Sun Mar 16 03:48:09 UTC 2025 I: starting to build mmdb/trixie/i386 on jenkins on '2025-03-16 03:48' Sun Mar 16 03:48:09 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/63379/console.log Sun Mar 16 03:48:09 UTC 2025 I: Downloading source for trixie/mmdb=2.0.22-1 --2025-03-16 03:48:09-- http://deb.debian.org/debian/pool/main/m/mmdb/mmdb_2.0.22-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2018 (2.0K) [text/prs.lines.tag] Saving to: ‘mmdb_2.0.22-1.dsc’ 0K . 100% 283M=0s 2025-03-16 03:48:09 (283 MB/s) - ‘mmdb_2.0.22-1.dsc’ saved [2018/2018] Sun Mar 16 03:48:09 UTC 2025 I: mmdb_2.0.22-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mmdb Binary: libmmdb2-dev, libmmdb2-0 Architecture: any Version: 2.0.22-1 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Andrius Merkys Homepage: https://www.ccp4.ac.uk Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/science-team/mmdb Vcs-Git: https://salsa.debian.org/science-team/mmdb.git Build-Depends: debhelper-compat (= 13) Package-List: libmmdb2-0 deb libs optional arch=any libmmdb2-dev deb libdevel optional arch=any Checksums-Sha1: 69c3b1dd00f5d44ea65b36d4e45e295b9c09ac8f 737837 mmdb_2.0.22.orig.tar.gz 78a7df664a0b0754260cfd2fcb7a387232110f08 2532 mmdb_2.0.22-1.debian.tar.xz Checksums-Sha256: a9646933ce9f34633e1ae4901f2383af0e5318d6490851328f5b6aa06195ab51 737837 mmdb_2.0.22.orig.tar.gz de0ac1063d76a8cfd93e2eb5953b18e83e853b83c816bd3fe5dd1b3b3e3ad71e 2532 mmdb_2.0.22-1.debian.tar.xz Files: 6f6331c863b00602f41ddd3d90447621 737837 mmdb_2.0.22.orig.tar.gz a7227fb3b349133f1b1a92485edf1365 2532 mmdb_2.0.22-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmIfNwMSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHl3oQAJXwG+4ba7Fkgrxtr/VFNbSm5nScx4hW E24RjKSXIXQs3aofWckkBLCzXeYNccEFoiq0XabWaa55cNUrhCGodSQq0FvI664f SDPjxqiOyJ8XMdEdYTNQRtVrRynr0fXA8ujFqczirGP07mjZY0tHPrAZbZEsZBGr HYMVH87MaqnqgFs1AES/a++jW+znm/X9t3rOAzC/FaXpgiY0KM1s9zpc5bld4MIj wxhQ5LbR7fhvOHcXbcTCHAndID/oCXOBpB0BrrVBQaH1xmbb+zd7M2s+eDo5/xTE cszLRibFlAZizSuUEdqWGtn0SdF14hH+mRm9GnXzlJXqLo+mipeXomHhR3zqM7bW CY8cfeNQEo2ZtiwsSOVZhxBTIkEmYoXypWnhmqWzRUlqOVBlgjnP5lIsvl8mY+rQ VVneeX+wvfimx1U80AS5hja3oU1BOgAe+UpR7LojJemsRWJ3kDHEZ2wBNqbKRLvM +JanRfWtpLdMZa6/rdmF6oVCBSG/FFqH/GcoooGeMoZE+WTP9Bj0EVGDXKEU4n9L m70wx2rmrw90fANM5dtT8ceYYf3T5Q9mDwvLJtxlsm71cVrucIXUffNcR8TLsKAo oO+ON1p0R/4q2TKMBOp0W3wh4tmTJUfPtbwOvfuLy3pfDr8HkjhkNqLYMW2U1I29 A3SVoRHJCacB =HsqF -----END PGP SIGNATURE----- Sun Mar 16 03:48:09 UTC 2025 I: Checking whether the package is not for us Sun Mar 16 03:48:09 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net. Sun Mar 16 03:48:09 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Sun Mar 16 03:48:44 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 17 22:11:10 -12 2026 I: pbuilder-time-stamp: 1776507070 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [mmdb_2.0.22-1.dsc] I: copying [./mmdb_2.0.22.orig.tar.gz] I: copying [./mmdb_2.0.22-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mmdb_2.0.22-1.dsc: unsupported subcommand dpkg-source: info: extracting mmdb in mmdb-2.0.22 dpkg-source: info: unpacking mmdb_2.0.22.orig.tar.gz dpkg-source: info: unpacking mmdb_2.0.22-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/63195/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='2aefba3c74874c239c646e8b49d3e5c5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='63195' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bu1zol98/pbuilderrc_72OM --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bu1zol98/b1 --logfile b1/build.log mmdb_2.0.22-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/63195/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19789 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB of archives. After unpacking 78.