Wed Jan 22 01:44:51 UTC 2025 I: starting to build libpwizlite/trixie/i386 on jenkins on '2025-01-22 01:44'
Wed Jan 22 01:44:51 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/54191/console.log
Wed Jan 22 01:44:51 UTC 2025 I: Downloading source for trixie/libpwizlite=3.0.8-1
--2025-01-22 01:44:51-- http://deb.debian.org/debian/pool/main/libp/libpwizlite/libpwizlite_3.0.8-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2218 (2.2K) [text/prs.lines.tag]
Saving to: ‘libpwizlite_3.0.8-1.dsc’
0K .. 100% 300M=0s
2025-01-22 01:44:51 (300 MB/s) - ‘libpwizlite_3.0.8-1.dsc’ saved [2218/2218]
Wed Jan 22 01:44:51 UTC 2025 I: libpwizlite_3.0.8-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: libpwizlite
Binary: libpwizlite-dev, libpwizlite3t64
Architecture: any
Version: 3.0.8-1
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Uploaders: Filippo Rusconi <lopippo@debian.org>
Homepage: https://salsa.debian.org/debichem-team/libpwizlite
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/debichem-team/libpwizlite
Vcs-Git: https://salsa.debian.org/debichem-team/libpwizlite.git
Build-Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev
Package-List:
libpwizlite-dev deb libdevel optional arch=any
libpwizlite3t64 deb libs optional arch=any
Checksums-Sha1:
e55fd47cc2236ffd2034b5ca424f25d3a42f6ef7 832233 libpwizlite_3.0.8.orig.tar.gz
7f5b228b88010083e51115029b412032482b4f2e 8624 libpwizlite_3.0.8-1.debian.tar.xz
Checksums-Sha256:
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713d81eec247d82ba52860db9d8bc2e7ba87b8d5084a83bd979b414f438c2375 8624 libpwizlite_3.0.8-1.debian.tar.xz
Files:
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398a7eaa1e0c1af2e7cc4416601b9120 8624 libpwizlite_3.0.8-1.debian.tar.xz
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Wed Jan 22 01:44:51 UTC 2025 I: Checking whether the package is not for us
Wed Jan 22 01:44:51 UTC 2025 I: Starting 1st build on remote node ionos12-i386.debian.net.
Wed Jan 22 01:44:51 UTC 2025 I: Preparing to do remote build '1' on ionos12-i386.debian.net.
Wed Jan 22 01:48:50 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Jan 21 13:44:54 -12 2025
I: pbuilder-time-stamp: 1737510294
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [libpwizlite_3.0.8-1.dsc]
I: copying [./libpwizlite_3.0.8.orig.tar.gz]
I: copying [./libpwizlite_3.0.8-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./libpwizlite_3.0.8-1.dsc: unsupported subcommand
dpkg-source: info: extracting libpwizlite in libpwizlite-3.0.8
dpkg-source: info: unpacking libpwizlite_3.0.8.orig.tar.gz
dpkg-source: info: unpacking libpwizlite_3.0.8-1.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/28304/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='b9da49d8d21f423fb1bfcfba92de48a2'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='28304'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ndLoWp5V/pbuilderrc_bibC --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ndLoWp5V/b1 --logfile b1/build.log libpwizlite_3.0.8-1.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos12-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/28304/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, dh-exec, dpkg-dev (>= 1.18.25), libboost-dev, libboost-thread-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-chrono-dev, zlib1g-dev, python3-docutils, libhdf5-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19842 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on dh-exec; however:
Package dh-exec is not installed.
pbuilder-satisfydepends-dummy depends on libboost-dev; however:
Package libboost-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however:
Package libboost-thread-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however:
Package libboost-filesystem-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however:
Package libboost-iostreams-dev is not installed.
pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however:
Package libboost-chrono-dev is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-docutils; however:
Package python3-docutils is not installed.
pbuilder-satisfydepends-dummy depends on libhdf5-dev; however:
Package libhdf5-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libicu-dev{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnsl2{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-docutils{a} python3-minimal{a} python3-roman{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} xml-core{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix python3-pil python3-pygments wget
0 packages upgraded, 151 newly installed, 0 to remove and 0 not upgraded.
Need to get 94.0 MB of archives. After unpacking 494 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.8-5 [816 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.8-5 [2241 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.8-1 [26.9 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-6 [257 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.6-1 [21.2 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 13 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.8-5 [1969 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.8-5 [677 kB]
Get: 22 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.8-1 [9792 B]
Get: 23 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.8-1 [27.9 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 sgml-base all 1.31 [15.4 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-6 [876 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-4 [201 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-4 [723 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.31.4-2 [2267 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.4-1.1 [390 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8+b1 [20.9 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8+b1 [61.3 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 libp11-kit0 i386 0.25.5-3 [423 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 libtasn1-6 i386 4.19.0-3+b3 [51.1 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 libgnutls30t64 i386 3.8.8-2 [1451 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.11.1-1+b1 [393 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 librhash1 i386 1.4.5-1 [144 kB]
Get: 62 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.48.0-7 [157 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 cmake i386 3.31.4-2 [13.1 MB]
Get: 64 http://deb.debian.org/debian trixie/main i386 comerr-dev i386 2.1-1.47.2-1 [56.2 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.23 [90.6 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-2 [539 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 71 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-4 [1632 kB]
Get: 74 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 debhelper all 13.23 [919 kB]
Get: 77 http://deb.debian.org/debian trixie/main i386 dh-exec i386 0.30 [26.2 kB]
Get: 78 http://deb.debian.org/debian trixie/main i386 xml-core all 0.19 [20.1 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 hdf5-helpers i386 1.14.5+repack-3 [26.6 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 icu-devtools i386 72.1-6 [218 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 libgssrpc4t64 i386 1.21.3-3 [63.1 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 libkadm5clnt-mit12 i386 1.21.3-3 [43.2 kB]
Get: 84 http://deb.debian.org/debian trixie/main i386 libkdb5-10t64 i386 1.21.3-3 [45.1 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 libkadm5srv-mit12 i386 1.21.3-3 [57.0 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 krb5-multidev i386 1.21.3-3 [126 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 libaec0 i386 1.1.3-1+b1 [25.0 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libsz2 i386 1.1.3-1+b1 [8128 B]
Get: 89 http://deb.debian.org/debian trixie/main i386 libaec-dev i386 1.1.3-1+b1 [23.0 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libboost1.83-dev i386 1.83.0-4 [10.6 MB]
Get: 91 http://deb.debian.org/debian trixie/main i386 libboost-atomic1.83.0 i386 1.83.0-4 [234 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 libboost-atomic1.83-dev i386 1.83.0-4 [235 kB]
Get: 93 http://deb.debian.org/debian trixie/main i386 libboost-chrono1.83.0t64 i386 1.83.0-4 [241 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libboost-chrono1.83-dev i386 1.83.0-4 [247 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 libboost-chrono-dev i386 1.83.0.2+b2 [4228 B]
Get: 96 http://deb.debian.org/debian trixie/main i386 libboost-date-time1.83.0 i386 1.83.0-4 [230 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 libboost-serialization1.83.0 i386 1.83.0-4 [343 kB]
Get: 98 http://deb.debian.org/debian trixie/main i386 libboost-serialization1.83-dev i386 1.83.0-4 [386 kB]
Get: 99 http://deb.debian.org/debian trixie/main i386 libboost-date-time1.83-dev i386 1.83.0-4 [239 kB]
Get: 100 http://deb.debian.org/debian trixie/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B]
Get: 101 http://deb.debian.org/debian trixie/main i386 libboost-filesystem1.83.0 i386 1.83.0-4 [287 kB]
Get: 102 http://deb.debian.org/debian trixie/main i386 libboost-system1.83.0 i386 1.83.0-4 [230 kB]
Get: 103 http://deb.debian.org/debian trixie/main i386 libboost-system1.83-dev i386 1.83.0-4 [231 kB]
Get: 104 http://deb.debian.org/debian trixie/main i386 libboost-filesystem1.83-dev i386 1.83.0-4 [305 kB]
Get: 105 http://deb.debian.org/debian trixie/main i386 libboost-filesystem-dev i386 1.83.0.2+b2 [3640 B]
Get: 106 http://deb.debian.org/debian trixie/main i386 libboost-regex1.83.0 i386 1.83.0-4 [329 kB]
Get: 107 http://deb.debian.org/debian trixie/main i386 libicu-dev i386 72.1-6 [10.6 MB]
Get: 108 http://deb.debian.org/debian trixie/main i386 libboost-regex1.83-dev i386 1.83.0-4 [347 kB]
Get: 109 http://deb.debian.org/debian trixie/main i386 libboost-iostreams1.83-dev i386 1.83.0-4 [264 kB]
Get: 110 http://deb.debian.org/debian trixie/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B]
Get: 111 http://deb.debian.org/debian trixie/main i386 libboost-thread1.83.0 i386 1.83.0-4 [271 kB]
Get: 112 http://deb.debian.org/debian trixie/main i386 libboost-thread1.83-dev i386 1.83.0-4 [279 kB]
Get: 113 http://deb.debian.org/debian trixie/main i386 libboost-thread-dev i386 1.83.0.2+b2 [3632 B]
Get: 114 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b6 [313 kB]
Get: 115 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2+b1 [126 kB]
Get: 116 http://deb.debian.org/debian trixie/main i386 libkrb5-dev i386 1.21.3-3 [15.7 kB]
Get: 117 http://deb.debian.org/debian trixie/main i386 libldap-dev i386 2.6.9+dfsg-1 [328 kB]
Get: 118 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB]
Get: 119 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB]
Get: 120 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB]
Get: 121 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB]
Get: 122 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB]
Get: 123 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-3 [329 kB]
Get: 124 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-3 [661 kB]
Get: 125 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB]
Get: 126 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.22.0-1 [632 kB]
Get: 127 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.8-2 [447 kB]
Get: 128 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.8-2 [447 kB]
Get: 129 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-3 [208 kB]
Get: 130 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.19.0-3+b3 [102 kB]
Get: 131 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10-1+b1 [1334 kB]
Get: 132 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.8-2 [1453 kB]
Get: 133 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB]
Get: 134 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB]
Get: 135 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.4.0-2 [2842 kB]
Get: 136 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB]
Get: 137 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-2 [354 kB]
Get: 138 http://deb.debian.org/debian trixie/main i386 libcurl4-openssl-dev i386 8.11.1-1+b1 [522 kB]
Get: 139 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-12 [735 kB]
Get: 140 http://deb.debian.org/debian trixie/main i386 libhdf5-310 i386 1.14.5+repack-3 [1327 kB]
Get: 141 http://deb.debian.org/debian trixie/main i386 libhdf5-cpp-310 i386 1.14.5+repack-3 [140 kB]
Get: 142 http://deb.debian.org/debian trixie/main i386 libhdf5-fortran-310 i386 1.14.5+repack-3 [119 kB]
Get: 143 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-310 i386 1.14.5+repack-3 [81.6 kB]
Get: 144 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-fortran-310 i386 1.14.5+repack-3 [45.7 kB]
Get: 145 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-cpp-310 i386 1.14.5+repack-3 [24.9 kB]
Get: 146 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB]
Get: 147 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo-dev i386 1:2.1.5-3+b1 [305 kB]
Get: 148 http://deb.debian.org/debian trixie/main i386 libjpeg-dev i386 1:2.1.5-3+b1 [72.2 kB]
Get: 149 http://deb.debian.org/debian trixie/main i386 libhdf5-dev i386 1.14.5+repack-3 [3319 kB]
Get: 150 http://deb.debian.org/debian trixie/main i386 python3-roman all 4.2-1 [10.4 kB]
Get: 151 http://deb.debian.org/debian trixie/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB]
Fetched 94.0 MB in 1s (70.3 MB/s)
Preconfiguring packages ...
