Wed Feb 26 06:37:09 UTC 2025 I: starting to build mrbayes/trixie/i386 on jenkins on '2025-02-26 06:36' Wed Feb 26 06:37:09 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/58905/console.log Wed Feb 26 06:37:09 UTC 2025 I: Downloading source for trixie/mrbayes=3.2.7a-7 --2025-02-26 06:37:09-- http://deb.debian.org/debian/pool/main/m/mrbayes/mrbayes_3.2.7a-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2184 (2.1K) [text/prs.lines.tag] Saving to: ‘mrbayes_3.2.7a-7.dsc’ 0K .. 100% 355M=0s 2025-02-26 06:37:09 (355 MB/s) - ‘mrbayes_3.2.7a-7.dsc’ saved [2184/2184] Wed Feb 26 06:37:10 UTC 2025 I: mrbayes_3.2.7a-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mrbayes Binary: mrbayes, mrbayes-mpi, mrbayes-doc Architecture: any all Version: 3.2.7a-7 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://mrbayes.csit.fsu.edu/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/mrbayes Vcs-Git: https://salsa.debian.org/med-team/mrbayes.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libreadline-dev, mpi-default-dev, libhmsbeagle-dev, autoconf-archive, pkg-config Package-List: mrbayes deb science optional arch=any mrbayes-doc deb doc optional arch=all mrbayes-mpi deb science optional arch=any Checksums-Sha1: 3073ebd54fe7f4e8db88918f061b2856ee4bf0d9 9819346 mrbayes_3.2.7a.orig.tar.gz 99911ffc510775938111912889d2da7745b83cc9 7380 mrbayes_3.2.7a-7.debian.tar.xz Checksums-Sha256: 3eed2e3b1d9e46f265b6067a502a89732b6f430585d258b886e008e846ecc5c6 9819346 mrbayes_3.2.7a.orig.tar.gz 58f4e433e222389b50b62dbb92ed4667c7c5ed19c258b3802f1bbe1da988aa84 7380 mrbayes_3.2.7a-7.debian.tar.xz Files: 504236626ce9a2de1066a8520672f0cc 9819346 mrbayes_3.2.7a.orig.tar.gz 3a68c8efba2dcdf1502e2378ed7ff21b 7380 mrbayes_3.2.7a-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWj540RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG/kQ/9G3rB+YHqnesvCJ0pA6E8mJ8v2Q0DSiTF sMwFzhWFLrTaBKW37P68WSlecn3XydmKyZCCk8RWGH18bIKKGPk/DScZoFhWntdN cwKTzhoMcmnDIHqs/vpZvX9gTJEe/uGfflT3h6Rpi165rymLIGlfioxzJ4GYwWta qx8HDlKJPCl4qJcjKV48iTnqG6n/X3xlXlHUwFeTRglinClD4bwmEFS6aEKbySXh DJ4+cTlM9wO1iAnF47sVMlpRAJ95zbPXrKmQvZBoNf8eCLMEAVkiP6R9TZk5sxRU c8Txaf+a6eAZLGN9vP1yoyIFXz78F8ihT5QckxZvWvA+MkmEQFOYE0/M87sYWiqX xt7NQbXsDqbAcMsXoo0KzQEe3x1Px6SByHIpFwo248ejby+OqUTzczRIvwFDp3qK iwHhyhE0VjWGfvQ5HN35q0SnkAPnDgFRQEBuiZ1eJs7qfbboGspUWOn2zIx1FEwa L56gEtq49QZ9fGvVomX3luRnSLsHu3gd0T3bl1Oz8IEa/835qK2uxSJ4kPTrVJV5 I9u0LHSMSKHtMtHUom70uAwjtDBmp0g8s+LUrMeQuwo41BWLq3lHGUmUSnPqhyai 2+7dBXc710u5UdAT35Gvhtu9iewVeeQ3Ir+kBvoV2L2wc0aR90H4Q0e/nIrDTaR7 g4OMlLz0ez0= =yzAx -----END PGP SIGNATURE----- Wed Feb 26 06:37:10 UTC 2025 I: Checking whether the package is not for us Wed Feb 26 06:37:10 UTC 2025 I: Starting 1st build on remote node ionos12-i386.debian.net. Wed Feb 26 06:37:10 UTC 2025 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Wed Feb 26 06:42:10 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 25 18:37:11 -12 2025 I: pbuilder-time-stamp: 1740551831 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [mrbayes_3.2.7a-7.dsc] I: copying [./mrbayes_3.2.7a.orig.tar.gz] I: copying [./mrbayes_3.2.7a-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mrbayes_3.2.7a-7.dsc: unsupported subcommand dpkg-source: info: extracting mrbayes in mrbayes-3.2.7a dpkg-source: info: unpacking mrbayes_3.2.7a.orig.tar.gz dpkg-source: info: unpacking mrbayes_3.2.7a-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_rpath.patch dpkg-source: info: applying autoreconf.patch dpkg-source: info: applying no_baseline_violation.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7903/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9a7f61fa1ecf4aa98c816ab707c0bd29' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7903' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pdioVFQz/pbuilderrc_usG8 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pdioVFQz/b1 --logfile b1/build.log mrbayes_3.2.7a-7.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7903/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libreadline-dev, mpi-default-dev, libhmsbeagle-dev, autoconf-archive, pkg-config dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19786 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libreadline-dev; however: Package libreadline-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libhmsbeagle-dev; however: Package libhmsbeagle-dev is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} groff-base{a} hwloc-nox{a} intltool-debian{a} libarchive-zip-perl{a} libclang-common-19-dev{a} libclang-cpp19{a} libclc-19{a} libclc-19-dev{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libhmsbeagle-dev{a} libhmsbeagle1v5{a} libhwloc-dev{a} libhwloc15{a} libicu72{a} libllvm19{a} libllvmspirvlib19.1{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmpich-dev{a} libmpich12{a} libncurses-dev{a} libncurses6{a} libnuma-dev{a} libnuma1{a} libpipeline1{a} libpkgconf3{a} libreadline-dev{a} libreadline8t64{a} libslurm42t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libz3-4{a} m4{a} man-db{a} mesa-opencl-icd{a} mpi-default-dev{a} mpich{a} ocl-icd-libopencl1{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libclang-rt-19-dev libgpm2 libhwloc-plugins libmail-sendmail-perl lynx wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 137 MB of archives. After unpacking 665 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 autoconf-archive all 20220903-3 [775 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-4 [96.4 