Sat Dec 28 03:35:33 UTC 2024 I: starting to build trinculo/trixie/armhf on jenkins on '2024-12-28 03:35' Sat Dec 28 03:35:33 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_33/19567/console.log Sat Dec 28 03:35:33 UTC 2024 I: Downloading source for trixie/trinculo=0.96+dfsg-4 --2024-12-28 03:35:33-- http://deb.debian.org/debian/pool/main/t/trinculo/trinculo_0.96%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2076 (2.0K) [text/prs.lines.tag] Saving to: ‘trinculo_0.96+dfsg-4.dsc’ 0K .. 100% 295M=0s 2024-12-28 03:35:33 (295 MB/s) - ‘trinculo_0.96+dfsg-4.dsc’ saved [2076/2076] Sat Dec 28 03:35:34 UTC 2024 I: trinculo_0.96+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: trinculo Binary: trinculo Architecture: any Version: 0.96+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://sourceforge.net/projects/trinculo/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/trinculo Vcs-Git: https://salsa.debian.org/med-team/trinculo.git Testsuite: autopkgtest Testsuite-Triggers: python3-all Build-Depends: debhelper-compat (= 13), liblapack-dev Package-List: trinculo deb science optional arch=any Checksums-Sha1: ca26c603112c2607f800805e3596b03c020aaae7 61360 trinculo_0.96+dfsg.orig.tar.xz 41f0a6d865672204d3dc5fb82f891f86d4051bcd 13452 trinculo_0.96+dfsg-4.debian.tar.xz Checksums-Sha256: 51b73c31fe0ae52d96ea3f92ad4af7e9e35dba634200ad43428dc349b9b5767d 61360 trinculo_0.96+dfsg.orig.tar.xz d816557359930cc17c7961a5768a5c8ac4f5c1e2d1dc46da34fb25406666ad9a 13452 trinculo_0.96+dfsg-4.debian.tar.xz Files: 73fc14eef2714899d42f9ffb2608ddfe 61360 trinculo_0.96+dfsg.orig.tar.xz 07f92fb9e7e517661b4a58e26c195f47 13452 trinculo_0.96+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmF+7CISHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxmdoQAJDcPJVSbNfZvw8ZmUcAFBJIWqAhW6XQ iMIB5dzyLYAlvwW4kFn0i0JqPhMh2jXof/qmhJ5ye34/jOZVf/vGKv676oJtE/D3 ZeWoBx9XdOz/5U+y7C/xBJe8LrVUMzCqFIHR+MK3ebEKg2HbkECg000lcStTR5Db eTsO4NPljgPuAHT6cGaFCndyoxyMdq7nRCrnoLudQQcXWI6zJqlhdqrelWMNJjwl 2DtY+AnAktdKnomZw0SB88WFMSZGuhH+c5iI7b5odDxWnTYz8x7AGEkffX6zMSch 3lfpASK1zyxFnLr0Oe4vnrfoqdb+psAfYAzWDUsIwS4dRt8LdLxMymlEVFc1SHT5 sWlzXzH7kRwSy+qFDBOSTgYCtfhfkvKZzjF0M8++yDfT8f+Z0B+sxyTQ0ch6DEGm Y2aoTaV24SzXhsMfLZm7En7YQwX9nJndjXHnhLPlVfrrXuz3QdANV92/rFa1P5Py s8CQZ/Hxq4qz2QYxBhEHB8HAKDd+RDUCMOEI+c2+uX6ovEMop+TFsMtnfDOBzMYy 99aBxbUZp9umwgvXZzFQeifS6MhRfCINu6buL21FlEEpiAaAPpdcdK63y1PEVBlx p50gT2ezWrH6+EPEK163nBdunaCXijDYtX1pDn8Uml0PQONpy1jJl3aa9C7eauPy MWmcdxyxd6Z3 =hpzC -----END PGP SIGNATURE----- Sat Dec 28 03:35:34 UTC 2024 I: Checking whether the package is not for us Sat Dec 28 03:35:34 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Sat Dec 28 03:35:34 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Sat Dec 28 03:36:57 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 27 15:35:39 -12 2024 I: pbuilder-time-stamp: 1735356939 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [trinculo_0.96+dfsg-4.dsc] I: copying [./trinculo_0.96+dfsg.orig.tar.xz] I: copying [./trinculo_0.96+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 31 19:18:58 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./trinculo_0.96+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting trinculo in trinculo-0.96+dfsg dpkg-source: info: unpacking trinculo_0.96+dfsg.orig.tar.xz dpkg-source: info: unpacking trinculo_0.96+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc11.patch dpkg-source: info: applying fix-interpreter.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15220/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7e10d724ed8140f29b1a0884e4059cf7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15220' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6nwoxIyu/pbuilderrc_2G41 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6nwoxIyu/b1 --logfile b1/build.log trinculo_0.96+dfsg-4.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/15220/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), liblapack-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 23.4 MB of archives. After unpacking 91.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-3 [195 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-6 [1091 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-3 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-3 [1488 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-4 [111 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libblas-dev armhf 3.12.0-4 [121 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-8 [263 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-4 [1828 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf liblapack-dev armhf 3.12.0-4 [1930 kB] Fetched 23.4 MB in 3s (8445 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-3_armhf.deb ... Unpacking gettext-base (0.22.5-3) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-6_armhf.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-12_armhf.