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Unpacking libpython3.12-minimal:i386 (3.12.8-5) ...
Selecting previously unselected package libexpat1:i386.
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Unpacking libexpat1:i386 (2.6.4-1) ...
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Unpacking python3.12-minimal (3.12.8-5) ...
Setting up libpython3.12-minimal:i386 (3.12.8-5) ...
Setting up libexpat1:i386 (2.6.4-1) ...
Setting up python3.12-minimal (3.12.8-5) ...
Selecting previously unselected package python3-minimal.
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Unpacking python3-minimal (3.12.8-1) ...
Selecting previously unselected package media-types.
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Unpacking media-types (10.1.0) ...
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Unpacking netbase (6.4) ...
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Unpacking tzdata (2024b-6) ...
Selecting previously unselected package libffi8:i386.
Preparing to unpack .../04-libffi8_3.4.6-1_i386.deb ...
Unpacking libffi8:i386 (3.4.6-1) ...
Selecting previously unselected package libkrb5support0:i386.
Preparing to unpack .../05-libkrb5support0_1.21.3-3_i386.deb ...
Unpacking libkrb5support0:i386 (1.21.3-3) ...
Selecting previously unselected package libcom-err2:i386.
Preparing to unpack .../06-libcom-err2_1.47.2-1_i386.deb ...
Unpacking libcom-err2:i386 (1.47.2-1) ...
Selecting previously unselected package libk5crypto3:i386.
Preparing to unpack .../07-libk5crypto3_1.21.3-3_i386.deb ...
Unpacking libk5crypto3:i386 (1.21.3-3) ...
Selecting previously unselected package libkeyutils1:i386.
Preparing to unpack .../08-libkeyutils1_1.6.3-4_i386.deb ...
Unpacking libkeyutils1:i386 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:i386.
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Unpacking libkrb5-3:i386 (1.21.3-3) ...
Selecting previously unselected package libgssapi-krb5-2:i386.
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Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ...
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Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:i386.
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Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libnsl2:i386.
Preparing to unpack .../13-libnsl2_1.3.0-3+b3_i386.deb ...
Unpacking libnsl2:i386 (1.3.0-3+b3) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../14-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:i386.
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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:i386 (8.2-6) ...
Selecting previously unselected package libpython3.12-stdlib:i386.
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Setting up python3-minimal (3.12.8-1) ...
Selecting previously unselected package python3.
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Unpacking python3 (3.12.8-1) ...
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Unpacking libarchive13t64:i386 (3.7.4-1.1) ...
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Unpacking libbrotli1:i386 (1.1.0-2+b6) ...
Selecting previously unselected package libunistring5:i386.
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Unpacking libunistring5:i386 (1.3-1) ...
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Selecting previously unselected package libsasl2-modules-db:i386.
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Setting up libelf1t64:i386 (0.192-4) ...
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Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8+b1) ...
Setting up tzdata (2024b-6) ...
Current default time zone: 'Etc/UTC'
Local time is now: Wed Jan 22 01:45:34 UTC 2025.
Universal Time is now: Wed Jan 22 01:45:34 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libboost-atomic1.83.0:i386 (1.83.0-4) ...
Setting up libboost-serialization1.83.0:i386 (1.83.0-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libunbound8:i386 (1.22.0-1) ...
Setting up libpkgconf3:i386 (1.8.1-4) ...
Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-3) ...
Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ...
Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-3+b1) ...
Setting up libboost-chrono1.83.0t64:i386 (1.83.0-4) ...
Setting up libjsoncpp26:i386 (1.9.6-3) ...
Setting up libproc2-0:i386 (2:4.0.4-6) ...
Setting up comerr-dev:i386 (2.1-1.47.2-1) ...
Setting up libunistring5:i386 (1.3-1) ...
Setting up libssl-dev:i386 (3.4.0-2) ...
Setting up autopoint (0.22.5-4) ...
Setting up icu-devtools (72.1-6) ...
Setting up pkgconf-bin (1.8.1-4) ...
Setting up libk5crypto3:i386 (1.21.3-3) ...
Setting up libsasl2-2:i386 (2.1.28+dfsg1-8+b1) ...
Setting up libgfortran5:i386 (14.2.0-12) ...
Setting up libboost-atomic1.83-dev:i386 (1.83.0-4) ...
Setting up autoconf (2.72-3) ...
Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:i386 (3.4.6-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:i386 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-6) ...
Setting up libtasn1-6:i386 (4.19.0-3+b3) ...
Setting up netbase (6.4) ...
Setting up sgml-base (1.31) ...
Setting up cmake-data (3.31.4-2) ...
Setting up librhash1:i386 (1.4.5-1) ...
Setting up libkrb5-3:i386 (1.21.3-3) ...
Setting up libboost-dev:i386 (1.83.0.2+b2) ...
Setting up libboost-system1.83-dev:i386 (1.83.0-4) ...
Setting up libssh2-1t64:i386 (1.11.1-1) ...
Setting up libtasn1-6-dev:i386 (4.19.0-3+b3) ...
Setting up readline-common (8.2-6) ...
Setting up libicu-dev:i386 (72.1-6) ...
Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libldap2:i386 (2.6.9+dfsg-1) ...
Setting up libbrotli-dev:i386 (1.1.0-2+b6) ...
Setting up libsz2:i386 (1.1.3-1+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up gettext (0.22.5-4) ...
Setting up libgmp-dev:i386 (2:6.3.0+dfsg-3) ...
Setting up libboost-chrono1.83-dev:i386 (1.83.0-4) ...
Setting up nettle-dev:i386 (3.10-1+b1) ...
Setting up libtool (2.5.4-2) ...
Setting up libboost-chrono-dev:i386 (1.83.0.2+b2) ...
Setting up libaec-dev:i386 (1.1.3-1+b1) ...
Setting up libboost-serialization1.83-dev:i386 (1.83.0-4) ...
Setting up libjpeg-dev:i386 (1:2.1.5-3+b1) ...
Setting up libidn2-0:i386 (2.3.7-2+b1) ...
Setting up libboost-filesystem1.83-dev:i386 (1.83.0-4) ...
Setting up pkgconf:i386 (1.8.1-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libboost-date-time1.83-dev:i386 (1.83.0-4) ...
Setting up libldap-dev:i386 (2.6.9+dfsg-1) ...
Setting up libp11-kit0:i386 (0.25.5-3) ...
Setting up libgssapi-krb5-2:i386 (1.21.3-3) ...
Setting up libboost-regex1.83-dev:i386 (1.83.0-4) ...
Setting up libssh2-1-dev:i386 (1.11.1-1) ...
Setting up libidn2-dev:i386 (2.3.7-2+b1) ...
Setting up libreadline8t64:i386 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up xml-core (0.19) ...
Setting up libarchive13t64:i386 (3.7.4-1.1) ...
