Fri Jan 24 04:26:07 UTC 2025 I: starting to build libbio-db-seqfeature-perl/trixie/i386 on jenkins on '2025-01-24 04:25'
Fri Jan 24 04:26:07 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/51689/console.log
Fri Jan 24 04:26:07 UTC 2025 I: Downloading source for trixie/libbio-db-seqfeature-perl=1.7.5-1
--2025-01-24 04:26:08-- http://deb.debian.org/debian/pool/main/libb/libbio-db-seqfeature-perl/libbio-db-seqfeature-perl_1.7.5-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2477 (2.4K) [text/prs.lines.tag]
Saving to: ‘libbio-db-seqfeature-perl_1.7.5-1.dsc’
0K .. 100% 301M=0s
2025-01-24 04:26:08 (301 MB/s) - ‘libbio-db-seqfeature-perl_1.7.5-1.dsc’ saved [2477/2477]
Fri Jan 24 04:26:08 UTC 2025 I: libbio-db-seqfeature-perl_1.7.5-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: libbio-db-seqfeature-perl
Binary: libbio-db-seqfeature-perl
Architecture: all
Version: 1.7.5-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://metacpan.org/release/Bio-DB-SeqFeature
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 13)
Build-Depends-Indep: libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl
Package-List:
libbio-db-seqfeature-perl deb perl optional arch=all
Checksums-Sha1:
fa9683859235e2e08868e5fd131cdb2f64138e33 274481 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz
2703b137885dfc7da21eecef8cf416e2ee723b43 2312 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz
Checksums-Sha256:
384b3b416f43df2bf4272abeeac5671310b21e75951be1ddc52daa41794dd2d1 274481 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz
1fcc1e0f369893bf4e21f11fd71a450d810c11a6fbd4c0a91285cd83d1241ab4 2312 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz
Files:
521c760af1b2e8f095c7a9c5ff0f8381 274481 libbio-db-seqfeature-perl_1.7.5.orig.tar.gz
0a08aeec7efdc74d4dafe427e30b2cd6 2312 libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz
Dgit: 9b039b3477b2e15c05db508282f3604dbec7d9dc debian archive/debian/1.7.5-1 https://git.dgit.debian.org/libbio-db-seqfeature-perl
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Fri Jan 24 04:26:08 UTC 2025 I: Checking whether the package is not for us
Fri Jan 24 04:26:08 UTC 2025 I: Starting 1st build on remote node ionos2-i386.debian.net.
Fri Jan 24 04:26:08 UTC 2025 I: Preparing to do remote build '1' on ionos2-i386.debian.net.
Fri Jan 24 04:26:48 UTC 2025 I: Deleting $TMPDIR on ionos2-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Jan 23 16:26:09 -12 2025
I: pbuilder-time-stamp: 1737692769
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [libbio-db-seqfeature-perl_1.7.5-1.dsc]
I: copying [./libbio-db-seqfeature-perl_1.7.5.orig.tar.gz]
I: copying [./libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./libbio-db-seqfeature-perl_1.7.5-1.dsc: unsupported subcommand
dpkg-source: info: extracting libbio-db-seqfeature-perl in libbio-db-seqfeature-perl-1.7.5
dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5.orig.tar.gz
dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.5-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/29539/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='17b914d964b344c9afc0908deba3126a'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='29539'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.X4CFpJOu/pbuilderrc_F8Y5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.X4CFpJOu/b1 --logfile b1/build.log libbio-db-seqfeature-perl_1.7.5-1.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos2-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/29539/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19842 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
Package libbio-perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libbio-db-gff-perl; however:
Package libbio-db-gff-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdbd-pg-perl; however:
Package libdbd-pg-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdbd-sqlite3-perl; however:
Package libdbd-sqlite3-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdbi-perl; however:
Package libdbi-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
Package libtest-most-perl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
apache2-bin{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libapache-dbi-perl{a} libapache2-mod-perl2{a} libapr1t64{a} libaprutil1-dbd-sqlite3{a} libaprutil1-ldap{a} libaprutil1t64{a} libarchive-zip-perl{a} libbio-db-biofetch-perl{a} libbio-db-gff-perl{a} libbio-perl-perl{a} libbrotli1{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libcom-err2{a} libcurl4t64{a} libdata-stag-perl{a} libdbd-pg-perl{a} libdbd-sqlite3-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libffi8{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libpq5{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-uplevel-perl{a} libtasn1-6{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
bioperl-run curl krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache2-reload-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libbsd-resource-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk publicsuffix wget
0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded.
