Sat Dec 21 23:35:07 UTC 2024 I: starting to build bio-eagle/trixie/i386 on jenkins on '2024-12-21 23:34' Sat Dec 21 23:35:07 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/51091/console.log Sat Dec 21 23:35:07 UTC 2024 I: Downloading source for trixie/bio-eagle=2.4.1-3 --2024-12-21 23:35:07-- http://deb.debian.org/debian/pool/main/b/bio-eagle/bio-eagle_2.4.1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2210 (2.2K) [text/prs.lines.tag] Saving to: ‘bio-eagle_2.4.1-3.dsc’ 0K .. 100% 383M=0s 2024-12-21 23:35:07 (383 MB/s) - ‘bio-eagle_2.4.1-3.dsc’ saved [2210/2210] Sat Dec 21 23:35:07 UTC 2024 I: bio-eagle_2.4.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bio-eagle Binary: bio-eagle, bio-eagle-examples Architecture: any-amd64 any-i386 all Version: 2.4.1-3 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://data.broadinstitute.org/alkesgroup/Eagle/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/bio-eagle Vcs-Git: https://salsa.debian.org/med-team/bio-eagle.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libopenblas-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libhts-dev (>= 1.4), zlib1g-dev Package-List: bio-eagle deb science optional arch=any-amd64,any-i386 bio-eagle-examples deb science optional arch=all Checksums-Sha1: f0520ee1ae5f8d637c671bae1b56c088a50ae8ef 1627875 bio-eagle_2.4.1.orig.tar.gz 849030216b9ff34c5daaca7f1eac3f614713adfe 8668 bio-eagle_2.4.1-3.debian.tar.xz Checksums-Sha256: 85804bfe972186ccb66e602856d6e04044302e5c0dbf9309849b0cde981e3432 1627875 bio-eagle_2.4.1.orig.tar.gz 4880ebbb101fb04990943765e74e4bf5dfc5e4fc1daddee790b528005020fcd1 8668 bio-eagle_2.4.1-3.debian.tar.xz Files: c14a9611f226b7267e7ead92e95a7309 1627875 bio-eagle_2.4.1.orig.tar.gz b2c13234aabf3d5f492f890b1f7026e4 8668 bio-eagle_2.4.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/L/jwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFNIg//bxYi9oJ25Ykb3fP3SBWjU3n4jcBWc4FG McD46vz3VIn8Lx+QeHEL2fp7Tr8/NdA4J1Yg/jj0lrW82ZXBDvSYnCgJQGxO9Jsy MizB5SY6eo3AtOQ6tHSgfHCEkGPiVSJfZdpNJTgj7MdtmMoqZ09H+30fohqFGdB3 oHAajOs/QqbtFjYRN7TUm5ZznZzX20gJTuCGoJFrW3OvkLFHgcoOLTtgYITlMHos 0vKb+FUoJPvNnF83LAJKzr9Zd7cgVi/roZJ2wNGw8cVhsqKTR/+MECrIJM+RGFU5 iUgx2IGOLaFw48auiI4Bo1EQwLzYr8+6hTj3xvbcHbTnzJCZEOYzaDk0fCeEuEL5 MHspP8BU2CFHl+G4Q8YihOu4BBJv3bh2ZWH/rgNd+Bdb0+n4VJgdLTKTVi13e1z4 TmSDaEb+GhsDDfuelAh+DCpWyoqiaRm/VJ1SfuE2sSoR9r9TVIjJ6q8Ob4eSzKzk /eIM3g5GbIA28EIKLoY9TjU5NwXpmFxDRjCwrOXfhuHOQNj9ICH/USpqIGDKU1BC x0+1nZr0Fz4pFTa6K30TI3MjV6AV8AH4RhotKeYRA+rSuLAXHVQq9/ipYvn7ZQXI 9szfTgTm93agK4cuPef64PiKkyIK0ZVyPMtfyFajgqoNnzIPyrJxayymU7gVz5l9 IKWFpTqt2OA= =imJG -----END PGP SIGNATURE----- Sat Dec 21 23:35:07 UTC 2024 I: Checking whether the package is not for us Sat Dec 21 23:35:07 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Sat Dec 21 23:35:07 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Sat Dec 21 23:37:10 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Dec 21 11:35:09 -12 2024 I: pbuilder-time-stamp: 1734824109 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [bio-eagle_2.4.1-3.dsc] I: copying [./bio-eagle_2.4.1.orig.tar.gz] I: copying [./bio-eagle_2.4.1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 5 21:40:12 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bio-eagle_2.4.1-3.dsc: no acceptable signature found dpkg-source: info: extracting bio-eagle in bio-eagle-2.4.1 dpkg-source: info: unpacking bio-eagle_2.4.1.orig.tar.gz dpkg-source: info: unpacking bio-eagle_2.4.