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-3_all.deb ... Unpacking autopoint (0.22.5-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../23-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-3_armhf.deb ... Unpacking gettext (0.22.5-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../29-libblas3_3.12.0-4_armhf.deb ... Unpacking libblas3:armhf (3.12.0-4) ... Selecting previously unselected package libblas-dev:armhf. Preparing to unpack .../30-libblas-dev_3.12.0-4_armhf.deb ... Unpacking libblas-dev:armhf (3.12.0-4) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../31-libgfortran5_14.2.0-8_armhf.deb ... Unpacking libgfortran5:armhf (14.2.0-8) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../32-liblapack3_3.12.0-4_armhf.deb ... Unpacking liblapack3:armhf (3.12.0-4) ... Selecting previously unselected package liblapack-dev:armhf. Preparing to unpack .../33-liblapack-dev_3.12.0-4_armhf.deb ... Unpacking liblapack-dev:armhf (3.12.0-4) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up autopoint (0.22.5-3) ... Setting up libgfortran5:armhf (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libblas-dev:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.22.5-3) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up liblapack-dev:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/trinculo-0.96+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../trinculo_0.96+dfsg-4_source.changes dpkg-buildpackage: info: source package trinculo dpkg-buildpackage: info: source version 0.96+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/trinculo-0.96+dfsg' arm-linux-gnueabihf-g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/trinculo-0.96+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DLINUX -Isrc -o bin/trinculo src/trinculo.cpp -llapack -lpthread -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/c++/14/vector:72, from src/trinculo.cpp:22: /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void covars::readCovar(std::string, std::map, int>, int, int)' at src/readCovar.h:65:25: /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/trinculo-0.96+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/trinculo/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'trinculo' in '../trinculo_0.96+dfsg-4_armhf.deb'. dpkg-deb: building package 'trinculo-dbgsym' in '../trinculo-dbgsym_0.96+dfsg-4_armhf.deb'. dpkg-genbuildinfo --build=binary -O../trinculo_0.96+dfsg-4_armhf.buildinfo dpkg-genchanges --build=binary -O../trinculo_0.96+dfsg-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15220 and its subdirectories I: Current time: Fri Dec 27 15:36:51 -12 2024 I: pbuilder-time-stamp: 1735357011 Sat Dec 28 03:36:59 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64c-armhf-rb.debian.net. Sat Dec 28 03:36:59 UTC 2024 I: Preparing to do remote build '2' on virt64c-armhf-rb.debian.net. Sat Dec 28 03:38:39 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. Sat Dec 28 03:38:41 UTC 2024 I: trinculo_0.96+dfsg-4_armhf.changes: Format: 1.8 Date: Mon, 01 Nov 2021 00:43:03 +0530 Source: trinculo Binary: trinculo trinculo-dbgsym Architecture: armhf Version: 0.96+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: trinculo - toolkit to carry out genetic association for multi-category pheno Closes: 997266 Changes: trinculo (0.96+dfsg-4) unstable; urgency=medium . * Add patch to fix FTBFS with gcc-11 (Closes: #997266) * Add myself as an uploader instead + Thanks Pranav, for your work so far * Bump debhelper compatibility level to 13 * Bump Standards-Version to 4.6.0 (no changes needed) * Port python2 scripts to python3 fix interpreter, fix bugs in them * Install trinculo in /usr/bin, not in /bin * Run testing.py file (vendored by upstream) as autopkgtest as well Checksums-Sha1: 705caa80b353d480e96f713d865d6d2e20da07de 513120 trinculo-dbgsym_0.96+dfsg-4_armhf.deb 39d2da677b3cdb4c57d39bf93ddcbc9b87240d69 5022 trinculo_0.96+dfsg-4_armhf.buildinfo d724cfbb5c333ae369ee543cae85fe36bd6b59b6 85304 trinculo_0.96+dfsg-4_armhf.deb Checksums-Sha256: fec423a72bad9ee1bac509b67a89ca4b4f568a806b1b5e74e9f313d4e20fbd4f 513120 trinculo-dbgsym_0.96+dfsg-4_armhf.deb b3414377a81069aa4c68c2322bc5523d5d47723eb60db513281712d5ee8fab90 5022 trinculo_0.96+dfsg-4_armhf.buildinfo 96e6fde8d0061278aaf1aeb5d8a46bd0d6fd23c345a0a882659b5097d9d0acdf 85304 trinculo_0.96+dfsg-4_armhf.deb Files: 8dbfed57e282553565e8f203daf824ec 513120 debug optional trinculo-dbgsym_0.96+dfsg-4_armhf.deb ea2a92b3f94862437815792cd1362a7d 5022 science optional trinculo_0.96+dfsg-4_armhf.buildinfo 1c99bf717885f2c98e500fbf81df52aa 85304 science optional trinculo_0.96+dfsg-4_armhf.deb Sat Dec 28 03:38:43 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_33-19567.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6nwoxIyu/trinculo_0.96+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6nwoxIyu/trinculo_0.96+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6nwoxIyu/trinculo_0.96+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6nwoxIyu/b1/trinculo_0.96+dfsg-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.6nwoxIyu/b2/trinculo_0.96+dfsg-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.345s) 0.345s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 656ms CPU time consumed: 657ms Sat Dec 28 03:49:18 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sat Dec 28 03:49:18 UTC 2024 I: trinculo from trixie built successfully and reproducibly on armhf. Sat Dec 28 03:49:23 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Dec 28 03:49:23 UTC 2024 I: Submitting 8.0K b1/trinculo_0.96+dfsg-4_armhf.buildinfo.asc Sat Dec 28 03:49:29 UTC 2024 I: Submitting 8.0K b2/trinculo_0.96+dfsg-4_armhf.buildinfo.asc Sat Dec 28 03:49:48 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Dec 28 03:49:48 UTC 2024 I: Done submitting .buildinfo files. Sat Dec 28 03:49:48 UTC 2024 I: Removing signed trinculo_0.96+dfsg-4_armhf.buildinfo.asc files: removed './b1/trinculo_0.96+dfsg-4_armhf.buildinfo.asc' removed './b2/trinculo_0.96+dfsg-4_armhf.buildinfo.asc'