Need to get 36.1 MB of archives. After unpacking 125 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.0-2 [1427 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-4 [201 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 libapr1t64 i386 1.7.5-1 [114 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libaprutil1t64 i386 1.6.3-3+b1 [96.0 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libaprutil1-dbd-sqlite3 i386 1.6.3-3+b1 [14.5 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8+b1 [20.9 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8+b1 [61.3 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 libaprutil1-ldap i386 1.6.3-3+b1 [12.5 kB]
Get: 22 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 27 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.6-1 [21.2 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 libp11-kit0 i386 0.25.5-3 [423 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libtasn1-6 i386 4.19.0-3+b3 [51.1 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 libgnutls30t64 i386 3.8.8-2 [1451 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.11.1-1+b1 [393 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 liblua5.4-0 i386 5.4.7-1+b2 [170 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 apache2-bin i386 2.4.62-3+b1 [1462 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-4 [723 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.23 [90.6 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-2 [539 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 55 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-4 [1632 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 debhelper all 13.23 [919 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 62 http://deb.debian.org/debian trixie/main i386 libdevel-symdump-perl all 2.18-5 [15.8 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 liburi-perl all 5.30-1 [105 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 libhttp-date-perl all 6.06-1 [10.7 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 libfile-listing-perl all 6.16-1 [12.4 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 libhtml-parser-perl i386 3.83-1+b2 [101 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 libhtml-tree-perl all 5.07-3 [211 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 libclone-perl i386 0.47-1+b1 [14.0 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 libio-html-perl all 1.004-3 [16.2 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 74 http://deb.debian.org/debian trixie/main i386 libhttp-message-perl all 7.00-2 [79.8 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get: 77 http://deb.debian.org/debian trixie/main i386 perl-openssl-defaults i386 7+b2 [6720 B]
Get: 78 http://deb.debian.org/debian trixie/main i386 libnet-ssleay-perl i386 1.94-2 [340 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 libnet-http-perl all 6.23-1 [23.9 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 84 http://deb.debian.org/debian trixie/main i386 libwww-perl all 6.77-1 [183 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 libapache2-mod-perl2 i386 2.0.13-2+b2 [823 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 libdbi-perl i386 1.645-1+b1 [865 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 libapache-dbi-perl all 1.12-3 [48.5 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libio-string-perl all 1.08-4 [12.1 kB]
Get: 89 http://deb.debian.org/debian trixie/main i386 libdata-stag-perl all 0.14-3 [448 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 91 http://deb.debian.org/debian trixie/main i386 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 libcgi-pm-perl all 4.67-1 [217 kB]
Get: 93 http://deb.debian.org/debian trixie/main i386 libbio-db-gff-perl all 1.7.4-1 [273 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get: 96 http://deb.debian.org/debian trixie/main i386 libpq5 i386 17.2-1+b2 [233 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 libdbd-pg-perl i386 3.18.0-1+b3 [215 kB]
Get: 98 http://deb.debian.org/debian trixie/main i386 libdbd-sqlite3-perl i386 1.76-1 [179 kB]
Get: 99 http://deb.debian.org/debian trixie/main i386 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get: 100 http://deb.debian.org/debian trixie/main i386 libexception-class-perl all 1.45-1 [34.6 kB]
Get: 101 http://deb.debian.org/debian trixie/main i386 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 102 http://deb.debian.org/debian trixie/main i386 libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 103 http://deb.debian.org/debian trixie/main i386 libtext-diff-perl all 1.45-2 [27.2 kB]
Get: 104 http://deb.debian.org/debian trixie/main i386 libtest-differences-perl all 0.71-1 [17.9 kB]
Get: 105 http://deb.debian.org/debian trixie/main i386 libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 106 http://deb.debian.org/debian trixie/main i386 libtest-warn-perl all 0.37-2 [14.5 kB]
Get: 107 http://deb.debian.org/debian trixie/main i386 libtest-most-perl all 0.38-1 [25.1 kB]
Fetched 36.1 MB in 1s (47.2 MB/s)
Preconfiguring packages ...
