Tue Feb 25 00:40:33 UTC 2025 I: starting to build indelible/trixie/i386 on jenkins on '2025-02-25 00:40' Tue Feb 25 00:40:33 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/52133/console.log Tue Feb 25 00:40:33 UTC 2025 I: Downloading source for trixie/indelible=1.03-6 --2025-02-25 00:40:33-- http://deb.debian.org/debian/pool/main/i/indelible/indelible_1.03-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2145 (2.1K) [text/prs.lines.tag] Saving to: ‘indelible_1.03-6.dsc’ 0K .. 100% 262M=0s 2025-02-25 00:40:33 (262 MB/s) - ‘indelible_1.03-6.dsc’ saved [2145/2145] Tue Feb 25 00:40:33 UTC 2025 I: indelible_1.03-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: indelible Binary: indelible Architecture: any Version: 1.03-6 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl , Étienne Mollier Homepage: http://abacus.gene.ucl.ac.uk/software/indelible/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/indelible Vcs-Git: https://salsa.debian.org/med-team/indelible.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: indelible deb science optional arch=any Checksums-Sha1: 187d199eccb29718e76fc5992092f86214f4c6e4 196596 indelible_1.03.orig.tar.xz 2dd46f9f745dc4dd91f89de0718f396bf58d13a2 53144 indelible_1.03-6.debian.tar.xz Checksums-Sha256: 60ed2a8fd50608a56a92f708a117194d4a6d23a53e55ecc27bf76e5fdf470c80 196596 indelible_1.03.orig.tar.xz cce6a88c887930827ac2fc70ea1fb5d64066c21a579a8eec11f540db346dca18 53144 indelible_1.03-6.debian.tar.xz Files: 4a06db04f2acab8169c5b3b821759a35 196596 indelible_1.03.orig.tar.xz 5cac75afb480d511f942aefddd5c457f 53144 indelible_1.03-6.debian.tar.xz Dgit: d78219e7ebddf0c93171ba59b5ac666cf36423c8 debian archive/debian/1.03-6 https://git.dgit.debian.org/indelible -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWQXm8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrxzBAAslRf4ylggCdvdZBOwhlltuKY7LKA 08yqm94l6jXNpmWP5X9h6l13k5CO0ZpXkRCGmdxPtIAcTqiyYgO8bkcVKet0TzSW Hc0AKK1mGyDMpz3OvlA48hlJ7RB/6YwCCOOBEAJy2xd3adx+A0ZxydVXwR8AO85q 5C36parbsnEd4tPNHQv81rrjyUnVSyY6JV6kkI+CvcgsJm5DMltcJ4XEPl0SJSNg +g6fjB6DXxduSb/EZui5KlN9PMuEmo3u/9dpnU9WTqhvpX7BESECLQBqnVZHXeSi wcNnox5e9WIerJTOpAyNJ/2OiyAoZk/OL6/Oj07n7rGKZlfx6POZsdwMFTRdFY3A JgWsKN0+ywkC/ruRIjr+WpXy0MTF5y32LIA4XPBgO0oeXIJi2qZlQS22WDpqfB9r GZA7iCFqzAbM4xeOuVrkFD+DtfvhHcF0BEqg4W6D1s9bql7AKyvSIFoHuxd7aHIT Lf18f4oaY8RmccpIZaxXep9slO0ecNc30bjABffu9YvYPF+JwFYdy+Abxin8nVvk dQwAS1lBd4XsvmT/Fu4I25Vz+HhV5P74GRle4bIzUFEbQmEWODJwIzdFCAnSc2KC P6MtJ6fO5nV1m+GfLuqCFl9XR9WU7b45HdpLb5+k8NYPsdZ2iL7bY0NL+w8H4STK tX7QlS9sdbNqu9U= =jb7z -----END PGP SIGNATURE----- Tue Feb 25 00:40:33 UTC 2025 I: Checking whether the package is not for us Tue Feb 25 00:40:33 UTC 2025 I: Starting 1st build on remote node ionos12-i386.debian.net. Tue Feb 25 00:40:33 UTC 2025 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Tue Feb 25 00:43:04 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 24 12:40:35 -12 2025 I: pbuilder-time-stamp: 1740444035 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [indelible_1.03-6.dsc] I: copying [./indelible_1.03.orig.tar.xz] I: copying [./indelible_1.03-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./indelible_1.03-6.dsc: unsupported subcommand dpkg-source: info: extracting indelible in indelible-1.03 dpkg-source: info: unpacking indelible_1.03.orig.tar.xz dpkg-source: info: unpacking indelible_1.03-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-added-headers-for-getpid-2.patch dpkg-source: info: applying 0002-added-documentation-index-page.patch dpkg-source: info: applying 0003-added-manpage.patch dpkg-source: info: applying 0004-added-auto-tools-build-system.patch dpkg-source: info: applying 0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch dpkg-source: info: applying 0006-spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22234/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='70bafb1a2892494eba93b03974eb7018' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22234' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6eHEJkOe/pbuilderrc_rj4T --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6eHEJkOe/b1 --logfile b1/build.log indelible_1.03-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/22234/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19788 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB of archives. After unpacking 78.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-4 [96.4 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Fetched 20.8 MB in 0s (72.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19788 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-4_i386.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../23-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_i386.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/indelible-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../indelible_1.03-6_source.changes dpkg-buildpackage: info: source package indelible dpkg-buildpackage: info: source version 1.03-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:4: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am:2: warning: source file 'src/indelible.