Setting up libboost-filesystem-dev:i386 (1.83.0.2+b2) ...
Setting up libp11-kit-dev:i386 (0.25.5-3) ...
Setting up libgnutls30t64:i386 (3.8.8-2) ...
Setting up libboost-thread1.83-dev:i386 (1.83.0-4) ...
Setting up libgnutls-openssl27t64:i386 (3.8.8-2) ...
Setting up libnghttp2-dev:i386 (1.64.0-1) ...
Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ...
Setting up libboost-iostreams1.83-dev:i386 (1.83.0-4) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ...
Setting up libboost-iostreams-dev:i386 (1.83.0.2+b2) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpsl-dev:i386 (0.21.2-1.1+b1) ...
Setting up libgnutls-dane0t64:i386 (3.8.8-2) ...
Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libgssrpc4t64:i386 (1.21.3-3) ...
Setting up libnsl2:i386 (1.3.0-3+b3) ...
Setting up libboost-thread-dev:i386 (1.83.0.2+b2) ...
Setting up libkadm5clnt-mit12:i386 (1.21.3-3) ...
Setting up libgnutls28-dev:i386 (3.8.8-2) ...
Setting up libpython3.12-stdlib:i386 (3.12.8-5) ...
Setting up libcurl4t64:i386 (8.11.1-1+b1) ...
Setting up libkdb5-10t64:i386 (1.21.3-3) ...
Setting up python3.12 (3.12.8-5) ...
Setting up debhelper (13.23) ...
Setting up dh-exec (0.30) ...
Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libhdf5-310:i386 (1.14.5+repack-3) ...
Setting up libkadm5srv-mit12:i386 (1.21.3-3) ...
Setting up cmake (3.31.4-2) ...
Setting up libhdf5-fortran-310:i386 (1.14.5+repack-3) ...
Setting up libpython3-stdlib:i386 (3.12.8-1) ...
Setting up krb5-multidev:i386 (1.21.3-3) ...
Setting up libhdf5-cpp-310:i386 (1.14.5+repack-3) ...
Setting up libhdf5-hl-310:i386 (1.14.5+repack-3) ...
Setting up python3 (3.12.8-1) ...
Setting up libkrb5-dev:i386 (1.21.3-3) ...
Setting up python3-roman (4.2-1) ...
Setting up libcurl4-openssl-dev:i386 (8.11.1-1+b1) ...
Setting up libhdf5-hl-cpp-310:i386 (1.14.5+repack-3) ...
Setting up libhdf5-hl-fortran-310:i386 (1.14.5+repack-3) ...
Setting up libhdf5-dev (1.14.5+repack-3) ...
update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Processing triggers for libc-bin (2.40-5) ...
Processing triggers for sgml-base (1.31) ...
Setting up docutils-common (0.21.2+dfsg-2) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.21.2+dfsg-2) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.36.2-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/reproducible-path/libpwizlite-3.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwizlite_3.0.8-1_source.changes
dpkg-buildpackage: info: source package libpwizlite
dpkg-buildpackage: info: source version 3.0.8-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Filippo Rusconi <lopippo@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
fakeroot debian/rules clean
dh clean --build-system=cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8'
rm -f debian/libpwizlite.3
rm -rf debian/includes
rm -rf obj-i386-linux-gnu
dh_clean
make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8'
dh_autoreconf_clean -O--build-system=cmake
dh_clean -O--build-system=cmake
debian/rules build
dh build --build-system=cmake
dh_update_autotools_config -O--build-system=cmake
dh_autoreconf -O--build-system=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8'
dh_auto_configure -- \
-DCMAKE_INSTALL_PREFIX="/usr" \
-DCMAKE_BUILD_TYPE=release
cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release ..
-- The CXX compiler identification is GNU 14.2.0
-- The C compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- CMAKE_LIBRARY_ARCHITECTURE: i386-linux-gnu
-- Set CMAKE_INSTALL_PREFIX to /usr
-- Install directory prefix: /usr
-- CMAKE_INSTALL_FULL_LIBDIR: /usr/lib/i386-linux-gnu
-- CMAKE_INSTALL_FULL_INCLUDEDIR: /usr/include
[1;31mConfiguring build for project libpwizlite[m
-- Set CMAKE_CXX_STANDARD to 17 (required)
-- [1;32mCMAKE_CXX_COMPILER: /usr/bin/c++[m
-- Setting definition -Wno-unknown-pragmas.[m
-- [1;32mSetting definition -Wall.[m
-- [1;32mSetting definition -Wextra.[m
-- [1;31mCMAKE_SOURCE_DIR: /build/reproducible-path/libpwizlite-3.0.8[m
UNIX non APPLE environment
Please run the configuration like this:
cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug ../development
-- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.3.1")
CMake Warning (dev) at CMakeStuff/toolchains/unix-toolchain.cmake:12 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:106 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams thread filesystem chrono
-- Found HDF5: /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/i386-linux-gnu/libcrypto.so;/usr/lib/i386-linux-gnu/libcurl.so;/usr/lib/i386-linux-gnu/libpthread.a;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libdl.a;/usr/lib/i386-linux-gnu/libm.so (found version "1.14.5")
-- Found HDF5: /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/i386-linux-gnu/libcrypto.so;/usr/lib/i386-linux-gnu/libcurl.so;/usr/lib/i386-linux-gnu/libpthread.a;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libdl.a;/usr/lib/i386-linux-gnu/libm.so (found version "1.14.5") found components: CXX
-- HDF5_CXX_LIBRARIES: /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/i386-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/i386-linux-gnu/libcrypto.so;/usr/lib/i386-linux-gnu/libcurl.so;/usr/lib/i386-linux-gnu/libpthread.a;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libdl.a;/usr/lib/i386-linux-gnu/libm.so
-- HDF5_CXX_INCLUDE_DIRS: /usr/include/hdf5/serial
-- [1;32mStarting configuration of libpwizlite[m
-- [1;33mThe build toolchain is: Linux
[m
-- CMAKE_CURRENT_BINARY_DIR: /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu
-- [1;33mCMAKE_BUILD_TYPE: release.[m
-- Adding subdirectory src for PROJECT: libpwizlite
-- [1;33mSetting -Wall.[m
-- Boost_LIBRARIES found 1_83
-- Boost_INCLUDES: /usr/include
-- Boost_LIB_DIRS: /usr/lib/i386-linux-gnu
STATUS: Now managing the CPack process
-- Configuring done (3.2s)
-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu
rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3
sh debian/make-included-headers-hierarchy.sh
baseName: enum.hpp
dirName: boost
'boost/enum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum.hpp'
baseName: windows.hpp
dirName: boost/nowide
'boost/nowide/windows.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/windows.hpp'
baseName: fstream.hpp
dirName: boost/nowide
'boost/nowide/fstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/fstream.hpp'
baseName: iostream.hpp
dirName: boost/nowide
'boost/nowide/iostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/iostream.hpp'
baseName: args.hpp
dirName: boost/nowide
'boost/nowide/args.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/args.hpp'
baseName: cstdio.hpp
dirName: boost/nowide
'boost/nowide/cstdio.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdio.hpp'
baseName: stackstring.hpp
dirName: boost/nowide
'boost/nowide/stackstring.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/stackstring.hpp'
baseName: convert.hpp
dirName: boost/nowide
'boost/nowide/convert.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/convert.hpp'
baseName: cenv.hpp
dirName: boost/nowide
'boost/nowide/cenv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cenv.hpp'
baseName: filebuf.hpp
dirName: boost/nowide
'boost/nowide/filebuf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/filebuf.hpp'
baseName: config.hpp
dirName: boost/nowide
'boost/nowide/config.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/config.hpp'
baseName: system.hpp
dirName: boost/nowide
'boost/nowide/system.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/system.hpp'
baseName: cstdlib.hpp
dirName: boost/nowide
'boost/nowide/cstdlib.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/nowide/cstdlib.hpp'
baseName: base.hpp
dirName: boost/enum
'boost/enum/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/base.hpp'
baseName: bitfield.hpp
dirName: boost/enum
'boost/enum/bitfield.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/bitfield.hpp'
baseName: macros.hpp
dirName: boost/enum
'boost/enum/macros.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/macros.hpp'
baseName: iterator.hpp
dirName: boost/enum
'boost/enum/iterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/enum/iterator.hpp'
baseName: foreach_field.hpp
dirName: boost
'boost/foreach_field.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/foreach_field.hpp'
baseName: arbitrary_positional_facade.hpp
dirName: boost/iostreams
'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp'
baseName: base64.hpp
dirName: boost/iostreams/filter
'boost/iostreams/filter/base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp'
baseName: singleton.hpp
dirName: boost/utility
'boost/utility/singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/singleton.hpp'
baseName: mutexed_singleton.hpp
dirName: boost/utility
'boost/utility/mutexed_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp'
baseName: singleton_manager.hpp
dirName: boost/utility/detail
'boost/utility/detail/singleton_manager.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp'
baseName: restricted.hpp
dirName: boost/utility/detail
'boost/utility/detail/restricted.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/restricted.hpp'
baseName: member_dereference.hpp
dirName: boost/utility/detail
'boost/utility/detail/member_dereference.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp'
baseName: thread_specific_singleton.hpp
dirName: boost/utility
'boost/utility/thread_specific_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp'
baseName: SpectrumList_Demux.hpp
dirName: pwiz/analysis/spectrum_processing
'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp'
baseName: DemuxDataProcessingStrings.hpp
dirName: pwiz/analysis/demux
'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp'
baseName: MinimumPepXML.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp'
baseName: PeakData.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/PeakData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp'
baseName: FrequencyDataTestData.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp'
baseName: CalibrationParameters.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp'
baseName: SampleDatum.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/SampleDatum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp'
baseName: FrequencyData.hpp
dirName: pwiz/data/misc
'pwiz/data/misc/FrequencyData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp'
baseName: Index.hpp
dirName: pwiz/data/common
'pwiz/data/common/Index.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Index.hpp'
baseName: MemoryIndex.hpp
dirName: pwiz/data/common
'pwiz/data/common/MemoryIndex.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp'
baseName: diff_std.hpp
dirName: pwiz/data/common
'pwiz/data/common/diff_std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp'
baseName: CVTranslator.hpp
dirName: pwiz/data/common
'pwiz/data/common/CVTranslator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp'
baseName: cv.hpp
dirName: pwiz/data/common
'pwiz/data/common/cv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/cv.hpp'
baseName: obo.hpp
dirName: pwiz/data/common
'pwiz/data/common/obo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/obo.hpp'
baseName: BinaryIndexStream.hpp
dirName: pwiz/data/common
'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp'
baseName: ParamTypes.hpp
dirName: pwiz/data/common
'pwiz/data/common/ParamTypes.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp'
baseName: Unimod.hpp
dirName: pwiz/data/common
'pwiz/data/common/Unimod.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp'
baseName: SpectrumList_MGF.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp'
baseName: Connection_mzMLb.hpp
dirName: pwiz/data/msdata/mzmlb
'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp'
baseName: MemoryMRUCache.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp'
baseName: RAMPAdapter.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp'
baseName: SpectrumList_mzML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp'
baseName: Serializer_mz5.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp'
baseName: TextWriter.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/TextWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp'
baseName: examples.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/examples.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp'
baseName: MSDataMerger.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp'
baseName: SpectrumList_MSn.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp'
baseName: References.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/References.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/References.hpp'
baseName: SHA1OutputObserver.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp'
baseName: Index_mzML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Index_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp'
baseName: SpectrumListWrapper.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp'
baseName: SpectrumList_BTDX.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp'
baseName: DefaultReaderList.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp'
baseName: Serializer_MSn.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp'
baseName: SpectrumList_mzXML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp'
baseName: SpectrumWorkerThreads.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp'
baseName: Version.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp'
baseName: MSData.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MSData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp'
baseName: IO.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/IO.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp'
baseName: ChromatogramList_mzML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp'
baseName: Reader.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Reader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp'
baseName: SpectrumIterator.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp'
baseName: LegacyAdapter.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp'
baseName: Serializer_MGF.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp'
baseName: SpectrumListBase.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp'
baseName: Serializer_mzXML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp'
baseName: MSNumpress.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MSNumpress.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp'
baseName: ChromatogramList_mz5.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp'
baseName: SpectrumInfo.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp'
baseName: SpectrumList_mz5.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp'
baseName: Serializer_mzML.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp'
baseName: Diff.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/Diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp'
baseName: BinaryDataEncoder.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp'
baseName: MSDataFile.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/MSDataFile.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp'
baseName: ChromatogramListBase.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp'
baseName: SpectrumListCache.hpp
dirName: pwiz/data/msdata
'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp'
baseName: Version.hpp