Selecting previously unselected package netbase.
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Preparing to unpack .../000-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package sensible-utils.
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Unpacking sensible-utils (0.0.24) ...
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Unpacking openssl (3.4.0-2) ...
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Unpacking ca-certificates (20241223) ...
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Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:i386.
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Unpacking libmagic1t64:i386 (1:5.45-3+b1) ...
Selecting previously unselected package file.
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Unpacking file (1:5.45-3+b1) ...
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Unpacking gettext-base (0.22.5-4) ...
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Unpacking libuchardet0:i386 (0.0.8-1+b2) ...
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Unpacking groff-base (1.23.0-7) ...
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Unpacking bsdextrautils (2.40.4-1) ...
Selecting previously unselected package libpipeline1:i386.
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Unpacking libpipeline1:i386 (1.5.8-1) ...
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Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package libapr1t64:i386.
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Unpacking libapr1t64:i386 (1.7.5-1) ...
Selecting previously unselected package libexpat1:i386.
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Unpacking libexpat1:i386 (2.6.4-1) ...
Selecting previously unselected package libaprutil1t64:i386.
Preparing to unpack .../015-libaprutil1t64_1.6.3-3+b1_i386.deb ...
Unpacking libaprutil1t64:i386 (1.6.3-3+b1) ...
Selecting previously unselected package libaprutil1-dbd-sqlite3:i386.
Preparing to unpack .../016-libaprutil1-dbd-sqlite3_1.6.3-3+b1_i386.deb ...
Unpacking libaprutil1-dbd-sqlite3:i386 (1.6.3-3+b1) ...
Selecting previously unselected package libsasl2-modules-db:i386.
Preparing to unpack .../017-libsasl2-modules-db_2.1.28+dfsg1-8+b1_i386.deb ...
Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libsasl2-2:i386.
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Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libldap2:i386.
Preparing to unpack .../019-libldap2_2.6.9+dfsg-1_i386.deb ...
Unpacking libldap2:i386 (2.6.9+dfsg-1) ...
Selecting previously unselected package libaprutil1-ldap:i386.
Preparing to unpack .../020-libaprutil1-ldap_1.6.3-3+b1_i386.deb ...
Unpacking libaprutil1-ldap:i386 (1.6.3-3+b1) ...
Selecting previously unselected package libbrotli1:i386.
Preparing to unpack .../021-libbrotli1_1.1.0-2+b6_i386.deb ...
Unpacking libbrotli1:i386 (1.1.0-2+b6) ...
Selecting previously unselected package libkrb5support0:i386.
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Unpacking libkrb5support0:i386 (1.21.3-3) ...
Selecting previously unselected package libcom-err2:i386.
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Unpacking libcom-err2:i386 (1.47.2-1) ...
Selecting previously unselected package libk5crypto3:i386.
Preparing to unpack .../024-libk5crypto3_1.21.3-3_i386.deb ...
Unpacking libk5crypto3:i386 (1.21.3-3) ...
Selecting previously unselected package libkeyutils1:i386.
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Unpacking libkeyutils1:i386 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:i386.
Preparing to unpack .../026-libkrb5-3_1.21.3-3_i386.deb ...
Unpacking libkrb5-3:i386 (1.21.3-3) ...
Selecting previously unselected package libgssapi-krb5-2:i386.
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Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ...
Selecting previously unselected package libunistring5:i386.
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Unpacking libunistring5:i386 (1.3-1) ...
Selecting previously unselected package libidn2-0:i386.
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Unpacking libidn2-0:i386 (2.3.7-2+b1) ...
Selecting previously unselected package libnghttp2-14:i386.
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Unpacking libnghttp2-14:i386 (1.64.0-1) ...
Selecting previously unselected package libpsl5t64:i386.
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Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ...
Selecting previously unselected package libffi8:i386.