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibility. Makefile.am:8: warning: source file 'src/control.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/models.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/paml.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am:8: warning: source file 'src/randoms.cpp' is in a subdirectory, Makefile.am:8: but option 'subdir-objects' is disabled Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for cos in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for int32_t... yes checking for uint32_t... yes checking for _Bool... no checking for stdbool.h that conforms to C99 or later... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for limits.h... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j11 make[1]: Entering directory '/build/reproducible-path/indelible-1.03' g++ -DPACKAGE_NAME=\"indelible\" -DPACKAGE_TARNAME=\"indelible\" -DPACKAGE_VERSION=\"1.03\" -DPACKAGE_STRING=\"indelible\ 1.03\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"indelible\" -DVERSION=\"1.03\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_LIMITS_H=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -I. -Isrc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indelible-indelible.o `test -f 'src/indelible.cpp' || echo './'`src/indelible.cpp In file included from src/randoms.cpp:31, from src/paml.cpp:41, from src/models.cpp:35, from src/control.cpp:38, from src/indelible.cpp:135: src/MersenneTwister.h: In member function 'MTRand::uint32 MTRand::randInt()': src/MersenneTwister.h:187:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register uint32 s1; | ^~ src/MersenneTwister.h: In member function 'void MTRand::seed(uint32*, uint32)': src/MersenneTwister.h:232:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 232 | register int i = 1; | ^ src/MersenneTwister.h:233:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 233 | register uint32 j = 0; | ^ src/MersenneTwister.h:234:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 234 | register int k = ( N > seedLength ? N : seedLength ); | ^ src/MersenneTwister.h: In member function 'void MTRand::initialize(uint32)': src/MersenneTwister.h:273:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 273 | register uint32 *s = state; | ^ src/MersenneTwister.h:274:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 274 | register uint32 *r = state; | ^ src/MersenneTwister.h:275:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 275 | register int i = 1; | ^ src/MersenneTwister.h: In member function 'void MTRand::reload()': src/MersenneTwister.h:289:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 289 | register uint32 *p = state; | ^ src/MersenneTwister.h:290:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 290 | register int i; | ^ src/MersenneTwister.h: In member function 'void MTRand::save(uint32*) const': src/MersenneTwister.h:395:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 395 | register uint32 *sa = saveArray; | ^~ src/MersenneTwister.h:396:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register const uint32 *s = state; | ^ src/MersenneTwister.h:397:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 397 | register int i = N; | ^ src/MersenneTwister.h: In member function 'void MTRand::load(uint32*)': src/MersenneTwister.h:405:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 405 | register uint32 *s = state; | ^ src/MersenneTwister.h:406:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 406 | register uint32 *la = loadArray; | ^~ src/MersenneTwister.h:407:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 407 | register int i = N; | ^ src/MersenneTwister.h: In function 'std::ostream& operator<<(std::ostream&, const MTRand&)': src/MersenneTwister.h:416:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 416 | register const MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:417:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 417 | register int i = mtrand.N; | ^ src/MersenneTwister.h: In function 'std::istream& operator>>(std::istream&, MTRand&)': src/MersenneTwister.h:425:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register MTRand::uint32 *s = mtrand.state; | ^ src/MersenneTwister.h:426:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register int i = mtrand.N; | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/indelible-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o indelible indelible-indelible.o -lm make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/indelible/ make -j11 install DESTDIR=/build/reproducible-path/indelible-1.03/debian/indelible AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/indelible-1.03' make[2]: Entering directory '/build/reproducible-path/indelible-1.03' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible' /usr/bin/install -c indelible '/build/reproducible-path/indelible-1.03/debian/indelible/usr/bin' /usr/bin/install -c -m 644 indelible.1 '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/man/man1' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/install -c -m 644 help/example_files/AMINOACID.shtml help/example_files/basicaminoacid.shtml