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-7 [301 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Fetched 20.8 MB in 0s (134 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19789 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-5_i386.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-7_i386.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../23-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b2_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_i386.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.41-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/mmdb-2.0.22/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmdb_2.0.22-1_source.changes dpkg-buildpackage: info: source package mmdb dpkg-buildpackage: info: source version 2.0.22-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --ddeb-migration='libmmdb2-0-dbg (<< 2.0.5-1~)' dh_autoreconf_clean "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_clean "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" debian/rules binary dh binary --ddeb-migration='libmmdb2-0-dbg (<< 2.0.5-1~)' dh_update_autotools_config "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_autoreconf "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:21: warning: AC_OUTPUT should be used without arguments. configure.ac:21: You should run autoupdate. configure.ac:9: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mmdb-2.0.22' dh_auto_configure -- --enable-shared --disable-static ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-shared --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for library containing cos... -lm checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating mmdb2.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/reproducible-path/mmdb-2.0.22' dh_auto_build "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" make -j22 make[1]: Entering directory '/build/reproducible-path/mmdb-2.0.22' make all-am make[2]: Entering directory '/build/reproducible-path/mmdb-2.0.22' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security 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-o mmdb2/mmdb_math_bfgsmin.lo mmdb2/mmdb_math_bfgsmin.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_xml_.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_xml_.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_rwbrook.lo mmdb2/mmdb_rwbrook.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_cryst.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_cryst.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_ficif.lo mmdb2/mmdb_ficif.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_bfgsmin.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_bfgsmin.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_rwbrook.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_rwbrook.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_fft.lo mmdb2/mmdb_math_fft.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_selmngr.lo mmdb2/mmdb_selmngr.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_ficif.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_ficif.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_io_file.lo mmdb2/mmdb_io_file.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_math_graph.lo mmdb2/mmdb_math_graph.