Preparing to unpack .../032-libffi8_3.4.6-1_i386.deb ...
Unpacking libffi8:i386 (3.4.6-1) ...
Selecting previously unselected package libp11-kit0:i386.
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Unpacking libp11-kit0:i386 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:i386.
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Unpacking libtasn1-6:i386 (4.19.0-3+b3) ...
Selecting previously unselected package libgnutls30t64:i386.
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Unpacking libgnutls30t64:i386 (3.8.8-2) ...
Selecting previously unselected package librtmp1:i386.
Preparing to unpack .../036-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ...
Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:i386.
Preparing to unpack .../037-libssh2-1t64_1.11.1-1_i386.deb ...
Unpacking libssh2-1t64:i386 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:i386.
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Unpacking libcurl4t64:i386 (8.11.1-1+b1) ...
Selecting previously unselected package liblua5.4-0:i386.
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Unpacking liblua5.4-0:i386 (5.4.7-1+b2) ...
Selecting previously unselected package libicu72:i386.
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Unpacking libicu72:i386 (72.1-6) ...
Selecting previously unselected package libxml2:i386.
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Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package apache2-bin.
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Unpacking apache2-bin (2.4.62-3+b1) ...
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Unpacking m4 (1.4.19-5) ...
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Unpacking autotools-dev (20220109.1) ...
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Unpacking automake (1:1.16.5-1.3) ...
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Unpacking autopoint (0.22.5-4) ...
Selecting previously unselected package libdebhelper-perl.
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Unpacking libdebhelper-perl (13.23) ...
Selecting previously unselected package libtool.
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Unpacking libtool (2.5.4-2) ...
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Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
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Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
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Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:i386.
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Unpacking libelf1t64:i386 (0.192-4) ...
Selecting previously unselected package dwz.
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Unpacking dwz (0.15-1+b1) ...
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Unpacking gettext (0.22.5-4) ...
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Unpacking intltool-debian (0.35.0+20060710.6) ...
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Unpacking po-debconf (1.0.21+nmu1) ...
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Unpacking debhelper (13.23) ...
Selecting previously unselected package libalgorithm-diff-perl.
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Unpacking libalgorithm-diff-perl (1.201-1) ...
Selecting previously unselected package libdevel-symdump-perl.
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Unpacking libdevel-symdump-perl (2.18-5) ...
Selecting previously unselected package liburi-perl.
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Unpacking liburi-perl (5.30-1) ...
Selecting previously unselected package libencode-locale-perl.
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Unpacking libencode-locale-perl (1.05-3) ...
Selecting previously unselected package libtimedate-perl.
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Unpacking libtimedate-perl (2.3300-2) ...
Selecting previously unselected package libhttp-date-perl.
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Unpacking libhttp-date-perl (6.06-1) ...
Selecting previously unselected package libfile-listing-perl.
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Unpacking libfile-listing-perl (6.16-1) ...
Selecting previously unselected package libhtml-tagset-perl.
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Unpacking libhtml-tagset-perl (3.24-1) ...
Selecting previously unselected package libhtml-parser-perl:i386.
Preparing to unpack .../068-libhtml-parser-perl_3.83-1+b2_i386.deb ...
Unpacking libhtml-parser-perl:i386 (3.83-1+b2) ...
Selecting previously unselected package libhtml-tree-perl.
Preparing to unpack .../069-libhtml-tree-perl_5.07-3_all.deb ...
Unpacking libhtml-tree-perl (5.07-3) ...
Selecting previously unselected package libclone-perl:i386.
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Unpacking libclone-perl:i386 (0.47-1+b1) ...
Selecting previously unselected package libio-html-perl.
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Unpacking libio-html-perl (1.004-3) ...
Selecting previously unselected package liblwp-mediatypes-perl.
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Unpacking liblwp-mediatypes-perl (6.04-2) ...
Selecting previously unselected package libhttp-message-perl.
Preparing to unpack .../073-libhttp-message-perl_7.00-2_all.deb ...
Unpacking libhttp-message-perl (7.00-2) ...
Selecting previously unselected package libhttp-cookies-perl.
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Unpacking libhttp-cookies-perl (6.11-1) ...
Selecting previously unselected package libhttp-negotiate-perl.