dirName: pwiz
'pwiz/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/Version.hpp'
baseName: Std.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp'
baseName: Exception.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Exception.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp'
baseName: unit.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/unit.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp'
baseName: IntegerSet.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/IntegerSet.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp'
baseName: shared_map.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/shared_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp'
baseName: CharIndexedVector.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp'
baseName: BinaryData.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/BinaryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp'
baseName: Once.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Once.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp'
baseName: Base64.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp'
baseName: COMInitializer.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/COMInitializer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp'
baseName: almost_equal.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/almost_equal.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp'
baseName: DateTime.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/DateTime.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp'
baseName: optimized_lexical_cast.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp'
baseName: Stream.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Stream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp'
baseName: mru_list.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/mru_list.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp'
baseName: MSIHandler.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/MSIHandler.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp'
baseName: SHA1_ostream.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp'
baseName: IterationListener.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/IterationListener.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp'
baseName: ClickwrapPrompter.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp'
baseName: Environment.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Environment.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp'
baseName: Export.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Export.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp'
baseName: VendorReaderTestHarness.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp'
baseName: endian.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/endian.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp'
baseName: String.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/String.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/String.hpp'
baseName: virtual_map.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/virtual_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp'
baseName: TabReader.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/TabReader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp'
baseName: Container.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Container.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp'
baseName: automation_vector.h
dirName: pwiz/utility/misc
'pwiz/utility/misc/automation_vector.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h'
baseName: Singleton.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp'
baseName: Timer.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Timer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp'
baseName: Image.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Image.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp'
baseName: cpp_cli_utilities.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp'
baseName: SHA1.h
dirName: pwiz/utility/misc
'pwiz/utility/misc/SHA1.h' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h'
baseName: Filesystem.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/Filesystem.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp'
baseName: random_access_compressed_ifstream.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp'
baseName: SHA1Calculator.hpp
dirName: pwiz/utility/misc
'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp'
baseName: Parabola.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/Parabola.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp'
baseName: Types.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/Types.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Types.hpp'
baseName: Stats.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/Stats.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp'
baseName: round.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/round.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/round.hpp'
baseName: MatrixInverse.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/MatrixInverse.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp'
baseName: qr.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/qr.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/qr.hpp'
baseName: HouseholderQR.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/HouseholderQR.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp'
baseName: LinearLeastSquares.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp'
baseName: LinearSolver.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/LinearSolver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp'
baseName: OrderedPair.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/OrderedPair.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp'
baseName: MatchedFilter.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/MatchedFilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp'
baseName: erf.hpp
dirName: pwiz/utility/math
'pwiz/utility/math/erf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/math/erf.hpp'
baseName: XMLWriter.hpp
dirName: pwiz/utility/minimxml
'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp'
baseName: SAXParser.hpp
dirName: pwiz/utility/minimxml
'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp'
baseName: MZTolerance.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp'
baseName: IsotopeTable.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp'
baseName: Chemistry.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp'
baseName: IsotopeEnvelopeEstimator.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp'
baseName: IsotopeCalculator.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp'
baseName: ChemistryData.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp'
baseName: MzMobilityWindow.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp'
baseName: Ion.hpp
dirName: pwiz/utility/chemistry
'pwiz/utility/chemistry/Ion.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp'
baseName: copyif.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp'
baseName: base.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp'
baseName: constants.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp'
baseName: scale.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp'
baseName: base.hpp
dirName: pwiz/utility/findmf/base/base/utilities
'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp'
baseName: interpolation.hpp
dirName: pwiz/utility/findmf/base/base/utilities
'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp'
baseName: diff.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp'
baseName: interpolate.hpp
dirName: pwiz/utility/findmf/base/base
'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp'
baseName: determinebinwidth.hpp
dirName: pwiz/utility/findmf/base/resample
'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp'
baseName: breakspec.hpp
dirName: pwiz/utility/findmf/base/resample
'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp'
baseName: bin1d.hpp
dirName: pwiz/utility/findmf/base/resample
'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp'
baseName: determinebinwidth.hpp
dirName: pwiz/utility/findmf/base/resample/utilities
'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp'
baseName: masscomparefunctors.hpp
dirName: pwiz/utility/findmf/base/resample
'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp'
baseName: filter.hpp
dirName: pwiz/utility/findmf/base/filter
'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp'
baseName: preparedata.hpp
dirName: pwiz/utility/findmf/base/filter/utilities
'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp'
baseName: gauss.hpp
dirName: pwiz/utility/findmf/base/filter/utilities
'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp'
baseName: gaussfilter.hpp
dirName: pwiz/utility/findmf/base/filter
'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.8/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp'
make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8'
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cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.8 /build/reproducible-path/libpwizlite-3.0.8/src /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.8 /build/reproducible-path/libpwizlite-3.0.8/src /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp
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cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp
[ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
114 | } else if (init == mask) {
| ~~~~~^~~~~~~
In file included from /usr/include/c++/14/iostream:41,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27:
In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>]',
inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33:
/usr/include/c++/14/ostream:210:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized]
210 | { return _M_insert(__n); }
| ~~~~~~~~~^~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here
346 | long long extrapol;
| ^~~~~~~~
In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>]',
inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26:
/usr/include/c++/14/ostream:210:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized]
210 | { return _M_insert(__n); }
| ~~~~~~~~~^~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here
347 | long long y;
| ^
[ 14%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.hpp:31,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:27:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter]
40 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter]
88 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter]
124 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~^~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~^~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter]
153 | bool shouldReplace(const string& key, CVID value, CVID cvid)
| ~~~~~^~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare]
103 | for (int o=0;o<oboPrefixesSize_;++o)
| ~^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp
[ 18%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Version.cpp
[ 19%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp
[ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp
[ 21%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp
[ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp
[ 24%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp
[ 25%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp
[ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter]
121 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter]
162 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter]
356 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter]
40 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter]
88 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter]
124 | const BaseDiffConfig& config)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:34:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr<std::basic_istream<char> >, const pwiz::msdata::MSData&, bool)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=]
84 | } catch (index_not_found e){
| ^
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter]
128 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter]
212 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter]
239 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter]
282 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter]
302 | virtual Status endElement(const std::string& name, stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter]
701 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter]
702 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter]
710 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter]
736 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter]
754 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter]
778 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter]
779 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter]
796 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter]
797 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter]
885 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/stdexcept:39,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter]
86 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter]
87 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter]
95 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter]
120 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter]
165 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter]
201 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter]
85 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter]
136 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter]
195 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter]
267 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter]
504 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter]
505 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter]
697 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter]
698 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter]
970 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter]
1083 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter]
1359 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter]
1360 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits]
1121 | if ((result >= 0 && result < size()) || s == 0)
| ~~~~~~~^~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf());
| ~~~~~~^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING'
64 | #define BFS_STRING(p) (p).string()
| ^
In file included from /usr/include/boost/filesystem/operations.hpp:20,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string();
| ~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
1129 | path branch_path() const { return parent_path(); }
| ^~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
107 | msd.id = msd.run.id = bfs::basename(filename);
| ~~~~~~~~~~~~~^~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37:
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter]
126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter]
1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const
| ~~~~~^~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter]
133 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter]