help/example_files/basiccodon.shtml help/example_files/basicnucleotide.shtml help/example_files/basic.shtml help/example_files/branch2.shtml help/example_files/branch.shtml help/example_files/codon_RATES.txt help/example_files/CODON.shtml help/example_files/CODONsites.shtml help/example_files/indels.shtml help/example_files/multi-partitions.shtml help/example_files/mylengthmodel.txt help/example_files/nucleotide-branch.shtml help/example_files/nucleotide_RATES.txt help/example_files/NUCLEOTIDE.shtml help/example_files/random_branch_length_trees.JPG help/example_files/rates.shtml help/example_files/settings.shtml help/example_files/sitebranch.shtml help/example_files/trees.shtml help/example_files/trees.txt help/example_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/example_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/install -c -m 644 help/manual_files/branches.shtml help/manual_files/codon_RATES.txt help/manual_files/evolve.shtml help/manual_files/model.shtml help/manual_files/mylengthmodel.txt help/manual_files/nucleotide_RATES.txt help/manual_files/partitions.shtml help/manual_files/random_branch_length_trees.JPG help/manual_files/settings.shtml help/manual_files/symQmatrix.gif help/manual_files/tree.shtml help/manual_files/trees.txt help/manual_files/type.shtml help/manual_files/userAAmodel.txt '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help/manual_files' /usr/bin/mkdir -p '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' /usr/bin/install -c -m 644 help/index.html help/examples.shtml help/manual.shtml '/build/reproducible-path/indelible-1.03/debian/indelible/usr/share/doc/indelible/help' make[2]: Leaving directory '/build/reproducible-path/indelible-1.03' make[1]: Leaving directory '/build/reproducible-path/indelible-1.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'indelible' in '../indelible_1.03-6_i386.deb'. dpkg-deb: building package 'indelible-dbgsym' in '../indelible-dbgsym_1.03-6_i386.deb'. dpkg-genbuildinfo --build=binary -O../indelible_1.03-6_i386.buildinfo dpkg-genchanges --build=binary -O../indelible_1.03-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22234 and its subdirectories I: Current time: Mon Feb 24 12:43:03 -12 2025 I: pbuilder-time-stamp: 1740444183 Tue Feb 25 00:43:04 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Tue Feb 25 00:43:04 UTC 2025 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Tue Feb 25 00:44:25 UTC 2025 I: Deleting $TMPDIR on ionos6-i386.debian.net. Tue Feb 25 00:44:26 UTC 2025 I: indelible_1.03-6_i386.changes: Format: 1.8 Date: Sat, 30 Dec 2023 19:11:32 +0100 Source: indelible Binary: indelible indelible-dbgsym Architecture: i386 Version: 1.03-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: indelible - powerful and flexible simulator of biological evolution Changes: indelible (1.03-6) unstable; urgency=medium . * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.6.2. * d/s/lintian-overrides: flag false positive error. Checksums-Sha1: 8438b205661e5c3b73c670b7fe0e3a1f9208debd 2250856 indelible-dbgsym_1.03-6_i386.deb a37e2ea6e2c17bdc5e62effa4c750aa79013e344 4813 indelible_1.03-6_i386.buildinfo b6b18ee044d120f386d184a79b3e9895f056126b 426228 indelible_1.03-6_i386.deb Checksums-Sha256: 897840f8700f900f142dd1a063a7efe0e89f80fabc9d374a0ca5a28bc6c1b743 2250856 indelible-dbgsym_1.03-6_i386.deb 7d02de3b8aefb7a55a0c03df94108449c5c058f6b41a7073a1f83e06c52c676c 4813 indelible_1.03-6_i386.buildinfo e0ab8ac063e449a23e66e06af4ec2797df36f1ecc305b6cf008f978544e76ef2 426228 indelible_1.03-6_i386.deb Files: 20a571c2c4533e79ee2b46196f7bab56 2250856 debug optional indelible-dbgsym_1.03-6_i386.deb 3ef9c67acc59d06f09d3088819d332f3 4813 science optional indelible_1.03-6_i386.buildinfo c08216681b0dfd2561321f0e887e60b4 426228 science optional indelible_1.03-6_i386.deb Tue Feb 25 00:44:27 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_5-52133.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6eHEJkOe/indelible_1.03-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6eHEJkOe/indelible_1.03-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6eHEJkOe/indelible_1.03-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6eHEJkOe/b1/indelible_1.03-6_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.6eHEJkOe/b2/indelible_1.03-6_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 250ms CPU time consumed: 232ms Tue Feb 25 00:44:28 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Tue Feb 25 00:44:28 UTC 2025 I: indelible from trixie built successfully and reproducibly on i386. Tue Feb 25 00:44:29 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Feb 25 00:44:29 UTC 2025 I: Submitting 8.0K b1/indelible_1.03-6_i386.buildinfo.asc Tue Feb 25 00:44:31 UTC 2025 I: Submitting 8.0K b2/indelible_1.03-6_i386.buildinfo.asc Tue Feb 25 00:44:33 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Feb 25 00:44:33 UTC 2025 I: Done submitting .buildinfo files. Tue Feb 25 00:44:33 UTC 2025 I: Removing signed indelible_1.03-6_i386.buildinfo.asc files: removed './b1/indelible_1.03-6_i386.buildinfo.asc' removed './b2/indelible_1.03-6_i386.buildinfo.asc'