Mon Feb 3 18:48:52 UTC 2025 I: starting to build spoa/trixie/armhf on jenkins on '2025-02-03 18:48' Mon Feb 3 18:48:52 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_19/6637/console.log Mon Feb 3 18:48:52 UTC 2025 I: Downloading source for trixie/spoa=4.1.4-2 --2025-02-03 18:48:52-- http://deb.debian.org/debian/pool/main/s/spoa/spoa_4.1.4-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2306 (2.3K) [text/prs.lines.tag] Saving to: ‘spoa_4.1.4-2.dsc’ 0K .. 100% 49.7M=0s 2025-02-03 18:48:52 (49.7 MB/s) - ‘spoa_4.1.4-2.dsc’ saved [2306/2306] Mon Feb 3 18:48:52 UTC 2025 I: spoa_4.1.4-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spoa Binary: spoa, libspoa7.0.0, libspoa-dev Architecture: any Version: 4.1.4-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/rvaser/spoa Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/spoa Vcs-Git: https://salsa.debian.org/med-team/spoa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev [any-amd64 any-i386] Package-List: libspoa-dev deb libdevel optional arch=any libspoa7.0.0 deb libs optional arch=any spoa deb science optional arch=any Checksums-Sha1: 4238e0d435b3e0df7d0b377d07f71fe463b9f836 47516 spoa_4.1.4.orig.tar.gz b6b267b927d061faad721546907cfc2fe5f8de17 8916 spoa_4.1.4-2.debian.tar.xz Checksums-Sha256: ea696650460b17881595454c2546a05905f2724927dbbf4d71f4bb8a3f6a99cd 47516 spoa_4.1.4.orig.tar.gz 4829ccc110a3b45b65ec89bf781d0b872a3b3e7d05dd0ea6f83138ea9c8b96fe 8916 spoa_4.1.4-2.debian.tar.xz Files: b8eb09427cc97cdf94602ad71828adbf 47516 spoa_4.1.4.orig.tar.gz 4b1c264b2541ae76ad230cedf82d1dbc 8916 spoa_4.1.4-2.debian.tar.xz Dgit: 42af53d79785430a8d68c815f2e48d8786ebc476 debian archive/debian/4.1.4-2 https://git.dgit.debian.org/spoa -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmahXg8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpt0BAAqboi+lvHXH3U2zN6ek60fTDEorTx anmKlDgzk57ZTv+7woccGHJ+43o5q27k7AYLjKiAESK4wWIt3p8z0Vc/B2sKeN/A qKyIyZ8fkfH9CZVQzzZH7BFqRl4SYTBiaoXcatvUYKiu6/nE62NE+EvR2pJUP7I2 UsjVW7I1sJyrZgnYrA30KjMo6y4W70l+CP4oVRJwd2D7HCyNXCXG8o4nl6592rxl dtEpLPhQXzL2MzlrLyefGCEGsASQ513JO5B0yBODmY/ZGrkw0iFwx274fi2Qw8Hp GMOp037AbyCA7KB9vT+OSCNXH5wimvluTKQdRiOne5A3+/urczhbRJ/nJa/TXb5d kCAdV1+j7a+wYBU4PNMpAWy27WCicSUsYjJAqivdFhf963zBnGpnGhbhTKyZI9ri ju59ifnOyXHLobgIXEKQxGMIbKsdYiaKzz/YBKtT2NWWUJGdPRawMW2hBkhy1hNQ w/vkR8jizsrgYsq1G4/uWaQj6deRPVuBOOuY6VSyiWJ8ESfn9TRnZLN7JeLEfKSR LliGsaaSQcdpcYTihEMc8LXq2VUFwOlcR7YKdyZOE6ZMSGRAeACDG79Gdgq/+b7m osLwVT8a/9eIPp+p/8gaGBwAsji09K9A2NQFL9SnX9EliVcuSsB5gFo8K/n9aAmZ /EIBm5jgzqRoVF0= =w30O -----END PGP SIGNATURE----- Mon Feb 3 18:48:52 UTC 2025 I: Checking whether the package is not for us Mon Feb 3 18:48:52 UTC 2025 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Mon Feb 3 18:48:52 UTC 2025 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Mon Feb 3 18:53:11 UTC 2025 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 3 06:48:59 -12 2025 I: pbuilder-time-stamp: 1738608539 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [spoa_4.1.4-2.dsc] I: copying [./spoa_4.1.4.orig.tar.gz] I: copying [./spoa_4.1.4-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-2.dsc: unsupported subcommand dpkg-source: info: extracting spoa in spoa-4.1.4 dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz dpkg-source: info: unpacking spoa_4.1.4-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-ftbfs-gcc-10.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9105/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='30e7374946d6405ebf4c6fc1dd97647d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9105' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JJS23mlP/pbuilderrc_4Yh1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JJS23mlP/b1 --logfile b1/build.log spoa_4.1.4-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9105/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 35.8 MB of archives. After unpacking 141 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-7 [56.3 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-7 [866 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.4-2 [84.