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Unpacking libhttp-negotiate-perl (6.01-2) ...
Selecting previously unselected package perl-openssl-defaults:i386.
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Unpacking perl-openssl-defaults:i386 (7+b2) ...
Selecting previously unselected package libnet-ssleay-perl:i386.
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Unpacking libnet-ssleay-perl:i386 (1.94-2) ...
Selecting previously unselected package libio-socket-ssl-perl.
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Unpacking libio-socket-ssl-perl (2.089-1) ...
Selecting previously unselected package libnet-http-perl.
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Unpacking libnet-http-perl (6.23-1) ...
Selecting previously unselected package liblwp-protocol-https-perl.
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Unpacking liblwp-protocol-https-perl (6.14-1) ...
Selecting previously unselected package libtry-tiny-perl.
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Unpacking libtry-tiny-perl (0.32-1) ...
Selecting previously unselected package libwww-robotrules-perl.
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Unpacking libwww-robotrules-perl (6.02-1) ...
Selecting previously unselected package libwww-perl.
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Unpacking libwww-perl (6.77-1) ...
Selecting previously unselected package libapache2-mod-perl2.
Preparing to unpack .../084-libapache2-mod-perl2_2.0.13-2+b2_i386.deb ...
Unpacking libapache2-mod-perl2 (2.0.13-2+b2) ...
Selecting previously unselected package libdbi-perl:i386.
Preparing to unpack .../085-libdbi-perl_1.645-1+b1_i386.deb ...
Unpacking libdbi-perl:i386 (1.645-1+b1) ...
Selecting previously unselected package libapache-dbi-perl.
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Unpacking libapache-dbi-perl (1.12-3) ...
Selecting previously unselected package libio-string-perl.
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Unpacking libio-string-perl (1.08-4) ...
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Unpacking libdata-stag-perl (0.14-3) ...
Selecting previously unselected package libbio-perl-perl.
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Unpacking libbio-perl-perl (1.7.8-1) ...
Selecting previously unselected package libbio-db-biofetch-perl.
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Unpacking libbio-db-biofetch-perl (1.7.3-4) ...
Selecting previously unselected package libcgi-pm-perl.
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Unpacking libcgi-pm-perl (4.67-1) ...
Selecting previously unselected package libbio-db-gff-perl.
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Unpacking libbio-db-gff-perl (1.7.4-1) ...
Selecting previously unselected package libcapture-tiny-perl.
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Unpacking libcapture-tiny-perl (0.48-2) ...
Selecting previously unselected package libclass-data-inheritable-perl.
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-seqfeature-perl_1.7.5-1_source.changes
dpkg-buildpackage: info: source package libbio-db-seqfeature-perl
dpkg-buildpackage: info: source version 1.7.5-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::DB::SeqFeature
Writing MYMETA.yml and MYMETA.json
dh_auto_build
make -j11
make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5'
cp lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
cp lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm
cp lib/Bio/DB/SeqFeature/Store/memory.pm blib/lib/Bio/DB/SeqFeature/Store/memory.pm
cp lib/Bio/DB/SeqFeature/Store/LoadHelper.pm blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm
cp lib/Bio/DB/SeqFeature/Store.pm blib/lib/Bio/DB/SeqFeature/Store.pm
cp lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm
cp lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm
cp lib/Bio/DB/SeqFeature/Store/berkeleydb.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm
cp lib/Bio/DB/SeqFeature/NormalizedFeature.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm
cp lib/Bio/DB/SeqFeature/Segment.pm blib/lib/Bio/DB/SeqFeature/Segment.pm
cp lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm
cp lib/Bio/DB/SeqFeature/Store/Loader.pm blib/lib/Bio/DB/SeqFeature/Store/Loader.pm
cp lib/Bio/DB/SeqFeature.pm blib/lib/Bio/DB/SeqFeature.pm
cp lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm
cp lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm
cp lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm
cp lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm
cp lib/Bio/DB/SeqFeature/Store/bdb.pm blib/lib/Bio/DB/SeqFeature/Store/bdb.pm
cp lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm
cp lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm blib/lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
cp bin/bp_seqfeature_delete blib/script/bp_seqfeature_delete
cp bin/bp_seqfeature_gff3 blib/script/bp_seqfeature_gff3
cp bin/bp_seqfeature_load blib/script/bp_seqfeature_load
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_delete
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_gff3
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_load
Manifying 1 pod document
Manifying 20 pod documents
make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5'
dh_auto_test
make -j11 test TEST_VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t .........