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_fft.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_fft.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_selmngr.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_selmngr.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_io_file.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_io_file.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_math_graph.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_math_graph.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mmdb2/mmdb_seqsuperpose.lo mmdb2/mmdb_seqsuperpose.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -c mmdb2/mmdb_seqsuperpose.cpp -fPIC -DPIC -o mmdb2/.libs/mmdb_seqsuperpose.o mmdb2/mmdb_atom.cpp: In member function 'void mmdb::Atom::StandardPDBOut(mmdb::cpstr, mmdb::pstr)': mmdb2/mmdb_atom.cpp:267:45: warning: '-' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] 267 | else if (charge<0) sprintf ( N,"%1i-",mround(-charge) ); | ^ In file included from /usr/include/stdio.h:970, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_chain.h:51, from mmdb2/mmdb_atom.cpp:47: In function 'int sprintf(char*, const char*, ...)', inlined from 'void mmdb::Atom::StandardPDBOut(mmdb::cpstr, mmdb::pstr)' at mmdb2/mmdb_atom.cpp:267:37: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_atom.cpp: In member function 'void mmdb::Atom::StandardPDBOut(mmdb::cpstr, mmdb::pstr)': mmdb2/mmdb_atom.cpp:266:45: warning: '+' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] 266 | if (charge>0) sprintf ( N,"%1i+",mround(charge) ); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'void mmdb::Atom::StandardPDBOut(mmdb::cpstr, mmdb::pstr)' at mmdb2/mmdb_atom.cpp:266:37: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_io_file.cpp: In member function 'void mmdb::io::File::truncate(long int)': mmdb2/mmdb_io_file.cpp:280:18: warning: ignoring return value of 'int truncate(const char*, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 280 | ::truncate ( FName,size ); | ~~~~~~~~~~~^~~~~~~~~~~~~~ mmdb2/mmdb_atom.cpp: In member function 'char* mmdb::Atom::GetAtomIDfmt(mmdb::pstr)': mmdb2/mmdb_atom.cpp:1390:30: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 1390 | sprintf ( S,"%4s[%2s]:%1s",name,element,altLoc ); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* mmdb::Atom::GetAtomIDfmt(mmdb::pstr)' at mmdb2/mmdb_atom.cpp:1390:13: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 11 and 51 bytes into a destination of size 50 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_cryst.cpp: In member function 'int mmdb::Cryst::FixSpaceGroup()': mmdb2/mmdb_cryst.cpp:703:41: warning: '%s' directive writing up to 99 bytes into a region of size 94 [-Wformat-overflow=] 703 | sprintf ( spaceGroupFix,"%c 1 1 %s",spaceGroup[0], | ^~ In file included from /usr/include/stdio.h:970, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_cryst.h:46, from mmdb2/mmdb_cryst.cpp:47: In function 'int sprintf(char*, const char*, ...)', inlined from 'int mmdb::Cryst::FixSpaceGroup()' at mmdb2/mmdb_cryst.cpp:703:17: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 106 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_cryst.cpp: In member function 'int mmdb::Cryst::FixSpaceGroup()': mmdb2/mmdb_cryst.cpp:697:39: warning: '%s' directive writing up to 99 bytes into a region of size 96 [-Wformat-overflow=] 697 | sprintf ( spaceGroupFix,"%c 1 %s 1",spaceGroup[0], | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'int mmdb::Cryst::FixSpaceGroup()' at