136 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter]
1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const
| ~~~~~^~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter]
201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter]
216 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter]
219 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():"");
| ~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter]
267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream<pwiz::msdata::mzmlb::Connection_mzMLb>*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string<char>; size_t = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'unsigned int'} [-Wsign-compare]
1693 | for (int i = 1; i < float_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'unsigned int'} [-Wsign-compare]
1712 | for (int i = 2; i < float_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter]
273 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter]
276 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter]
296 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double, std::allocator<double> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
1774 | for (int i = 1; i < double_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter]
307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double, std::allocator<double> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
1793 | for (int i = 2; i < double_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter]
1627 | void writeMzMLbExtra<BinaryDataArray>(stream<Connection_mzMLb>* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig)
| ~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter]
317 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter]
320 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter]
353 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter]
364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream<pwiz::msdata::mzmlb::Connection_mzMLb>*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string<char>; size_t = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter]
1820 | void writeMzMLbExtra<IntegerDataArray>(stream<Connection_mzMLb>* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig)
| ~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
397 | sourceFile->name = BFS_STRING(p.leaf());
| ~~~~~~^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING'
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string();
| ~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
1129 | path branch_path() const { return parent_path(); }
| ^~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
401 | result.id = result.run.id = bfs::basename(filename);
| ~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter]
380 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter]
383 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter]
410 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter]
429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter]
462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename,
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter]
463 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter]
464 | MSData& result,
| ~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter]
465 | int runIndex,
| ~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter]
466 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter]
488 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter]
533 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter]
536 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList")
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter]
2955 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter]
3085 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ ||
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter]
3333 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.cpp:26735:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare]
103 | for (int o=0;o<oboPrefixesSize_;++o)
| ~^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
582 | if (id.find("controllerType=0 controllerNumber=1") != 0)
| ^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here
587 | case MS_Bruker_Agilent_YEP_nativeID_format:
| ^~~~
[ 29%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o
[ 29%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized]
305 | filterArray<zlib_compressor>(byteBuffer, byteCount,compressed);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here
131 | size_t byteCount;
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized]
305 | filterArray<zlib_compressor>(byteBuffer, byteCount,compressed);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here
132 | const void* byteBuffer;
| ^~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~
[ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_construct.h:61,
from /usr/include/c++/14/bits/stl_tempbuf.h:61,
from /usr/include/c++/14/memory:66,
from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:18,
from /usr/include/boost/shared_ptr.hpp:17,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 34%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp
[ 35%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 36%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector<std::__cxx11::basic_string<char> >&, const Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter]
80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector<string>& results, const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
114 | } else if (init == mask) {
| ~~~~~^~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/c++/14/iostream:41,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:27:
In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>]',
inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:403:33:
/usr/include/c++/14/ostream:210:25: warning: 'extrapol' may be used uninitialized [-Wmaybe-uninitialized]
210 | { return _M_insert(__n); }
| ~~~~~~~~~^~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:346:15: note: 'extrapol' was declared here
346 | long long extrapol;
| ^~~~~~~~
In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>]',
inlined from 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)' at /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:404:26:
/usr/include/c++/14/ostream:210:25: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized]
210 | { return _M_insert(__n); }
| ~~~~~~~~~^~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp: In function 'size_t pwiz::msdata::MSNumpress::decodeLinear(const unsigned char*, size_t, double*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here
347 | long long y;
| ^
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.hpp:30,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/LegacyAdapter.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp
[ 40%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter]
552 | bool useWorkerThreads, bool continueOnError) const
| ~~~~~^~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter]
552 | bool useWorkerThreads, bool continueOnError) const
| ~~~~~^~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:27,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/References.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter]
278 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter]
279 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name));
| ~~~~~~~~~~~~~~^~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
157 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
164 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/boost/filesystem/operations.hpp:20,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
164 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
166 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
172 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
172 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
178 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
178 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
184 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
184 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
190 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
190 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
195 | if (bfs::path(sf.location).leaf() == "AcqData" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
207 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
216 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
222 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
228 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector<pwiz::msdata::{anonymous}::PrecursorInfo> pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter]
454 | const SpectrumListPtr spectrumListPtr,
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
878 | string fileExtension = bal::to_lower_copy(bfs::extension(name));
| ~~~~~~~~~~~~~~^~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter]
1027 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf());
| ~~~~~~~~~~~~~~~~~~~^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING'
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING'
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter]
1156 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter]
1237 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter]
1285 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter]
1353 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 42%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : "";
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27:
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 46%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp
[ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 48%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumInfo.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please
| ~~~~~~~^~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/stdexcept:39,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 51%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder]
337 | mru_list<size_t> taskMRU_;
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder]
334 | bool continueOnError_;
| ^~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder]
60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError)
| ^~~~
[ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter]
121 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter]
162 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter]
356 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 54%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp
[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 57%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.'
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
[ 58%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp
[ 59%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 60%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = double; const_reference = const double&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData<T>::at(size_type) [with T = double; reference = double&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = double]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = double]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = double]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<double>::iterator& pwiz::util::BinaryData<double>::iterator::operator=(const pwiz::util::BinaryData<double>::iterator&)' is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<double>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = double]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<double>::iterator& pwiz::util::BinaryData<double>::iterator::operator=(const pwiz::util::BinaryData<double>::iterator&)' is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<double>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = double]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<double>::const_iterator& pwiz::util::BinaryData<double>::const_iterator::operator=(const pwiz::util::BinaryData<double>::const_iterator&)' is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<double>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = double]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<double>::const_iterator& pwiz::util::BinaryData<double>::const_iterator::operator=(const pwiz::util::BinaryData<double>::const_iterator&)' is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<double>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = double]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = float; const_reference = const float&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData<T>::at(size_type) [with T = float; reference = float&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = float]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = float]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = float]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<float>::iterator& pwiz::util::BinaryData<float>::iterator::operator=(const pwiz::util::BinaryData<float>::iterator&)' is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<float>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = float]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<float>::iterator& pwiz::util::BinaryData<float>::iterator::operator=(const pwiz::util::BinaryData<float>::iterator&)' is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<float>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = float]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<float>::const_iterator& pwiz::util::BinaryData<float>::const_iterator::operator=(const pwiz::util::BinaryData<float>::const_iterator&)' is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<float>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = float]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<float>::const_iterator& pwiz::util::BinaryData<float>::const_iterator::operator=(const pwiz::util::BinaryData<float>::const_iterator&)' is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<float>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = float]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = long long int; const_reference = const long long int&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData<T>::at(size_type) [with T = long long int; reference = long long int&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = long long int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = long long int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = long long int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<long long int>::iterator& pwiz::util::BinaryData<long long int>::iterator::operator=(const pwiz::util::BinaryData<long long int>::iterator&)' is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<long long int>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = long long int]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<long long int>::iterator& pwiz::util::BinaryData<long long int>::iterator::operator=(const pwiz::util::BinaryData<long long int>::iterator&)' is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<long long int>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = long long int]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<long long int>::const_iterator& pwiz::util::BinaryData<long long int>::const_iterator::operator=(const pwiz::util::BinaryData<long long int>::const_iterator&)' is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<long long int>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = long long int]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<long long int>::const_iterator& pwiz::util::BinaryData<long long int>::const_iterator::operator=(const pwiz::util::BinaryData<long long int>::const_iterator&)' is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<long long int>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = long long int]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/iostreams/device/file_descriptor.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp
[ 63%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter]
824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter]
1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
[ 64%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Version.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined
54 | #pragma GCC warning "WIN32 is NOT defined"
| ^~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp
[ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp
[ 68%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp
[ 69%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:24:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 70%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp
In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9,
from /usr/include/boost/function/detail/prologue.hpp:12,
from /usr/include/boost/function.hpp:30,
from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /usr/include/boost/algorithm/string/find_iterator.hpp:24,
from /usr/include/boost/algorithm/string/iter_find.hpp:27,
from /usr/include/boost/algorithm/string/split.hpp:16,
from /usr/include/boost/algorithm/string.hpp:23,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.hpp:31,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:34,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.hpp:30:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 71%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds=]
543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr<std::basic_istream<char> >, const pwiz::msdata::MSData&, bool)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=]
84 | } catch (index_not_found e){
| ^
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:128:47: warning: unused parameter 'position' [-Wunused-parameter]
128 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:212:45: warning: unused parameter 'position' [-Wunused-parameter]
212 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:239:47: warning: unused parameter 'position' [-Wunused-parameter]
239 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:282:45: warning: unused parameter 'position' [-Wunused-parameter]
282 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:302:70: warning: unused parameter 'position' [-Wunused-parameter]
302 | virtual Status endElement(const std::string& name, stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:701:51: warning: unused parameter 'attributes' [-Wunused-parameter]
701 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:702:47: warning: unused parameter 'position' [-Wunused-parameter]
702 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:710:45: warning: unused parameter 'position' [-Wunused-parameter]
710 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:736:47: warning: unused parameter 'position' [-Wunused-parameter]
736 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:754:45: warning: unused parameter 'position' [-Wunused-parameter]
754 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:778:51: warning: unused parameter 'attributes' [-Wunused-parameter]
778 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:779:47: warning: unused parameter 'position' [-Wunused-parameter]
779 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:796:59: warning: unused parameter 'text' [-Wunused-parameter]
796 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:797:45: warning: unused parameter 'position' [-Wunused-parameter]
797 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:885:45: warning: unused parameter 'position' [-Wunused-parameter]
885 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized]
549 | if (inCDATA)
| ^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here
501 | bool inCDATA;
| ^~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.hpp:32,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter]
86 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter]
87 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter]
95 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter]
120 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter]
165 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter]
201 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/stdexcept:39,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::appendSourceFile(const std::string&, pwiz::msdata::MSData&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:65:58: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
65 | sourceFile->id = sourceFile->name = BFS_STRING(p.leaf());
| ~~~~~~^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING'
64 | #define BFS_STRING(p) (p).string()
| ^
In file included from /usr/include/boost/filesystem/operations.hpp:20,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:66:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
66 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string();
| ~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
1129 | path branch_path() const { return parent_path(); }
| ^~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In function 'void pwiz::msdata::{anonymous}::fillInCommonMetadata(const std::string&, pwiz::msdata::MSData&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:107:44: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
107 | msd.id = msd.run.id = bfs::basename(filename);
| ~~~~~~~~~~~~~^~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37:
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter]
126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter]
133 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter]
136 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter]
201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter]
216 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter]
219 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:269:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
269 | return std::string(((bal::to_lower_copy(bfs::extension(filename)) == ".mgf"))?getType():"");
| ~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter]
267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter]
273 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter]
276 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter]
296 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter]
307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter]
317 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter]
320 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter]
353 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter]
364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:397:41: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
397 | sourceFile->name = BFS_STRING(p.leaf());
| ~~~~~~^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING'
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:398:67: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
398 | sourceFile->location = "file:///" + BFS_COMPLETE(p.branch_path()).string();
| ~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
1129 | path branch_path() const { return parent_path(); }
| ^~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:401:46: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
401 | result.id = result.run.id = bfs::basename(filename);
| ~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter]
380 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter]
383 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter]
410 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter]
429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter]
462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename,
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter]
463 | const string& head,
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter]
464 | MSData& result,
| ~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter]
465 | int runIndex,
| ~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter]
466 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector<boost::shared_ptr<pwiz::msdata::MSData> >&, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter]
488 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter]
85 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter]
136 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter]
195 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter]
533 | const std::string& head,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter]
536 | const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter]
267 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter]
504 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter]
505 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter]
697 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter]
698 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter]
970 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter]
1083 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter]
1359 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter]
1360 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream<pwiz::msdata::mzmlb::Connection_mzMLb>*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray; std::string = std::__cxx11::basic_string<char>; size_t = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1693:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'unsigned int'} [-Wsign-compare]
1693 | for (int i = 1; i < float_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1712:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'unsigned int'} [-Wsign-compare]
1712 | for (int i = 2; i < float_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1774:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double, std::allocator<double> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
1774 | for (int i = 1; i < double_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1793:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double, std::allocator<double> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
1793 | for (int i = 2; i < double_data.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1627:142: warning: unused parameter 'writer' [-Wunused-parameter]
1627 | void writeMzMLbExtra<BinaryDataArray>(stream<Connection_mzMLb>* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const BinaryDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig)
| ~~~~~~~~~~~^~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeMzMLbExtra(boost::iostreams::stream<pwiz::msdata::mzmlb::Connection_mzMLb>*, std::string&, size_t&, const std::string&, pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray; std::string = std::__cxx11::basic_string<char>; size_t = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:1820:143: warning: unused parameter 'writer' [-Wunused-parameter]
1820 | void writeMzMLbExtra<IntegerDataArray>(stream<Connection_mzMLb>* mzMLb_os, string& dataset, size_t& offset, const string& encoded, XMLWriter& writer, const IntegerDataArray& binaryDataArray, const BinaryDataEncoder::Config& usedConfig)
| ~~~~~~~~~~~^~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2639:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
2639 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList")
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:2955:47: warning: unused parameter 'position' [-Wunused-parameter]
2955 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3085:47: warning: unused parameter 'position' [-Wunused-parameter]
3085 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3415:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
3415 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ ||
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/IO.cpp:3333:47: warning: unused parameter 'position' [-Wunused-parameter]
3333 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
[ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter]
350 | force_close_handles_to_filepath(const std::string &filepath,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter]
351 | bool closeMemoryMappedSections) noexcept(true)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
686 | bfs::copy_directory(from, to);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/operations.hpp:437:13: note: declared here
437 | inline void copy_directory(path const& from, path const& to)
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
710 | bfs::copy_directory(from, to, ec);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:443:13: note: declared here
443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
764 | bfs::copy_directory(from, to, *ec);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:443:13: note: declared here
443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
766 | bfs::copy_directory(from, to);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:437:13: note: declared here
437 | inline void copy_directory(path const& from, path const& to)
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter 'path' [-Wunused-parameter]
967 | check_path_length(const string &path)
| ~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.hpp:30:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1121:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits]
1121 | if ((result >= 0 && result < size()) || s == 0)
| ~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1232:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter]
1232 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const
| ~~~~~^~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:1299:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter]
1299 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const
| ~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSDataFile.cpp:39:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter]
98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; }
| ~~~~~~~~~~~~~~~~~~~^~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
582 | if (id.find("controllerType=0 controllerNumber=1") != 0)
| ^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.cpp:587:9: note: here
587 | case MS_Bruker_Agilent_YEP_nativeID_format:
| ^~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.hpp:30:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: At global scope:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_construct.h:61,
from /usr/include/c++/14/bits/stl_tempbuf.h:61,
from /usr/include/c++/14/memory:66,
from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:18,
from /usr/include/boost/shared_ptr.hpp:17,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized]
305 | filterArray<zlib_compressor>(byteBuffer, byteCount,compressed);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here
131 | size_t byteCount;
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized]