1..21
ok 1 - Bio/DB/SeqFeature.pm loaded ok
ok 2 - Bio/DB/SeqFeature/NormalizedFeature.pm loaded ok
ok 3 - Bio/DB/SeqFeature/NormalizedFeatureI.pm loaded ok
ok 4 - Bio/DB/SeqFeature/NormalizedTableFeatureI.pm loaded ok
ok 5 - Bio/DB/SeqFeature/Segment.pm loaded ok
ok 6 - Bio/DB/SeqFeature/Store.pm loaded ok
ok 7 - Bio/DB/SeqFeature/Store/DBI/Iterator.pm loaded ok
ok 8 - Bio/DB/SeqFeature/Store/DBI/MariaDB.pm loaded ok
ok 9 - Bio/DB/SeqFeature/Store/DBI/mysql.pm loaded ok
ok 10 - Bio/DB/SeqFeature/Store/FeatureFileLoader.pm loaded ok
ok 11 - Bio/DB/SeqFeature/Store/GFF2Loader.pm loaded ok
ok 12 - Bio/DB/SeqFeature/Store/GFF3Loader.pm loaded ok
ok 13 - Bio/DB/SeqFeature/Store/LoadHelper.pm loaded ok
ok 14 - Bio/DB/SeqFeature/Store/Loader.pm loaded ok
ok 15 - Bio/DB/SeqFeature/Store/bdb.pm loaded ok
ok 16 - Bio/DB/SeqFeature/Store/berkeleydb.pm loaded ok
ok 17 - Bio/DB/SeqFeature/Store/berkeleydb3.pm loaded ok
ok 18 - Bio/DB/SeqFeature/Store/memory.pm loaded ok
ok 19 - bin/bp_seqfeature_delete compiled ok
ok 20 - bin/bp_seqfeature_gff3 compiled ok
ok 21 - bin/bp_seqfeature_load compiled ok
ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author
t/SeqFeature.t .........
1..116
ok 1 - use Bio::SeqFeature::Generic;
ok 2 - use Bio::DB::SeqFeature::Store;
ok 3 - use Bio::DB::SeqFeature::Store::GFF3Loader;
ok 4 - use Bio::Root::IO;
ok 5 - use Bio::DB::Fasta;
ok 6 - use File::Copy;
ok 7
ok 8
ok 9
ok 10 - adding a feature
ok 11
ok 12
ok 13
ok 14 - adding a feature with no primary_id
ok 15
ok 16 - searching for a feature that shouldnt exist
ok 17 - simple type
ok 18 - base type with colon
ok 19 - base type alone
ok 20 - queried types are not interpolated
ok 21
ok 22
ok 23 - An object of class 'Bio::DB::GFF::Typename' isa 'Bio::DB::GFF::Typename'
ok 24 - feature deletion
ok 25
ok 26
ok 27 - adding subfeatures
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44 - feature names should be case insensitive
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64 - base type
ok 65 - base:source type
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73 - An object of class 'Bio::Location::Split' isa 'Bio::Location::Split'
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101
ok 102 - keyword search; 1 term
ok 103 - keyword search; 2 terms
ok 104
ok 105
ok 106
ok 107
ok 108
ok 109
ok 110
ok 111 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors
ok 112 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors
ok 113 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors
ok 114 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors
ok 115 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors
ok 116 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors
ok
All tests successful.