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.31.5-1 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-6 [9086 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-4 [30.3 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-4 [75.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 27 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-4 [285 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-4 [116 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8+b1 [18.6 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8+b1 [50.6 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libldap2 armhf 2.6.9+dfsg-1 [167 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.11.1-1+b1 [304 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.31.5-1 [5911 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf d-shlibs all 0.109 [11.1 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 55 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf googletest all 1.15.2-1 [514 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libbioparser-dev all 3.1.0-1 [9108 B] Get: 65 http://deb.debian.org/debian trixie/main armhf rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libcereal-dev armhf 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libgtest-dev armhf 1.15.2-1 [246 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libsimde-dev all 0.8.2-2 [467 kB] Fetched 35.8 MB in 3s (11.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_armhf.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_armhf.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.1.4-2_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.1.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FetchContent.cmake:1953 (message): Calling FetchContent_Populate(simde) is deprecated, call FetchContent_MakeAvailable(simde) instead. Policy CMP0169 can be set to OLD to allow FetchContent_Populate(simde) to be called directly for now, but the ability to call it with declared details will be removed completely in a future version. Call Stack (most recent call first): CMakeLists.txt:53 (FetchContent_Populate) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency simde to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:1978:EVAL:1 (__FetchContent_Populate) /usr/share/cmake-3.31/Modules/FetchContent.cmake:1978 (cmake_language) CMakeLists.txt:53 (FetchContent_Populate) -- Configuring done (1.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY spoa_build_executable -- Build files have been written to: /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_auto_build -O--no-parallel cd obj-arm-linux-gnueabihf && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' cd /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles/spoa.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 7%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 14%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 21%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatcher.cpp [ 28%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 35%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/version.cpp [ 42%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/spoa.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 42%] Built target spoa make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' cd /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 50%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 57%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 71%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 71%] Built target spoa_static make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' cd /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 78%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/main.cpp [ 85%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_exe.dir/link.d CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/lib: lib/libspoa.so.7.0.0 -lz make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 85%] Built target spoa_exe make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' cd /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 92%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/reproducible-path/spoa-4.1.4/test/spoa_test.cpp [100%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_test.dir/link.d CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/lib lib/libspoa.so.7.0.0 -lz /usr/lib/arm-linux-gnueabihf/libgtest_main.a /usr/lib/arm-linux-gnueabihf/libgtest.