305 | filterArray<zlib_compressor>(byteBuffer, byteCount,compressed);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here
132 | const void* byteBuffer;
| ^~~~~~~~~~
[ 74%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector<std::__cxx11::basic_string<char> >&, const Config&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Reader.cpp:80:119: warning: unused parameter 'config' [-Wunused-parameter]
80 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector<string>& results, const Config& config) const
| ~~~~~~~~~~~~~~^~~~~~
[ 75%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp
[ 76%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp
[ 78%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 79%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 80%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.hpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.hpp:31:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:32:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.hpp:31:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:32:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter]
278 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter]
279 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter]
552 | bool useWorkerThreads, bool continueOnError) const
| ~~~~~^~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter]
552 | bool useWorkerThreads, bool continueOnError) const
| ~~~~~^~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:27,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::string pwiz::msdata::{anonymous}::translate_SourceFileTypeToRunID(const pwiz::msdata::SourceFile&, pwiz::cv::CVID)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:149:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
149 | string nameExtension = bal::to_lower_copy(bfs::extension(sf.name));
| ~~~~~~~~~~~~~~^~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:33:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:150:65: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
150 | string locationExtension = bal::to_lower_copy(bfs::extension(sf.location));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:157:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
157 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
164 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/boost/filesystem/operations.hpp:20,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:164:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
164 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:166:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
166 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
172 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:172:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
172 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
178 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:178:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
178 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
184 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:184:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
184 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
190 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:190:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
190 | return bfs::basename(bfs::path(sf.location).leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:195:44: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
195 | if (bfs::path(sf.location).leaf() == "AcqData" &&
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:199:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
199 | return bfs::basename(bfs::path(sf.location).parent_path().leaf());
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:207:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
207 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:216:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
216 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:222:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
222 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:228:37: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
228 | return bfs::basename(sf.name);
| ~~~~~~~~~~~~~^~~~~~~~~
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector<pwiz::msdata::{anonymous}::PrecursorInfo> pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:454:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter]
454 | const SpectrumListPtr spectrumListPtr,
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'pwiz::cv::CVID pwiz::msdata::{anonymous}::translate_parentFilenameToSourceFileType(const std::string&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:878:61: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
878 | string fileExtension = bal::to_lower_copy(bfs::extension(name));
| ~~~~~~~~~~~~~~^~~~~~
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1027:47: warning: unused parameter 'position' [-Wunused-parameter]
1027 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
[ 81%] Linking CXX static library libpwizlite.a
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/pwizlite-static.dir/cmake_clean_target.cmake
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'void pwiz::msdata::{anonymous}::fillInMetadata(pwiz::msdata::MSData&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1139:65: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
1139 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).leaf());
| ~~~~~~~~~~~~~~~~~~~^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING'
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1141:79: warning: 'boost::filesystem::path boost::filesystem::path::leaf() const' is deprecated: Use path::filename() instead [-Wdeprecated-declarations]
1141 | msd.id = msd.run.id = BFS_STRING(bfs::path(lcp).parent_path().leaf());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:64:24: note: in definition of macro 'BFS_STRING'
64 | #define BFS_STRING(p) (p).string()
| ^
/usr/include/boost/filesystem/path.hpp:1127:10: note: declared here
1127 | path leaf() const { return filename(); }
| ^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1156:47: warning: unused parameter 'position' [-Wunused-parameter]
1156 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1237:45: warning: unused parameter 'position' [-Wunused-parameter]
1237 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1285:47: warning: unused parameter 'position' [-Wunused-parameter]
1285 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_mzXML.cpp:1353:47: warning: unused parameter 'position' [-Wunused-parameter]
1353 | stream_offset position)
| ~~~~~~~~~~~~~~^~~~~~~~
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-static.dir/link.txt --verbose=1
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.cpp:25:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 82%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.hpp:29:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ar qc libpwizlite.a "CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o"
/usr/bin/ranlib libpwizlite.a
make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu'
[ 82%] Built target pwizlite-static
[ 84%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumListBase.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp: In member function 'void pwiz::msdata::Serializer_MGF::Impl::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:73:61: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations]
73 | string thermoBasename = titleIsThermoDTA ? bfs::basename(thermoFilename) : "";
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:37,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/Serializer_MGF.cpp:27:
/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here
35 | inline std::string basename(const path& p)
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
[ 85%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/common/ParamTypes.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:30:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp
[ 87%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp: In constructor 'pwiz::msdata::mzmlb::Connection_mzMLb::Connection_mzMLb(const std::string&, int, int)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp:142:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
142 | nbytes = (nbytes > chunk_size) ? nbytes : chunk_size; // Set per dataset cache to twice the chunk size please
| ~~~~~~~^~~~~~~~~~~~
[ 89%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 90%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp
[ 91%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1.cpp
[ 92%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
from /usr/include/c++/14/string:47,
from /usr/include/c++/14/stdexcept:39,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Exception.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:28:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter]
769 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter]
853 | virtual void warn_once(const char* msg) const {}
| ~~~~~~~~~~~~^~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:28:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter]
585 | virtual Status processingInstruction(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter]
586 | const std::string& data,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter]
587 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter]
589 | virtual Status startElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter]
590 | const Attributes& attributes,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter]
591 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter]
593 | virtual Status endElement(const std::string& name,
| ~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter]
594 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter]
596 | virtual Status characters(const SAXParser::saxstring& text,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter]
597 | stream_offset position) {return Status::Ok;}
| ~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.hpp:31:
/usr/include/boost/iterator.hpp: At global scope:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Base64.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder]
337 | mru_list<size_t> taskMRU_;
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder]
334 | bool continueOnError_;
| ^~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder]
60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError)
| ^~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/XMLWriter.cpp:25:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 93%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp
[ 95%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.cpp:27:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter]
60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;}
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/SHA1Calculator.cpp:32:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
[ 96%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp
[ 97%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.cpp
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:24:
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
54 | class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
| ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
from /usr/include/c++/14/algorithm:60,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:29:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
88 | class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
| ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
[ 98%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -D_FILE_OFFSET_BITS=64 -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.8/src -I/build/reproducible-path/libpwizlite-3.0.8/src/boost -isystem /usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = double; const_reference = const double&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData<T>::at(size_type) [with T = double; reference = double&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = double]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = double]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = double]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here
498 | PWIZ_API_DECL template class BinaryData<double>;
| ^~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<double>::iterator& pwiz::util::BinaryData<double>::iterator::operator=(const pwiz::util::BinaryData<double>::iterator&)' is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<double>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = double]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<double>::iterator& pwiz::util::BinaryData<double>::iterator::operator=(const pwiz::util::BinaryData<double>::iterator&)' is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<double>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = double]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<double>::const_iterator& pwiz::util::BinaryData<double>::const_iterator::operator=(const pwiz::util::BinaryData<double>::const_iterator&)' is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<double>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = double]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<double>::const_iterator& pwiz::util::BinaryData<double>::const_iterator::operator=(const pwiz::util::BinaryData<double>::const_iterator&)' is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<double>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = double]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = float; const_reference = const float&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData<T>::at(size_type) [with T = float; reference = float&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = float]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = float]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = float]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:499:30: required from here
499 | PWIZ_API_DECL template class BinaryData<float>;
| ^~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<float>::iterator& pwiz::util::BinaryData<float>::iterator::operator=(const pwiz::util::BinaryData<float>::iterator&)' is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<float>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = float]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<float>::iterator& pwiz::util::BinaryData<float>::iterator::operator=(const pwiz::util::BinaryData<float>::iterator&)' is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<float>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = float]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<float>::const_iterator& pwiz::util::BinaryData<float>::const_iterator::operator=(const pwiz::util::BinaryData<float>::const_iterator&)' is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<float>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = float]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<float>::const_iterator& pwiz::util::BinaryData<float>::const_iterator::operator=(const pwiz::util::BinaryData<float>::const_iterator&)' is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<float>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = float]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData<T>::at(size_type) const [with T = long long int; const_reference = const long long int&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