Files=4, Tests=137, 3 wallclock secs ( 0.04 usr 0.02 sys + 2.50 cusr 0.28 csys = 2.84 CPU)
Result: PASS
make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-db-seqfeature-perl/
make -j11 install DESTDIR=/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5'
Manifying 1 pod document
Manifying 20 pod documents
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeature.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Segment.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeatureI.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/Loader.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF3Loader.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/bdb.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF2Loader.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb3.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/SQLite.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/MariaDB.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Pg.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Iterator.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/mysql.pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man1/bp_seqfeature_load.1p
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::bdb.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::Loader.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::MariaDB.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Pg.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::memory.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::FeatureFileLoader.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::SQLite.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF2Loader.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb3.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeature.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Segment.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature.3pm
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_gff3
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_load
Installing /build/reproducible-path/libbio-db-seqfeature-perl-1.7.5/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_delete
make[1]: Leaving directory '/build/reproducible-path/libbio-db-seqfeature-perl-1.7.5'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-db-seqfeature-perl' in '../libbio-db-seqfeature-perl_1.7.5-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo
dpkg-genchanges --build=binary -O../libbio-db-seqfeature-perl_1.7.5-1_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/29539 and its subdirectories
I: Current time: Thu Jan 23 16:26:48 -12 2025
I: pbuilder-time-stamp: 1737692808
Fri Jan 24 04:26:49 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net.
Fri Jan 24 04:26:49 UTC 2025 I: Preparing to do remote build '2' on ionos16-i386.debian.net.
Fri Jan 24 04:27:19 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net.
Fri Jan 24 04:27:20 UTC 2025 I: libbio-db-seqfeature-perl_1.7.5-1_i386.changes:
Format: 1.8
Date: Fri, 11 Oct 2024 12:41:29 +0200
Source: libbio-db-seqfeature-perl
Binary: libbio-db-seqfeature-perl
Architecture: all
Version: 1.7.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
libbio-db-seqfeature-perl - Normalized feature for use with Bio::DB::SeqFeature::Store
Changes:
libbio-db-seqfeature-perl (1.7.5-1) unstable; urgency=medium
.
* New upstream version 1.7.5
* d/control: declare compliance to standards version 4.7.0.
* d/copyright: update upstream copyright year.
* d/control: add myself to uploaders.
Checksums-Sha1:
f8e449cb6ffa379170e614495cfe8e8733277ba6 166068 libbio-db-seqfeature-perl_1.7.5-1_all.deb
a69aaacfc0439bf21424a979f9bfbd26a250aea1 7300 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo
Checksums-Sha256:
01f386cc6ed1f869e7e400daea4f5bd12156946b0a8b6cc7513526629c5b4a9a 166068 libbio-db-seqfeature-perl_1.7.5-1_all.deb
f3a8928cd500edc637419bc0665429301ef9884046aca39a23f9534536135c50 7300 libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo
Files:
6268e32aa8f7c8ed028c3468fed2082b 166068 perl optional libbio-db-seqfeature-perl_1.7.5-1_all.deb
d868e9d27e24639db812929d6b7ebf81 7300 perl optional libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo
Fri Jan 24 04:27:21 UTC 2025 I: diffoscope 285 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_3-51689.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.X4CFpJOu/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.X4CFpJOu/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.X4CFpJOu/libbio-db-seqfeature-perl_1.7.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.X4CFpJOu/b1/libbio-db-seqfeature-perl_1.7.5-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.X4CFpJOu/b2/libbio-db-seqfeature-perl_1.7.5-1_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.326s)
0.326s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.014s)
0.014s 12 calls diffoscope.comparators.binary.FilesystemFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 618ms
CPU time consumed: 619ms
Fri Jan 24 04:27:22 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists.
Fri Jan 24 04:27:22 UTC 2025 I: libbio-db-seqfeature-perl from trixie built successfully and reproducibly on i386.
Fri Jan 24 04:27:22 UTC 2025 I: Submitting .buildinfo files to external archives:
Fri Jan 24 04:27:22 UTC 2025 I: Submitting 8.0K b1/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc
Fri Jan 24 04:27:23 UTC 2025 I: Submitting 8.0K b2/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc
Fri Jan 24 04:27:24 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Jan 24 04:27:24 UTC 2025 I: Done submitting .buildinfo files.
Fri Jan 24 04:27:24 UTC 2025 I: Removing signed libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc files:
removed './b1/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc'
removed './b2/libbio-db-seqfeature-perl_1.7.5-1_i386.buildinfo.asc'