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile_config.patch dpkg-source: info: applying non_x86_malloc I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/46581/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9ad447c6f4934b7f907d5fa5f8f480f7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='46581' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RxRiOHCD/pbuilderrc_sE39 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RxRiOHCD/b1 --logfile b1/build.log bio-eagle_2.4.1-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/46581/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libopenblas-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libhts-dev (>= 1.4), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libopenblas-dev; however: Package libopenblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev (>= 1.4); however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 70.8 MB of archives. After unpacking 417 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-3 [201 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-6 [1198 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-12 [95.9 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-3 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2~rc1-2 [24.0 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 comerr-dev i386 2.1-1.47.2~rc1-2 [55.9 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 24 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-3 [1631 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 icu-devtools i386 72.1-5+b1 [218 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 36 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libgssrpc4t64 i386 1.21.3-3 [63.1 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libkadm5clnt-mit12 i386 1.21.3-3 [43.2 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libkdb5-10t64 i386 1.21.3-3 [45.1 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libkadm5srv-mit12 i386 1.21.3-3 [57.0 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 krb5-multidev i386 1.21.3-3 [126 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libboost1.83-dev i386 1.83.0-3.2+b2 [10.6 MB] Get: 44 http://deb.debian.org/debian trixie/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B] Get: 45 http://deb.debian.org/debian trixie/main i386 libboost-regex1.83.0 i386 1.83.0-3.2+b2 [329 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libicu-dev i386 72.1-5+b1 [10.6 MB] Get: 47 http://deb.debian.org/debian trixie/main i386 libboost-regex1.83-dev i386 1.83.0-3.2+b2 [347 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libboost-iostreams1.83-dev i386 1.83.0-3.2+b2 [264 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B] Get: 50 http://deb.debian.org/debian trixie/main i386 libboost-program-options1.83.0 i386 1.83.0-3.2+b2 [361 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libboost-program-options1.83-dev i386 1.83.0-3.2+b2 [391 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libboost-program-options-dev i386 1.83.0.2+b2 [3616 B] Get: 53 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b6 [313 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.11.1-1 [404 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.22.0-1 [632 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.8-2 [447 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.8-2 [447 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2+b1 [126 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-2+b1 [208 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.19.0-3+b3 [102 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-3 [329 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-3 [661 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10-1+b1 [1334 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.8-2 [1453 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libkrb5-dev i386 1.21.3-3 [15.7 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libldap-dev i386 2.5.18+dfsg-3+b1 [324 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libnghttp3-dev i386 1.6.0-2 [101 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls-dev i386 1.9.1-1 [24.0 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libngtcp2-dev i386 1.9.1-1 [202 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.3.2-2 [2790 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1+b1 [355 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.11.1-1 [535 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.22-1 [57.2 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-8 [735 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.20+ds-2 [500 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.3-1+b1 [328 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.20+ds-2 [1693 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libopenblas0-pthread i386 0.3.28+ds-4 [5472 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libopenblas0 i386 0.3.28+ds-4 [41.0 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libopenblas-pthread-dev i386 0.3.28+ds-4 [3541 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libopenblas-dev i386 0.3.28+ds-4 [54.5 kB] Fetched 70.8 MB in 2s (44.