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rank_sum.o rank_sum.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.cc In file included from /usr/include/c++/14/map:62, from soap_snp.h:7, from chromosome.cc:1: /usr/include/c++/14/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair}; _Key = long long unsigned int; _Tp = Snp_info*; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'std::__enable_if_t<((bool)std::is_constructible, _Pair>::value), std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Alloc>::rebind >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair; _Key = long long unsigned int; _Tp = Snp_info*; _Compare = std::less; _Alloc = std::allocator >]' at /usr/include/c++/14/bits/stl_map.h:859:27, inlined from 'int Chr_info::insert_snp(std::__cxx11::basic_string::size_type, Snp_info&)' at chromosome.cc:53:28: /usr/include/c++/14/bits/stl_map.h:640:45: note: parameter passing for argument of type 'std::map::const_iterator' {aka 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator'} changed in GCC 7.1 640 | return _M_t._M_emplace_hint_unique(__pos, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 641 | std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o -o soapsnp -lz -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/soapsnp/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'soapsnp-dbgsym' in '../soapsnp-dbgsym_1.03-5_armhf.deb'. dpkg-deb: building package 'soapsnp' in '../soapsnp_1.03-5_armhf.deb'. dpkg-genbuildinfo --build=binary -O../soapsnp_1.03-5_armhf.buildinfo dpkg-genchanges --build=binary -O../soapsnp_1.03-5_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/29579 and its subdirectories I: Current time: Sat Feb 1 17:47:01 -12 2025 I: pbuilder-time-stamp: 1738475221 Sun Feb 2 05:47:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt32b-armhf-rb.debian.net. Sun Feb 2 05:47:09 UTC 2025 I: Preparing to do remote build '2' on virt32b-armhf-rb.debian.net. Sun Feb 2 05:49:56 UTC 2025 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. Sun Feb 2 05:50:00 UTC 2025 I: soapsnp_1.03-5_armhf.changes: Format: 1.8 Date: Sun, 05 Feb 2023 20:49:41 +0100 Source: soapsnp Binary: soapsnp soapsnp-dbgsym Architecture: armhf Version: 1.03-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: soapsnp - resequencing utility that can assemble consensus sequence of geno Changes: soapsnp (1.03-5) unstable; urgency=medium . * Team upload. * Upstream download vanished * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 3ebd9cbb2181bdddd5704a6c93fe88e223bb1c73 388056 soapsnp-dbgsym_1.03-5_armhf.deb 1e38ab4e8f0ab063e3db12dba25f7cfc867be944 5241 soapsnp_1.03-5_armhf.buildinfo bd1700d352f0c2900f3b9b325169bd37184bdf3d 42760 soapsnp_1.03-5_armhf.deb Checksums-Sha256: b0851e5ebe2543cab0f7614db6d107396957aab36605edfbf1463e002b6e8150 388056 soapsnp-dbgsym_1.03-5_armhf.deb 4255bc35dbb1845e0c86ee8aabfb7752aa2a935d4a0d0fb89d3fcc1855b0e697 5241 soapsnp_1.03-5_armhf.buildinfo 7d3a4a686b0f45ebadcbcac9c2bbea452c1834ac0d884bfadd72994d09e17f0c 42760 soapsnp_1.03-5_armhf.deb Files: a78191f1ce60443c2804ae6c9038d45b 388056 debug optional soapsnp-dbgsym_1.03-5_armhf.deb e9abbc651980b5191fe402d041b5aa7b 5241 science optional soapsnp_1.03-5_armhf.buildinfo f2b67aa9cdfb03823152e9e284fff208 42760 science optional soapsnp_1.03-5_armhf.deb Sun Feb 2 05:50:01 UTC 2025 I: diffoscope 287 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_13-9218.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.v3AL7UxJ/soapsnp_1.03-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.v3AL7UxJ/soapsnp_1.03-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.v3AL7UxJ/soapsnp_1.03-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.v3AL7UxJ/b1/soapsnp_1.03-5_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.v3AL7UxJ/b2/soapsnp_1.03-5_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 239ms CPU time consumed: 220ms Sun Feb 2 05:50:02 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists. Sun Feb 2 05:50:02 UTC 2025 I: soapsnp from trixie built successfully and reproducibly on armhf. Sun Feb 2 05:50:03 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Feb 2 05:50:03 UTC 2025 I: Submitting 8.0K b1/soapsnp_1.03-5_armhf.buildinfo.asc Sun Feb 2 05:50:04 UTC 2025 I: Submitting 8.0K b2/soapsnp_1.03-5_armhf.buildinfo.asc Sun Feb 2 05:50:05 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Feb 2 05:50:05 UTC 2025 I: Done submitting .buildinfo files. Sun Feb 2 05:50:05 UTC 2025 I: Removing signed soapsnp_1.03-5_armhf.buildinfo.asc files: removed './b1/soapsnp_1.03-5_armhf.buildinfo.asc' removed './b2/soapsnp_1.03-5_armhf.buildinfo.asc'