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [100%] Built target spoa_test make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' `find . -name spoa_test` Running main() from ./googletest/src/gtest_main.cc [==========] Running 22 tests from 2 test suites. [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError [ OK ] SpoaAlignmentTest.TypeError (0 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) [----------] 3 tests from SpoaAlignmentTest (0 ms total) [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear [ OK ] SpoaTest.Clear (2846 ms) [ RUN ] SpoaTest.Local [ OK ] SpoaTest.Local (1421 ms) [ RUN ] SpoaTest.LocalAffine [ OK ] SpoaTest.LocalAffine (1909 ms) [ RUN ] SpoaTest.LocalConvex [ OK ] SpoaTest.LocalConvex (3215 ms) [ RUN ] SpoaTest.LocalWithQualities [ OK ] SpoaTest.LocalWithQualities (1433 ms) [ RUN ] SpoaTest.LocalAffineWithQualities [ OK ] SpoaTest.LocalAffineWithQualities (1879 ms) [ RUN ] SpoaTest.LocalConvexWithQualities [ OK ] SpoaTest.LocalConvexWithQualities (3190 ms) [ RUN ] SpoaTest.Global [ OK ] SpoaTest.Global (1306 ms) [ RUN ] SpoaTest.GlobalAffine [ OK ] SpoaTest.GlobalAffine (1753 ms) [ RUN ] SpoaTest.GlobalConvex [ OK ] SpoaTest.GlobalConvex (3058 ms) [ RUN ] SpoaTest.GlobalWithQualities [ OK ] SpoaTest.GlobalWithQualities (1307 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities [ OK ] SpoaTest.GlobalAffineWithQualities (1750 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities [ OK ] SpoaTest.GlobalConvexWithQualities (3075 ms) [ RUN ] SpoaTest.SemiGlobal [ OK ] SpoaTest.SemiGlobal (1295 ms) [ RUN ] SpoaTest.SemiGlobalAffine [ OK ] SpoaTest.SemiGlobalAffine (1740 ms) [ RUN ] SpoaTest.SemiGlobalConvex [ OK ] SpoaTest.SemiGlobalConvex (3055 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities [ OK ] SpoaTest.SemiGlobalWithQualities (1296 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities [ OK ] SpoaTest.SemiGlobalAffineWithQualities (1740 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities [ OK ] SpoaTest.SemiGlobalConvexWithQualities (3057 ms) [----------] 19 tests from SpoaTest (40336 ms total) [----------] Global test environment tear-down [==========] 22 tests from 2 test suites ran. (40337 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel cd obj-arm-linux-gnueabihf && make -j1 install DESTDIR=/build/reproducible-path/spoa-4.1.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0 -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa_static.a -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/version.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets-release.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfig.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfigVersion.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa -- Set non-toolchain portion of runtime path of "/build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --exclude-a \ --movedev debian/tmp/usr/include/spoa usr/include \ --movedev debian/tmp/usr/lib/arm-linux-gnueabihf/cmake /usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so debian/libspoa-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf PKGDEV=libspoa-dev PKGSHL=libspoa7.0.0 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev//usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libspoa-dev//usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'spoa' in '../spoa_4.1.4-2_armhf.deb'. dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-2_armhf.