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. 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Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../015-libcom-err2_1.47.2~rc1-2_i386.deb ... Unpacking libcom-err2:i386 (1.47.2~rc1-2) ... Selecting previously unselected package comerr-dev:i386. Preparing to unpack .../016-comerr-dev_2.1-1.47.2~rc1-2_i386.deb ... Unpacking comerr-dev:i386 (2.1-1.47.2~rc1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../023-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../025-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../026-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.22.5-3_i386.deb ... Unpacking gettext (0.22.5-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../031-icu-devtools_72.1-5+b1_i386.deb ... Unpacking icu-devtools (72.1-5+b1) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../032-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../033-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../034-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../035-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../036-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libgssrpc4t64:i386. Preparing to unpack .../037-libgssrpc4t64_1.21.3-3_i386.deb ... Unpacking libgssrpc4t64:i386 (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:i386. Preparing to unpack .../038-libkadm5clnt-mit12_1.21.3-3_i386.deb ... Unpacking libkadm5clnt-mit12:i386 (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:i386. Preparing to unpack .../039-libkdb5-10t64_1.21.3-3_i386.deb ... Unpacking libkdb5-10t64:i386 (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:i386. Preparing to unpack .../040-libkadm5srv-mit12_1.21.3-3_i386.deb ... Unpacking libkadm5srv-mit12:i386 (1.21.3-3) ... Selecting previously unselected package krb5-multidev:i386. Preparing to unpack .../041-krb5-multidev_1.21.3-3_i386.deb ... Unpacking krb5-multidev:i386 (1.21.3-3) ... Selecting previously unselected package libboost1.83-dev:i386. Preparing to unpack .../042-libboost1.83-dev_1.83.0-3.2+b2_i386.deb ... Unpacking libboost1.83-dev:i386 (1.83.0-3.2+b2) ... Selecting previously unselected package libboost-dev:i386. Preparing to unpack .../043-libboost-dev_1.83.0.2+b2_i386.deb ... Unpacking libboost-dev:i386 (1.83.0.2+b2) ... Selecting previously unselected package libboost-regex1.83.0:i386. Preparing to unpack .../044-libboost-regex1.83.0_1.83.0-3.2+b2_i386.deb ... Unpacking libboost-regex1.83.0:i386 (1.83.0-3.2+b2) ... Selecting previously unselected package libicu-dev:i386. Preparing to unpack .../045-libicu-dev_72.1-5+b1_i386.deb ... Unpacking libicu-dev:i386 (72.1-5+b1) ... Selecting previously unselected package libboost-regex1.83-dev:i386. Preparing to unpack .../046-libboost-regex1.83-dev_1.83.0-3.2+b2_i386.deb ... Unpacking libboost-regex1.83-dev:i386 (1.83.0-3.2+b2) ... Selecting previously unselected package libboost-iostreams1.83-dev:i386. Preparing to unpack .../047-libboost-iostreams1.83-dev_1.83.0-3.2+b2_i386.deb ... Unpacking libboost-iostreams1.83-dev:i386 (1.83.0-3.2+b2) ... Selecting previously unselected package libboost-iostreams-dev:i386. Preparing to unpack .../048-libboost-iostreams-dev_1.83.0.2+b2_i386.deb ... Unpacking libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Selecting previously unselected package libboost-program-options1.83.0:i386. Preparing to unpack .../049-libboost-program-options1.83.0_1.83.0-3.2+b2_i386.deb ... Unpacking