256 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData<T>::at(size_type) [with T = long long int; reference = long long int&; size_type = unsigned int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits]
263 | if (index < 0 || index >= size())
| ~~~~~~^~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl::Impl(void*) [with T = long long int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:58:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
58 | Impl(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData<T>::Impl& pwiz::util::BinaryData<T>::Impl::operator=(void*) [with T = long long int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:72:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter]
72 | Impl& operator=(void* cliNumericArray)
| ~~~~~~^~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData<T>::Impl::cacheIterators(pwiz::util::BinaryData<T>&) [with T = long long int]':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:500:30: required from here
500 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:313:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<long long int>::iterator& pwiz::util::BinaryData<long long int>::iterator::operator=(const pwiz::util::BinaryData<long long int>::iterator&)' is deprecated [-Wdeprecated-copy]
313 | begin_ = iterator(binaryData, true);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<long long int>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = long long int]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:314:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<long long int>::iterator& pwiz::util::BinaryData<long long int>::iterator::operator=(const pwiz::util::BinaryData<long long int>::iterator&)' is deprecated [-Wdeprecated-copy]
314 | end_ = iterator(binaryData, false);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData<long long int>::iterator' has user-provided 'pwiz::util::BinaryData<T>::iterator::iterator(const pwiz::util::BinaryData<T>::iterator&) [with T = long long int]'
113 | iterator(const iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:315:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<long long int>::const_iterator& pwiz::util::BinaryData<long long int>::const_iterator::operator=(const pwiz::util::BinaryData<long long int>::const_iterator&)' is deprecated [-Wdeprecated-copy]
315 | cbegin_ = const_iterator(binaryData, true);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<long long int>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = long long int]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.cpp:316:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData<long long int>::const_iterator& pwiz::util::BinaryData<long long int>::const_iterator::operator=(const pwiz::util::BinaryData<long long int>::const_iterator&)' is deprecated [-Wdeprecated-copy]
316 | cend_ = const_iterator(binaryData, false);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData<long long int>::const_iterator' has user-provided 'pwiz::util::BinaryData<T>::const_iterator::const_iterator(const pwiz::util::BinaryData<T>::const_iterator&) [with T = long long int]'
79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {}
| ^~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:17,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/iostreams/device/file_descriptor.hpp:28,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:69:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:54:21: warning: WIN32 is NOT defined
54 | #pragma GCC warning "WIN32 is NOT defined"
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/lexical_cast.hpp:26,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/optimized_lexical_cast.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Environment.hpp:24,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Std.hpp:29,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter]
824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter]
1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9,
from /usr/include/boost/function/detail/prologue.hpp:12,
from /usr/include/boost/function.hpp:30,
from /usr/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /usr/include/boost/algorithm/string/find_iterator.hpp:24,
from /usr/include/boost/algorithm/string/iter_find.hpp:27,
from /usr/include/boost/algorithm/string/split.hpp:16,
from /usr/include/boost/algorithm/string.hpp:23,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/String.hpp:31,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:34,
from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:26:
/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
10 | BOOST_HEADER_DEPRECATED("<iterator>")
| ^~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:543:61: warning: offset '1' outside bounds of constant string [-Warray-bounds=]
543 | Handler::Status status = wrangler.endElement(buffer.c_str()+1, position);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized]
549 | if (inCDATA)
| ^~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here
501 | bool inCDATA;
| ^~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:350:52: warning: unused parameter 'filepath' [-Wunused-parameter]
350 | force_close_handles_to_filepath(const std::string &filepath,
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:351:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter]
351 | bool closeMemoryMappedSections) noexcept(true)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:686:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
686 | bfs::copy_directory(from, to);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.hpp:36:
/usr/include/boost/filesystem/operations.hpp:437:13: note: declared here
437 | inline void copy_directory(path const& from, path const& to)
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::{anonymous}::copy_recursive(const boost::filesystem::path&, const boost::filesystem::path&, boost::system::error_code&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:710:22: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
710 | bfs::copy_directory(from, to, ec);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:443:13: note: declared here
443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::copy_directory(const boost::filesystem::path&, const boost::filesystem::path&, bool, boost::system::error_code*)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:764:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&, boost::system::error_code&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
764 | bfs::copy_directory(from, to, *ec);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:443:13: note: declared here
443 | inline void copy_directory(path const& from, path const& to, system::error_code& ec) BOOST_NOEXCEPT
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:766:28: warning: 'void boost::filesystem::copy_directory(const path&, const path&)' is deprecated: Use create_directory() instead [-Wdeprecated-declarations]
766 | bfs::copy_directory(from, to);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/filesystem/operations.hpp:437:13: note: declared here
437 | inline void copy_directory(path const& from, path const& to)
| ^~~~~~~~~~~~~~
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)':
/build/reproducible-path/libpwizlite-3.0.8/src/pwiz/utility/misc/Filesystem.cpp:967:33: warning: unused parameter 'path' [-Wunused-parameter]
967 | check_path_length(const string &path)
| ~~~~~~~~~~~~~~^~~~
[100%] Linking CXX shared library libpwizlite.so
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/pwizlite-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.8 "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/mzmlb/Connection_mzMLb.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o" "CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o" -Wl,-rpath,/usr/lib/i386-linux-gnu/hdf5/serial: /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/i386-linux-gnu/libz.so -Wl,--no-as-needed /usr/lib/i386-linux-gnu/hdf5/serial/libhdf5_cpp.so -Wl,--as-needed /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0
cd /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.8 libpwizlite.so.3 libpwizlite.so
make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu'
[100%] Built target pwizlite-shared
make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu'
dh_auto_test -O--build-system=cmake
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dh binary --build-system=cmake
dh_testroot -O--build-system=cmake
dh_prep -O--build-system=cmake
dh_auto_install -O--build-system=cmake
cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/libpwizlite-3.0.8/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.8 -B/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "release"
-- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/i386-linux-gnu/cmake/pwizlite/FindPwizLite.cmake
-- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/i386-linux-gnu/cmake/pwizlite/PwizLiteConfig.cmake
-- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/libpwizlite.pc
-- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8
-- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/i386-linux-gnu/libpwizlite.so.3
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8" to ""
-- Installing: /build/reproducible-path/libpwizlite-3.0.8/debian/tmp/usr/lib/i386-linux-gnu/libpwizlite.a
make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.8/obj-i686-linux-gnu'
dh_install -O--build-system=cmake
dh_installdocs -O--build-system=cmake
dh_installchangelogs -O--build-system=cmake
dh_installman -O--build-system=cmake
dh_installsystemduser -O--build-system=cmake
dh_lintian -O--build-system=cmake
dh_perl -O--build-system=cmake
dh_link -O--build-system=cmake
dh_strip_nondeterminism -O--build-system=cmake
dh_compress -O--build-system=cmake
dh_fixperms -O--build-system=cmake
dh_missing -O--build-system=cmake
dh_dwz -a -O--build-system=cmake
dh_strip -a -O--build-system=cmake
dh_makeshlibs -a -O--build-system=cmake
dh_shlibdeps -a -O--build-system=cmake
dpkg-shlibdeps: warning: symbol H5Tget_size used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Sselect_hyperslab used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Aread used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Pset_fletcher32 used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5check_version used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Dread used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Pget_cache used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Dclose used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Awrite used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: symbol H5Pset_deflate used by debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 found in none of the libraries
dpkg-shlibdeps: warning: 43 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libpwizlite3t64/usr/lib/i386-linux-gnu/libpwizlite.so.3.0.8 was not linked against libhdf5_serial_cpp.so.310 (it uses none of the library's symbols)
dh_installdeb -O--build-system=cmake
dh_gencontrol -O--build-system=cmake
dh_md5sums -O--build-system=cmake
dh_builddeb -O--build-system=cmake
dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.8-1_i386.deb'.
dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.8-1_i386.deb'.
dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.8-1_i386.deb'.
dpkg-genbuildinfo --build=binary -O../libpwizlite_3.0.8-1_i386.buildinfo
dpkg-genchanges --build=binary -O../libpwizlite_3.0.8-1_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/28304 and its subdirectories
I: Current time: Tue Jan 21 13:48:49 -12 2025
I: pbuilder-time-stamp: 1737510529
Wed Jan 22 01:48:50 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net.
Wed Jan 22 01:48:50 UTC 2025 I: Preparing to do remote build '2' on ionos16-i386.debian.net.
Wed Jan 22 01:50:55 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net.
Wed Jan 22 01:50:56 UTC 2025 I: libpwizlite_3.0.8-1_i386.changes:
Format: 1.8
Date: Thu, 16 May 2024 14:24:07 +0200
Source: libpwizlite
Binary: libpwizlite-dev libpwizlite3t64 libpwizlite3t64-dbgsym
Architecture: i386
Version: 3.0.8-1
Distribution: unstable
Urgency: low
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Changed-By: Filippo Rusconi <lopippo@debian.org>
Description:
libpwizlite-dev - Library to load mzML/mzXML files (dev files)
libpwizlite3t64 - Library to load mzML/mzXML files (runtime files)
Changes:
libpwizlite (3.0.8-1) unstable; urgency=low
.
* New upstream version with small glitch.
* Upload to unstable.
Checksums-Sha1:
be90fa59ed017073065f9dd474656700e3b4b73e 1283324 libpwizlite-dev_3.0.8-1_i386.deb
bfdc7f36240362eb817258fb4eb34edc1666a150 12486672 libpwizlite3t64-dbgsym_3.0.8-1_i386.deb
7308d096b39c6a7ef6ea71672c058ddbb875bf19 893012 libpwizlite3t64_3.0.8-1_i386.deb
bec8586dfd5445b22c6d4fc5f9d457602d1f3af2 9375 libpwizlite_3.0.8-1_i386.buildinfo
Checksums-Sha256:
a509a2b831c276c289c08a9bc28fe1601346f4e0e5925e16e56288c6ffdb1d42 1283324 libpwizlite-dev_3.0.8-1_i386.deb
5731c382301fef507164db9c148937ce5457babaa4d9a4bf2a0eb4241fb3a84b 12486672 libpwizlite3t64-dbgsym_3.0.8-1_i386.deb
50f70164d744e6af37d434c1423b6e6c38c349e6822f543206e58a64cff39784 893012 libpwizlite3t64_3.0.8-1_i386.deb
0c3c2cef3e70546190632ae83b3be462290341f495968702d8a83908dad1764e 9375 libpwizlite_3.0.8-1_i386.buildinfo
Files:
175cf019c4b8f4bf7027e4f28c1045c7 1283324 libdevel optional libpwizlite-dev_3.0.8-1_i386.deb
f8470f686d2a70c15c6f390e791227d5 12486672 debug optional libpwizlite3t64-dbgsym_3.0.8-1_i386.deb
05bb01025297f6ca7f14a9bb432b19e5 893012 libs optional libpwizlite3t64_3.0.8-1_i386.deb
32e6735c7f376fc605e3fa81d96c3a8b 9375 libs optional libpwizlite_3.0.8-1_i386.buildinfo
Wed Jan 22 01:50:57 UTC 2025 I: diffoscope 285 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_7-54191.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ndLoWp5V/libpwizlite_3.0.8-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ndLoWp5V/libpwizlite_3.0.8-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ndLoWp5V/libpwizlite_3.0.8-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ndLoWp5V/b1/libpwizlite_3.0.8-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.ndLoWp5V/b2/libpwizlite_3.0.8-1_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.464s)
0.464s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.138s)
0.138s 12 calls diffoscope.comparators.binary.FilesystemFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 774ms
CPU time consumed: 771ms
Wed Jan 22 01:50:58 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists.
Wed Jan 22 01:50:58 UTC 2025 I: libpwizlite from trixie built successfully and reproducibly on i386.
Wed Jan 22 01:50:59 UTC 2025 I: Submitting .buildinfo files to external archives:
Wed Jan 22 01:50:59 UTC 2025 I: Submitting 12K b1/libpwizlite_3.0.8-1_i386.buildinfo.asc
Wed Jan 22 01:51:00 UTC 2025 I: Submitting 12K b2/libpwizlite_3.0.8-1_i386.buildinfo.asc
Wed Jan 22 01:51:01 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Jan 22 01:51:01 UTC 2025 I: Done submitting .buildinfo files.
Wed Jan 22 01:51:01 UTC 2025 I: Removing signed libpwizlite_3.0.8-1_i386.buildinfo.asc files:
removed './b1/libpwizlite_3.0.8-1_i386.buildinfo.asc'
removed './b2/libpwizlite_3.0.8-1_i386.buildinfo.asc'