mmdb2/mmdb_cryst.cpp:697:17: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 106 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_root.cpp: In member function 'int mmdb::Root::GenerateNCSMates()': mmdb2/mmdb_root.cpp:1420:43: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 1420 | sprintf ( chainID,"%s_%i", | ^~ mmdb2/mmdb_root.cpp:1420:39: note: directive argument in the range [1, 2147483647] 1420 | sprintf ( chainID,"%s_%i", | ^~~~~~~ In file included from /usr/include/stdio.h:970, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_root.h:44, from mmdb2/mmdb_root.cpp:44: In function 'int sprintf(char*, const char*, ...)', inlined from 'int mmdb::Root::GenerateNCSMates()' at mmdb2/mmdb_root.cpp:1420:29: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 21 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_math_graph.cpp: In member function 'void mmdb::math::GraphMatch::FreeMemory()': mmdb2/mmdb_math_graph.cpp:1660:18: warning: 'void operator delete [](void*)' called on pointer '*this.mmdb::math::GraphMatch::P' with nonzero offset 4 [-Wfree-nonheap-object] 1660 | delete[] P; | ^ mmdb2/mmdb_model.cpp: In member function 'mmdb::Chain* mmdb::Model::GetChainCreate(const char*, bool)': mmdb2/mmdb_model.cpp:3069:46: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 3069 | if (k) sprintf ( chainID,"%s%i",chID,k-1 ); | ^ In file included from /usr/include/stdio.h:970, from mmdb2/mmdb_io_file.h:42, from mmdb2/mmdb_io_stream.h:42, from mmdb2/mmdb_model.h:57, from mmdb2/mmdb_model.cpp:57: In function 'int sprintf(char*, const char*, ...)', inlined from 'mmdb::Chain* mmdb::Model::GetChainCreate(const char*, bool)' at mmdb2/mmdb_model.cpp:3069:31: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 11) into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_model.cpp: In member function 'void mmdb::Model::MoveChain(mmdb::Chain*&, mmdb::PPAtom, mmdb::PPAtom, int&, int)': mmdb2/mmdb_model.cpp:4645:33: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 4645 | sprintf ( chainID,"%s_%i",m_chain->chainID,chain_ext ); | ^~ mmdb2/mmdb_model.cpp:4645:29: note: directive argument in the range [1, 2147483647] 4645 | sprintf ( chainID,"%s_%i",m_chain->chainID,chain_ext ); | ^~~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'void mmdb::Model::MoveChain(mmdb::Chain*&, mmdb::PPAtom, mmdb::PPAtom, int&, int)' at mmdb2/mmdb_model.cpp:4645:19: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 21 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_model.cpp: In member function 'void mmdb::Model::MoveChain(mmdb::Chain*&, mmdb::PPAtom, mmdb::PPAtom, int&, int)': mmdb2/mmdb_model.cpp:4665:37: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 4665 | else sprintf ( chainID,"%s_%i",m_chain->chainID,k ); | ^~ mmdb2/mmdb_model.cpp:4665:33: note: directive argument in the range [1, 2147483647] 4665 | else sprintf ( chainID,"%s_%i",m_chain->chainID,k ); | ^~~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'void mmdb::Model::MoveChain(mmdb::Chain*&, mmdb::PPAtom, mmdb::PPAtom, int&, int)' at mmdb2/mmdb_model.cpp:4665:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 21 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mmdb2/mmdb_model.cpp: In member function 'void mmdb::Model::MoveChain(mmdb::Chain*&, mmdb::PPAtom, mmdb::PPAtom, int&, int)': mmdb2/mmdb_model.cpp:4663:37: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 0 and 9 [-Wformat-overflow=] 4663 | sprintf ( chainID,"%s_%i_%i",m_chain->chainID, | ^~ mmdb2/mmdb_model.cpp:4663:33: note: directive argument in the range [1, 2147483647] 4663 | sprintf ( chainID,"%s_%i_%i",m_chain->chainID, | ^~~~~~~~~~ mmdb2/mmdb_model.cpp:4663:33: note: directive argument in the range [1, 2147483647] In function 'int sprintf(char*, const char*, ...)', inlined from 'void mmdb::Model::MoveChain(mmdb::Chain*&, mmdb::PPAtom, mmdb::PPAtom, int&, int)' at mmdb2/mmdb_model.cpp:4663:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 5 and 32 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o mmdb2/libmmdb2.la -rpath /usr/lib/i386-linux-gnu mmdb2/hybrid_36.lo mmdb2/mmdb_io_stream.lo mmdb2/mmdb_math_linalg.lo mmdb2/mmdb_symop.lo mmdb2/mmdb_atom.lo mmdb2/mmdb_machine_.lo mmdb2/mmdb_math_rand.lo mmdb2/mmdb_tables.lo mmdb2/mmdb_bondmngr.lo mmdb2/mmdb_manager.lo mmdb2/mmdb_mattype.lo mmdb2/mmdb_title.lo mmdb2/mmdb_chain.lo mmdb2/mmdb_mask.lo mmdb2/mmdb_mmcif_.lo mmdb2/mmdb_uddata.lo mmdb2/mmdb_cifdefs.lo mmdb2/mmdb_math_.lo mmdb2/mmdb_model.lo mmdb2/mmdb_utils.lo mmdb2/mmdb_coormngr.lo mmdb2/mmdb_math_align.lo mmdb2/mmdb_root.lo mmdb2/mmdb_xml_.lo mmdb2/mmdb_cryst.lo mmdb2/mmdb_math_bfgsmin.lo mmdb2/mmdb_rwbrook.lo mmdb2/mmdb_ficif.lo mmdb2/mmdb_math_fft.lo mmdb2/mmdb_selmngr.lo mmdb2/mmdb_io_file.lo mmdb2/mmdb_math_graph.lo mmdb2/mmdb_seqsuperpose.lo -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o mmdb2/.libs/hybrid_36.o mmdb2/.libs/mmdb_io_stream.o mmdb2/.libs/mmdb_math_linalg.o mmdb2/.libs/mmdb_symop.o mmdb2/.libs/mmdb_atom.o mmdb2/.libs/mmdb_machine_.o mmdb2/.libs/mmdb_math_rand.o mmdb2/.libs/mmdb_tables.o mmdb2/.libs/mmdb_bondmngr.o mmdb2/.libs/mmdb_manager.o mmdb2/.libs/mmdb_mattype.o mmdb2/.libs/mmdb_title.o mmdb2/.libs/mmdb_chain.o mmdb2/.libs/mmdb_mask.o mmdb2/.libs/mmdb_mmcif_.o mmdb2/.libs/mmdb_uddata.o mmdb2/.libs/mmdb_cifdefs.o mmdb2/.libs/mmdb_math_.o mmdb2/.libs/mmdb_model.o mmdb2/.libs/mmdb_utils.o mmdb2/.libs/mmdb_coormngr.o mmdb2/.libs/mmdb_math_align.o mmdb2/.libs/mmdb_root.o mmdb2/.libs/mmdb_xml_.o mmdb2/.libs/mmdb_cryst.o mmdb2/.libs/mmdb_math_bfgsmin.o mmdb2/.libs/mmdb_rwbrook.o mmdb2/.libs/mmdb_ficif.o mmdb2/.libs/mmdb_math_fft.o mmdb2/.libs/mmdb_selmngr.o mmdb2/.libs/mmdb_io_file.o mmdb2/.libs/mmdb_math_graph.o mmdb2/.libs/mmdb_seqsuperpose.o -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmdb-2.0.22=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-soname -Wl,libmmdb2.so.0 -o mmdb2/.libs/libmmdb2.so.0.0.0 libtool: link: (cd "mmdb2/.libs" && rm -f "libmmdb2.so.0" && ln -s "libmmdb2.so.0.0.0" "libmmdb2.so.0") libtool: link: (cd "mmdb2/.libs" && rm -f "libmmdb2.so" && ln -s "libmmdb2.so.0.0.0" "libmmdb2.so") libtool: link: ( cd "mmdb2/.libs" && rm -f "libmmdb2.la" && ln -s "../libmmdb2.la" "libmmdb2.la" ) make[2]: Leaving directory '/build/reproducible-path/mmdb-2.0.22' make[1]: Leaving directory '/build/reproducible-path/mmdb-2.0.22' dh_auto_test "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" make -j22 check "TESTSUITEFLAGS=-j22 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/mmdb-2.0.22' make[1]: Leaving directory '/build/reproducible-path/mmdb-2.0.22' create-stamp debian/debhelper-build-stamp dh_testroot "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_prep "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_auto_install "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" make -j1 install DESTDIR=/build/reproducible-path/mmdb-2.0.22/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/mmdb-2.0.22' make[2]: Entering directory '/build/reproducible-path/mmdb-2.0.22' /usr/bin/mkdir -p '/build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c