libboost-program-options1.83.0:i386 (1.83.0-3.2+b2) ... Selecting previously unselected package libboost-program-options1.83-dev:i386. Preparing to unpack .../050-libboost-program-options1.83-dev_1.83.0-3.2+b2_i386.deb ... Unpacking libboost-program-options1.83-dev:i386 (1.83.0-3.2+b2) ... Selecting previously unselected package libboost-program-options-dev:i386. Preparing to unpack .../051-libboost-program-options-dev_1.83.0.2+b2_i386.deb ... Unpacking libboost-program-options-dev:i386 (1.83.0.2+b2) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../052-libbrotli1_1.1.0-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b6) ... Selecting previously unselected package libbrotli-dev:i386. Preparing to unpack .../053-libbrotli-dev_1.1.0-2+b6_i386.deb ... Unpacking libbrotli-dev:i386 (1.1.0-2+b6) ... Selecting previously unselected package libbz2-dev:i386. Preparing to unpack .../054-libbz2-dev_1.0.8-6_i386.deb ... Unpacking libbz2-dev:i386 (1.0.8-6) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../055-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../056-libsasl2-2_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../057-libldap-2.5-0_2.5.18+dfsg-3+b1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../058-libnghttp2-14_1.64.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:i386. Preparing to unpack .../059-libnghttp3-9_1.6.0-2_i386.deb ... Unpacking libnghttp3-9:i386 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:i386. Preparing to unpack .../060-libngtcp2-16_1.9.1-1_i386.deb ... Unpacking libngtcp2-16:i386 (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:i386. Preparing to unpack .../061-libngtcp2-crypto-gnutls8_1.9.1-1_i386.deb ... Unpacking libngtcp2-crypto-gnutls8:i386 (1.9.1-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../062-libpsl5t64_0.21.2-1.1+b1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../063-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../064-libssh2-1t64_1.11.1-1_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:i386. Preparing to unpack .../065-libcurl3t64-gnutls_8.11.1-1_i386.deb ... Unpacking libcurl3t64-gnutls:i386 (8.11.1-1) ... Selecting previously unselected package libevent-2.1-7t64:i386. Preparing to unpack .../066-libevent-2.1-7t64_2.1.12-stable-10+b1_i386.deb ... Unpacking libevent-2.1-7t64:i386 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:i386. Preparing to unpack .../067-libunbound8_1.22.0-1_i386.deb ... Unpacking libunbound8:i386 (1.22.0-1) ... Selecting previously unselected package libgnutls-dane0t64:i386. Preparing to unpack .../068-libgnutls-dane0t64_3.8.8-2_i386.deb ... Unpacking libgnutls-dane0t64:i386 (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:i386. Preparing to unpack .../069-libgnutls-openssl27t64_3.8.8-2_i386.deb ... Unpacking libgnutls-openssl27t64:i386 (3.8.8-2) ... Selecting previously unselected package libidn2-dev:i386. Preparing to unpack .../070-libidn2-dev_2.3.7-2+b1_i386.deb ... Unpacking libidn2-dev:i386 (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit-dev:i386. Preparing to unpack .../071-libp11-kit-dev_0.25.5-2+b1_i386.deb ... Unpacking libp11-kit-dev:i386 (0.25.5-2+b1) ... Selecting previously unselected package libtasn1-6-dev:i386. Preparing to unpack .../072-libtasn1-6-dev_4.19.0-3+b3_i386.deb ... Unpacking libtasn1-6-dev:i386 (4.19.0-3+b3) ... Selecting previously unselected package libgmpxx4ldbl:i386. Preparing to unpack .../073-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_i386.deb ... Unpacking libgmpxx4ldbl:i386 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libgmp-dev:i386. Preparing to unpack .../074-libgmp-dev_2%3a6.3.0+dfsg-3_i386.deb ... Unpacking libgmp-dev:i386 (2:6.3.0+dfsg-3) ... Selecting previously unselected package nettle-dev:i386. Preparing to unpack .../075-nettle-dev_3.10-1+b1_i386.deb ... Unpacking nettle-dev:i386 (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:i386. Preparing to unpack .../076-libgnutls28-dev_3.8.8-2_i386.deb ... Unpacking libgnutls28-dev:i386 (3.8.8-2) ... Selecting previously unselected package libkrb5-dev:i386. Preparing to unpack .../077-libkrb5-dev_1.21.3-3_i386.deb ... Unpacking libkrb5-dev:i386 (1.21.3-3) ... Selecting previously unselected package libldap-dev:i386. Preparing to unpack .../078-libldap-dev_2.5.18+dfsg-3+b1_i386.deb ... Unpacking libldap-dev:i386 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libpkgconf3:i386. Preparing to unpack .../079-libpkgconf3_1.8.1-4_i386.deb ... Unpacking libpkgconf3:i386 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../080-pkgconf-bin_1.8.1-4_i386.