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-2_armhf.deb'. dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-2_armhf.deb'. dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../spoa_4.1.4-2_armhf.buildinfo dpkg-genchanges --build=binary -O../spoa_4.1.4-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9105 and its subdirectories I: Current time: Mon Feb 3 06:53:00 -12 2025 I: pbuilder-time-stamp: 1738608780 Mon Feb 3 18:53:14 UTC 2025 I: 1st build successful. Starting 2nd build on remote node cbxi4a-armhf-rb.debian.net. Mon Feb 3 18:53:14 UTC 2025 I: Preparing to do remote build '2' on cbxi4a-armhf-rb.debian.net. Mon Feb 3 19:02:58 UTC 2025 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. Mon Feb 3 19:03:00 UTC 2025 I: spoa_4.1.4-2_armhf.changes: Format: 1.8 Date: Wed, 24 Jul 2024 21:59:08 +0200 Source: spoa Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym Architecture: armhf Version: 4.1.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libspoa-dev - SIMD partial order alignment library (development files) libspoa7.0.0 - SIMD partial order alignment library spoa - SIMD partial order alignment tool Closes: 1075532 Changes: spoa (4.1.4-2) unstable; urgency=medium . * d/libspoa7.0.0.symbols.amd64: mark some compiler symbols as optional. (Closes: #1075532) * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: f454305d182af5d10358fa57e2666d4eacad92db 9520 libspoa-dev_4.1.4-2_armhf.deb 8dd545ab49a24705d864d5e62251c9dbd228345e 676580 libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb c175ae4fbaddef21be4da7febee3f1337c789327 61660 libspoa7.0.0_4.1.4-2_armhf.deb b378499079ffa10b0d7787c0ee8fc0f6b5018770 240592 spoa-dbgsym_4.1.4-2_armhf.deb dbd6a168e27b211a9b5b0fedb192fed445249cad 7198 spoa_4.1.4-2_armhf.buildinfo d03b0c3efcd8e3c00ccb37130933b1eaa2911a3e 34908 spoa_4.1.4-2_armhf.deb Checksums-Sha256: 4f6ccfe125cf35a21c6aac0ddf5d1d3eb8ec43336764d7ab681a1bc2e5728cc1 9520 libspoa-dev_4.1.4-2_armhf.deb a873db2012687b784ecbeb500f777d6672901008caa77d44dd3c13de0eee4b65 676580 libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb afb6788150ffa0c191ae504155d012da69a751868620fa6a0db36fce0b4640e3 61660 libspoa7.0.0_4.1.4-2_armhf.deb 01f08c3251fd6c68669d24a2be19f444a4db82e2a8a4fe992dc7349f4a662a49 240592 spoa-dbgsym_4.1.4-2_armhf.deb 3eacd9834d7e8f3fd8d50354364e48e978ffdb02b3876a5c8561099bd17e5a3b 7198 spoa_4.1.4-2_armhf.buildinfo a000e6e5b49b1cbfd8e85422f190cffeb70e1c07415acfccea1b5df91bb2d4c5 34908 spoa_4.1.4-2_armhf.deb Files: c89d08644d6ac47e7c88dbcc1b0d3390 9520 libdevel optional libspoa-dev_4.1.4-2_armhf.deb daee26d44ddd6c7adb4524fd77a06e20 676580 debug optional libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb 2c2846efd9a3bda28221281c0c775752 61660 libs optional libspoa7.0.0_4.1.4-2_armhf.deb ef6a9aa813088d39a628b9f8542dbe36 240592 debug optional spoa-dbgsym_4.1.4-2_armhf.deb 077060e94a8ffa2cfadac044f2651d0d 7198 science optional spoa_4.1.4-2_armhf.buildinfo f06a4ba98a12addadfcd84c3b9e33ede 34908 science optional spoa_4.1.4-2_armhf.deb Mon Feb 3 19:03:01 UTC 2025 I: diffoscope 287 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_19-6637.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JJS23mlP/spoa_4.1.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JJS23mlP/spoa_4.1.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JJS23mlP/spoa_4.1.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JJS23mlP/b1/spoa_4.1.4-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.JJS23mlP/b2/spoa_4.1.4-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 258ms CPU time consumed: 259ms Mon Feb 3 19:03:02 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists. Mon Feb 3 19:03:02 UTC 2025 I: spoa from trixie built successfully and reproducibly on armhf. Mon Feb 3 19:03:03 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Feb 3 19:03:03 UTC 2025 I: Submitting 8.0K b1/spoa_4.1.4-2_armhf.buildinfo.asc Mon Feb 3 19:03:04 UTC 2025 I: Submitting 8.0K b2/spoa_4.1.4-2_armhf.buildinfo.asc Mon Feb 3 19:03:05 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Feb 3 19:03:05 UTC 2025 I: Done submitting .buildinfo files. Mon Feb 3 19:03:05 UTC 2025 I: Removing signed spoa_4.1.4-2_armhf.buildinfo.asc files: removed './b1/spoa_4.1.4-2_armhf.buildinfo.asc' removed './b2/spoa_4.1.4-2_armhf.buildinfo.asc'