mmdb2/libmmdb2.la '/build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c mmdb2/.libs/libmmdb2.so.0.0.0 /build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/lib/i386-linux-gnu/libmmdb2.so.0.0.0 libtool: install: (cd /build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmmdb2.so.0.0.0 libmmdb2.so.0 || { rm -f libmmdb2.so.0 && ln -s libmmdb2.so.0.0.0 libmmdb2.so.0; }; }) libtool: install: (cd /build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmmdb2.so.0.0.0 libmmdb2.so || { rm -f libmmdb2.so && ln -s libmmdb2.so.0.0.0 libmmdb2.so; }; }) libtool: install: /usr/bin/install -c mmdb2/.libs/libmmdb2.lai /build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/lib/i386-linux-gnu/libmmdb2.la libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 mmdb2.pc '/build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/mkdir -p '/build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/include/mmdb2' /usr/bin/install -c -m 644 mmdb2/hybrid_36.h mmdb2/mmdb_io_file.h mmdb2/mmdb_math_graph.h mmdb2/mmdb_seqsuperpose.h mmdb2/mmdb_atom.h mmdb2/mmdb_io_stream.h mmdb2/mmdb_math_linalg.h mmdb2/mmdb_symop.h mmdb2/mmdb_bondmngr.h mmdb2/mmdb_machine_.h mmdb2/mmdb_math_rand.h mmdb2/mmdb_tables.h mmdb2/mmdb_chain.h mmdb2/mmdb_manager.h mmdb2/mmdb_mattype.h mmdb2/mmdb_title.h mmdb2/mmdb_cifdefs.h mmdb2/mmdb_mask.h mmdb2/mmdb_mmcif_.h mmdb2/mmdb_uddata.h mmdb2/mmdb_coormngr.h mmdb2/mmdb_math_.h mmdb2/mmdb_model.h mmdb2/mmdb_utils.h mmdb2/mmdb_cryst.h mmdb2/mmdb_math_align.h mmdb2/mmdb_root.h mmdb2/mmdb_xml_.h mmdb2/mmdb_defs.h mmdb2/mmdb_math_bfgsmin.h mmdb2/mmdb_rwbrook.h mmdb2/mmdb_ficif.h mmdb2/mmdb_math_fft.h mmdb2/mmdb_selmngr.h '/build/reproducible-path/mmdb-2.0.22/debian/tmp/usr/include/mmdb2' make[2]: Leaving directory '/build/reproducible-path/mmdb-2.0.22' make[1]: Leaving directory '/build/reproducible-path/mmdb-2.0.22' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mmdb-2.0.22' # libmmdb2-0 dh_installdocs -p libmmdb2-0 README dh_install -p libmmdb2-0 usr/lib/*/libmmdb2.so.* # libmmdb2-dev dh_install -p libmmdb2-dev usr/include/mmdb2/* dh_install -p libmmdb2-dev usr/lib/*/libmmdb2*.so dh_install -p libmmdb2-dev usr/lib/*/pkgconfig/mmdb2.pc make[1]: Leaving directory '/build/reproducible-path/mmdb-2.0.22' dh_installdocs "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_installchangelogs "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_installsystemduser "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_perl "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_link "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_strip_nondeterminism "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_compress "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_fixperms "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_missing "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_dwz -a "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_strip -a "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_makeshlibs -a "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_shlibdeps -a "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_installdeb "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_gencontrol "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_md5sums "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dh_builddeb "-O--ddeb-migration=libmmdb2-0-dbg (<< 2.0.5-1~)" dpkg-deb: building package 'libmmdb2-dev' in '../libmmdb2-dev_2.0.22-1_i386.deb'. dpkg-deb: building package 'libmmdb2-0' in '../libmmdb2-0_2.0.22-1_i386.deb'. dpkg-deb: building package 'libmmdb2-0-dbgsym' in '../libmmdb2-0-dbgsym_2.0.22-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../mmdb_2.0.22-1_i386.buildinfo dpkg-genchanges --build=binary -O../mmdb_2.0.22-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/63195 and its subdirectories I: Current time: Fri Apr 17 22:11:42 -12 2026 I: pbuilder-time-stamp: 1776507102 Sun Mar 16 03:48:44 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Sun Mar 16 03:48:44 UTC 2025 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Sun Mar 16 03:49:45 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net. Sun Mar 16 03:49:46 UTC 2025 I: mmdb_2.0.22-1_i386.changes: Format: 1.8 Date: Wed, 02 Mar 2022 03:56:11 -0500 Source: mmdb Binary: libmmdb2-0 libmmdb2-0-dbgsym libmmdb2-dev Architecture: i386 Version: 2.0.22-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: libmmdb2-0 - macromolecular coordinate library - runtime libmmdb2-dev - macromolecular coordinate library - development files Changes: mmdb (2.0.22-1) unstable; urgency=medium . * New upstream version 2.0.22 * Updating copyright years. * Updating homepage, trimming license text. Checksums-Sha1: 9a4a61939255cb45459a725ad7e4bc8c8ca08b0e 726852 libmmdb2-0-dbgsym_2.0.22-1_i386.deb 281d6729062646e0013abe76695d22d87ba8496f 370172 libmmdb2-0_2.0.22-1_i386.deb 64e0e1d62ecf029280676b5491ae0b8cc6abbf14 92636 libmmdb2-dev_2.0.22-1_i386.deb d8bceaf46a84090cd34acd127fdf00a03f9425a8 5095 mmdb_2.0.22-1_i386.buildinfo Checksums-Sha256: cbf044c5419921e271cd912044cc1076f5dd354fdba32325659b1cc06971d4f4 726852 libmmdb2-0-dbgsym_2.0.22-1_i386.deb fbacda928a145e72688700c3784dea9000d7755ea2d96175ad5d37208d46e2a4 370172 libmmdb2-0_2.0.22-1_i386.deb e7e856701f33ca77c7b49efccfda3519b22242d90d5bd5c2dafe45d07ed62f92 92636 libmmdb2-dev_2.0.22-1_i386.deb 00a6f341c43768e077386f68dd813bd66c9272e78bdf4b1ad5e53dc0a967bb1a 5095 mmdb_2.0.22-1_i386.buildinfo Files: 9898eedcfc3880be39a43260c95b3ee5 726852 debug optional libmmdb2-0-dbgsym_2.0.22-1_i386.deb 8b1277159fd8ba2e89a0869f71d0e1a8 370172 libs optional libmmdb2-0_2.0.22-1_i386.deb a978722e9730a497111582a31905c8f8 92636 libdevel optional libmmdb2-dev_2.0.22-1_i386.deb 18f33e62881e5d8006e1c4841b8975c7 5095 science optional mmdb_2.0.22-1_i386.buildinfo Sun Mar 16 03:49:47 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_8-63379.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bu1zol98/mmdb_2.0.22-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bu1zol98/mmdb_2.0.22-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bu1zol98/mmdb_2.0.22-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bu1zol98/b1/mmdb_2.0.22-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.bu1zol98/b2/mmdb_2.0.22-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 239ms CPU time consumed: 239ms Sun Mar 16 03:49:49 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sun Mar 16 03:49:49 UTC 2025 I: mmdb from trixie built successfully and reproducibly on i386. Sun Mar 16 03:49:50 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Mar 16 03:49:50 UTC 2025 I: Submitting 8.0K b1/mmdb_2.0.22-1_i386.buildinfo.asc Sun Mar 16 03:49:51 UTC 2025 I: Submitting 8.0K b2/mmdb_2.0.22-1_i386.buildinfo.asc Sun Mar 16 03:49:51 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Mar 16 03:49:51 UTC 2025 I: Done submitting .buildinfo files. Sun Mar 16 03:49:51 UTC 2025 I: Removing signed mmdb_2.0.22-1_i386.buildinfo.asc files: removed './b1/mmdb_2.0.22-1_i386.buildinfo.asc' removed './b2/mmdb_2.0.22-1_i386.buildinfo.asc'