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:i386. Preparing to unpack .../081-pkgconf_1.8.1-4_i386.deb ... Unpacking pkgconf:i386 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:i386. Preparing to unpack .../082-libnghttp2-dev_1.64.0-1_i386.deb ... Unpacking libnghttp2-dev:i386 (1.64.0-1) ... Selecting previously unselected package libnghttp3-dev:i386. Preparing to unpack .../083-libnghttp3-dev_1.6.0-2_i386.deb ... Unpacking libnghttp3-dev:i386 (1.6.0-2) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:i386. Preparing to unpack .../084-libngtcp2-crypto-gnutls-dev_1.9.1-1_i386.deb ... Unpacking libngtcp2-crypto-gnutls-dev:i386 (1.9.1-1) ... Selecting previously unselected package libngtcp2-dev:i386. Preparing to unpack .../085-libngtcp2-dev_1.9.1-1_i386.deb ... Unpacking libngtcp2-dev:i386 (1.9.1-1) ... Selecting previously unselected package libpsl-dev:i386. Preparing to unpack .../086-libpsl-dev_0.21.2-1.1+b1_i386.deb ... Unpacking libpsl-dev:i386 (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:i386. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bio-eagle-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bio-eagle_2.4.1-3_source.changes dpkg-buildpackage: info: source package bio-eagle dpkg-buildpackage: info: source version 2.4.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j11 clean make[1]: Entering directory '/build/reproducible-path/bio-eagle-2.4.1/src' rm -f *.o rm -f eagle make[1]: Leaving directory '/build/reproducible-path/bio-eagle-2.4.1/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src -Nbio-eagle-examples dh_auto_build -O--sourcedirectory=src -Nbio-eagle-examples cd src && make -j11 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bio-eagle-2.4.1/src' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o EagleMain.o -c EagleMain.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o DipTreePBWT.o -c DipTreePBWT.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o Eagle.o -c Eagle.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o EagleImpMiss.o -c EagleImpMiss.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o EagleParams.o -c EagleParams.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o EaglePBWT.o -c EaglePBWT.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o FileUtils.o -c FileUtils.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o GenoData.o -c GenoData.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o HapHedge.o -c HapHedge.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o MapInterpolater.o -c MapInterpolater.cpp g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o MemoryUtils.o -c MemoryUtils.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o NumericUtils.o -c NumericUtils.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o StaticMultimap.o -c StaticMultimap.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o StringUtils.o -c StringUtils.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o SyncedVcfData.o -c SyncedVcfData.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ EagleMain.cpp: In function 'void phaseWithRef(EAGLE::EagleParams&, Timer&, double, int, char**)': EagleMain.cpp:109:17: warning: unused variable 'hapBitsTptr' [-Wunused-variable] 109 | HapBitsT *hapBitsTptr = NULL; | ^~~~~~~~~~~ EagleMain.cpp:110:17: warning: unused variable 'hapHedgePtr' [-Wunused-variable] 110 | HapHedge *hapHedgePtr = NULL; | ^~~~~~~~~~~ EagleMain.cpp:104:25: warning: unused variable 'timeImpMissing' [-Wunused-variable] 104 | double timeMN2 = 0, timeImpMissing = 0; | ^~~~~~~~~~~~~~ EagleMain.cpp: In function 'int main(int, char**)': EagleMain.cpp:448:68: warning: unused variable 'timeImpMissing' [-Wunused-variable] 448 | double t23 = timer.get_time(); timer.update_time(); double timeImpMissing = 0; | ^~~~~~~~~~~~~~ SyncedVcfData.cpp: In member function 'std::vector > EAGLE::SyncedVcfData::processVcfs(const std::string&, const std::string&, const std::string&, bool, int&, int, double, double, std::vector&, std::vector&, const std::string&, const std::string&, int, std::vector > >&, bool, std::vector&)': SyncedVcfData.cpp:228:18: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 228 | bcf_hdr_write(out, tgt_hdr); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ SyncedVcfData.cpp:262:49: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 262 | if (outputUnphased && tgt) { bcf_write(out, tgt_hdr, tgt); isTmpPhased.push_back(false); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ SyncedVcfData.cpp:270:42: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 270 | if (outputUnphased) { bcf_write(out, tgt_hdr, tgt); isTmpPhased.push_back(false); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ SyncedVcfData.cpp:287:42: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 287 | if (outputUnphased) { bcf_write(out, tgt_hdr, tgt); isTmpPhased.push_back(false); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ SyncedVcfData.cpp:293:42: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 293 | if (outputUnphased) { bcf_write(out, tgt_hdr, tgt); isTmpPhased.push_back(false); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ SyncedVcfData.cpp:303:42: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 303 | if (outputUnphased) { bcf_write(out, tgt_hdr, tgt); isTmpPhased.push_back(false); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ SyncedVcfData.cpp:321:42: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 321 | if (outputUnphased) { bcf_write(out, tgt_hdr, tgt); isTmpPhased.push_back(false); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ SyncedVcfData.cpp:377:18: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 377 | bcf_write(out, tgt_hdr, tgt); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ Eagle.cpp: In member function 'void EAGLE::Eagle::readPhaseConfs(const std::string&)': Eagle.cpp:3108:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3108 | fread(phaseConfs, 1, 2*N*Mseg64*64, fout); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-eagle-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o Timer.o -c Timer.cpp cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ Eagle.cpp: In function 'void EAGLE::bcf_hdr_append_eagle_version(bcf_hdr_t*, int, char**)': Eagle.cpp:3221:17: warning: ignoring return value of 'int bcf_hdr_sync(bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3221 | bcf_hdr_sync(hdr); | ~~~~~~~~~~~~^~~~~ Eagle.cpp: In member function 'void EAGLE::Eagle::writeVcf(const std::string&, const std::vector&, const std::string&, int, double, double, const std::string&, bool, bool, int, char**) const': Eagle.cpp:3248:18: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3248 | bcf_hdr_write(out, hdr); | ~~~~~~~~~~~~~^~~~~~~~~~ Eagle.cpp:3270:20: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3270 | bcf_write(out, hdr, rec); | ~~~~~~~~~^~~~~~~~~~~~~~~ Eagle.cpp:3282:20: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3282 | bcf_write(out, hdr, rec); | ~~~~~~~~~^~~~~~~~~~~~~~~ Eagle.cpp:3347:20: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3347 | bcf_write(out, hdr, rec); | ~~~~~~~~~^~~~~~~~~~~~~~~ Eagle.cpp: In member function 'void EAGLE::Eagle::writeVcfNonRef(const std::string&, const std::string&, int, int, double, double, const std::string&, bool, bool, int, char**) const': Eagle.cpp:3388:18: warning: ignoring return value of 'int bcf_hdr_write(htsFile*, bcf_hdr_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3388 | bcf_hdr_write(out, hdr); | ~~~~~~~~~~~~~^~~~~~~~~~ Eagle.cpp:3467:18: warning: ignoring return value of 'int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)' declared with attribute 'warn_unused_result' [-Wunused-result] 3467 | bcf_write(out, hdr, rec); | ~~~~~~~~~^~~~~~~~~~~~~~~ SyncedVcfData.cpp: In function 'void EAGLE::process_ref_genotypes(int, int, int32_t*, bool, bool, std::vector&, int&, int&, uint&)': SyncedVcfData.cpp:103:28: warning: 'haps' may be used uninitialized [-Wmaybe-uninitialized] 103 | haps[1] = !haps[1]; | ~~~~~~^ SyncedVcfData.cpp:60:14: note: 'haps' declared here 60 | bool haps[2]; bool missing = false, unphased = false; | ^~~~ SyncedVcfData.cpp:102:28: warning: 'haps' may be used uninitialized [-Wmaybe-uninitialized] 102 | haps[0] = !haps[0]; | ~~~~~~^ SyncedVcfData.cpp:60:14: note: 'haps' declared here 60 | bool haps[2]; bool missing = false, unphased = false; | ^~~~ Eagle.cpp: In member function 'std::string EAGLE::Eagle::computePhaseString(uint64, uint64, uint64, const std::vector&, const std::vector&, uint64, double, bool) const': Eagle.cpp:1124:50: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 11 [-Wformat-overflow=] 1124 | char buf[20]; sprintf(buf, "[%.1fcM:%d/%d]", cM-lastPhased, hetCount, snpCount); | ^~ Eagle.cpp:1124:38: note: directive argument in the range [-2147483647, 2147483647] 1124 | char buf[20]; sprintf(buf, "[%.1fcM:%d/%d]", cM-lastPhased, hetCount, snpCount); | ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from Eagle.cpp:20: In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string EAGLE::Eagle::computePhaseString(uint64, uint64, uint64, const std::vector&, const std::vector&, uint64, double, bool) const' at Eagle.cpp:1124:25: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 12 and 340 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Eagle.cpp: In member function 'std::string EAGLE::Eagle::computePhaseString(uint64, uint64, uint64, const std::vector&, const std::vector&, uint64, double, bool) const': Eagle.cpp:1156:51: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 1156 | char buf[20]; sprintf(buf, "[%.1fcM:%d/%d]", cM-lastPhased, hetCount, snpCount); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string EAGLE::Eagle::computePhaseString(uint64, uint64, uint64, const std::vector&, const std::vector&, uint64, double, bool) const' at Eagle.cpp:1156:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 12 and 340 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Eagle.cpp: In member function 'void EAGLE::Eagle::printMatch(uint64, uint64, uint64, const EAGLE::Match&, double (*)[4]) const': Eagle.cpp:1197:53: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 1197 | char buf[20]; sprintf(buf, "[%.1fcM:%d/%d]", cM-lastPhased, hetCount, snpCount); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'void EAGLE::Eagle::printMatch(uint64, uint64, uint64, const EAGLE::Match&, double (*)[4]) const' at Eagle.cpp:1197:25: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 12 and 340 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -fopenmp -Wl,-z,relro -Wl,-z,now -o eagle EagleMain.o DipTreePBWT.o Eagle.o EagleImpMiss.o EagleParams.o EaglePBWT.o FileUtils.o GenoData.o HapHedge.o MapInterpolater.o MemoryUtils.o NumericUtils.o StaticMultimap.o StringUtils.o SyncedVcfData.o Timer.o -lhts -lboost_program_options -lboost_iostreams -lz -lopenblas -lpthread -lm make[1]: Leaving directory '/build/reproducible-path/bio-eagle-2.4.1/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/bio-eagle-2.4.1' echo "I: Nothing to do for arch:indep binary" I: Nothing to do for arch:indep binary make[1]: Leaving directory '/build/reproducible-path/bio-eagle-2.4.1' dh_auto_install -O--sourcedirectory=src -Nbio-eagle-examples dh_install -O--sourcedirectory=src dh_installdocs -O--sourcedirectory=src debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/bio-eagle-2.4.1' dh_installchangelogs debian/upstream.changelog make[1]: Leaving directory '/build/reproducible-path/bio-eagle-2.4.1' dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'bio-eagle-dbgsym' in '../bio-eagle-dbgsym_2.4.1-3_i386.deb'. dpkg-deb: building package 'bio-eagle-examples' in '../bio-eagle-examples_2.4.1-3_all.deb'. dpkg-deb: building package 'bio-eagle' in '../bio-eagle_2.4.1-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../bio-eagle_2.4.1-3_i386.buildinfo dpkg-genchanges --build=binary -O../bio-eagle_2.4.1-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/46581 and its subdirectories I: Current time: Sat Dec 21 11:37:09 -12 2024 I: pbuilder-time-stamp: 1734824229 Sat Dec 21 23:37:12 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Sat Dec 21 23:37:12 UTC 2024 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Sat Dec 21 23:38:15 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. Sat Dec 21 23:38:15 UTC 2024 I: bio-eagle_2.4.1-3_i386.changes: Format: 1.8 Date: Sat, 05 Dec 2020 22:31:32 +0100 Source: bio-eagle Binary: bio-eagle bio-eagle-dbgsym bio-eagle-examples Architecture: i386 all Version: 2.4.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bio-eagle - Haplotype phasing within a genotyped cohort or using a phased ref bio-eagle-examples - Examples for bio-eagle Closes: 976572 Changes: bio-eagle (2.4.1-3) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * Standards-Version: 4.5.1 (routine-update) * Do nothing in dh_auto_configure and dh_auto_build for indep binaries Closes: #976572 . [ Michael R. Crusoe ] * Add patch for compilation on systems without SSE. Use of "rdtsc" assembly still makes it x86 specific. Checksums-Sha1: 78d28981a6f9f7dea81b835a33777de9a9bf248f 3118148 bio-eagle-dbgsym_2.4.1-3_i386.deb 0c7f803af9f33586d7a7dff566f6e386de744143 1525108 bio-eagle-examples_2.4.1-3_all.deb d2821a4c33c5240511634ead0fd73ddbbf30a20d 7976 bio-eagle_2.4.1-3_i386.buildinfo a3de201c98c2f6a161214cebf63e4d64e9311a0a 261788 bio-eagle_2.4.1-3_i386.deb Checksums-Sha256: 691c88820a02f43418f76f52298aef6b53172015d293c62472233814247cbf04 3118148 bio-eagle-dbgsym_2.4.1-3_i386.deb b5beaeaec8ca33b7d09077192e13f696883d43b31ce2c37c432cd46c3fa380f5 1525108 bio-eagle-examples_2.4.1-3_all.deb 44f1cdfef3e2276521960e69c461df894f46672557bbf80d263bb0da6855b2d3 7976 bio-eagle_2.4.1-3_i386.buildinfo 23cf3111bafd28cef8cbaabcf578375517328b793b033906008bef41a211f125 261788 bio-eagle_2.4.1-3_i386.deb Files: 1ffe8ab691407197d8442a9c0627f573 3118148 debug optional bio-eagle-dbgsym_2.4.1-3_i386.deb 88070cf4a2cd58ab776bcbde10bcff6b 1525108 science optional bio-eagle-examples_2.4.1-3_all.deb a6c29b20bfb149cc88537446aad2c22c 7976 science optional bio-eagle_2.4.1-3_i386.buildinfo 24455e03d30e5aa73b9386ac71b8ed37 261788 science optional bio-eagle_2.4.1-3_i386.deb Sat Dec 21 23:38:17 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_1-51091.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RxRiOHCD/bio-eagle_2.4.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RxRiOHCD/bio-eagle_2.4.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RxRiOHCD/bio-eagle_2.4.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RxRiOHCD/b1/bio-eagle_2.4.1-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.RxRiOHCD/b2/bio-eagle_2.4.1-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.440s) 0.440s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.058s) 0.058s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 776ms CPU time consumed: 775ms Sat Dec 21 23:38:19 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sat Dec 21 23:38:19 UTC 2024 I: bio-eagle from trixie built successfully and reproducibly on i386. Sat Dec 21 23:38:20 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Dec 21 23:38:20 UTC 2024 I: Submitting 12K b1/bio-eagle_2.4.1-3_i386.buildinfo.asc Sat Dec 21 23:38:21 UTC 2024 I: Submitting 12K b2/bio-eagle_2.4.1-3_i386.buildinfo.asc Sat Dec 21 23:38:21 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Dec 21 23:38:21 UTC 2024 I: Done submitting .buildinfo files. Sat Dec 21 23:38:21 UTC 2024 I: Removing signed bio-eagle_2.4.1-3_i386.buildinfo.asc files: removed './b1/bio-eagle_2.4.1-3_i386.buildinfo.asc' removed './b2/bio-eagle_2.4.1-3_i386.buildinfo.asc'