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-16 [735 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libgfortran-14-dev i386 14.2.0-16 [800 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 gfortran-14-i686-linux-gnu i386 14.2.0-16 [12.5 MB] Get: 36 http://deb.debian.org/debian trixie/main i386 gfortran-14 i386 14.2.0-16 [13.6 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libhwloc15 i386 2.12.0-1 [177 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 hwloc-nox i386 2.12.0-1 [232 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libclang-common-19-dev i386 1:19.1.7-1+b1 [738 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libedit2 i386 3.1-20250104-1 [98.1 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libz3-4 i386 4.13.3-1 [9211 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libllvm19 i386 1:19.1.7-1+b1 [30.4 MB] Get: 44 http://deb.debian.org/debian trixie/main i386 libclang-cpp19 i386 1:19.1.7-1+b1 [15.5 MB] Get: 45 http://deb.debian.org/debian trixie/main i386 libclc-19-dev all 1:19.1.7-1 [65.7 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libclc-19 all 1:19.1.7-1 [12.1 MB] Get: 47 http://deb.debian.org/debian trixie/main i386 libdrm-common all 2.4.123-1 [8084 B] Get: 48 http://deb.debian.org/debian trixie/main i386 libdrm2 i386 2.4.123-1 [41.8 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libdrm-amdgpu1 i386 2.4.123-1 [25.0 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libdrm-radeon1 i386 2.4.123-1 [23.0 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 ocl-icd-libopencl1 i386 2.3.2-1+b2 [43.6 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libllvmspirvlib19.1 i386 19.1.3-1 [970 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 mesa-opencl-icd i386 24.3.4-3 [24.0 MB] Get: 55 http://deb.debian.org/debian trixie/main i386 libhmsbeagle1v5 i386 4.0.1+dfsg-3 [125 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libhmsbeagle-dev i386 4.0.1+dfsg-3 [17.6 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libnuma1 i386 2.0.18-1+b1 [23.9 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libnuma-dev i386 2.0.18-1+b1 [38.8 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libltdl7 i386 2.5.4-3 [417 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libltdl-dev i386 2.5.4-3 [169 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libhwloc-dev i386 2.12.0-1 [273 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libmpich12 i386 4.2.1-5 [1519 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libslurm42t64 i386 24.11.0-2 [754 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 mpich i386 4.2.1-5 [236 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libmpich-dev i386 4.2.1-5 [2503 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libncurses6 i386 6.5+20250216-1 [112 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libncurses-dev i386 6.5+20250216-1 [384 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libreadline-dev i386 8.2-6 [166 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 mpi-default-dev i386 1.18 [3372 B] Get: 72 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 pkg-config i386 1.8.1-4 [14.0 kB] Fetched 137 MB in 2s (56.7 MB/s) Preconfiguring packages ... Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19786 files and directories currently installed.) Preparing to unpack .../00-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Preparing to unpack .../68-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libreadline-dev:i386. Preparing to unpack .../69-libreadline-dev_8.2-6_i386.deb ... Unpacking libreadline-dev:i386 (8.2-6) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../70-mpi-default-dev_1.18_i386.deb ... Unpacking mpi-default-dev (1.18) ... 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Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libdrm2:i386 (2.4.123-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhwloc-dev:i386 (2.12.0-1) ... Setting up gfortran-14 (14.2.0-16) ... Setting up libclang-cpp19 (1:19.1.7-1+b1) ... Setting up libdrm-amdgpu1:i386 (2.4.123-1) ... Setting up libdrm-radeon1:i386 (2.4.123-1) ... Setting up mpich (4.2.1-5) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libreadline-dev:i386 (8.2-6) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libmpich-dev:i386 (4.2.1-5) ... update-alternatives: using /usr/include/i386-linux-gnu/mpich to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up mpi-default-dev (1.18) ... Setting up mesa-opencl-icd:i386 (24.3.4-3) ... Setting up libhmsbeagle1v5:i386 (4.0.1+dfsg-3) ... Setting up debhelper (13.24.1) ... Setting up libhmsbeagle-dev (4.0.1+dfsg-3) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mrbayes-3.2.7a/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mrbayes_3.2.7a-7_source.changes dpkg-buildpackage: info: source package mrbayes dpkg-buildpackage: info: source version 3.2.7a-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=yes --enable-debug=yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for pdflatex... no checking for bibtex... no configure: WARNING: pdflatex or bibtex is missing, documentation will not be rebuilt checking whether make supports the include directive... yes (GNU style) checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... unsupported checking for gcc option to enable C99 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for sqrt in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes configure: Trying to locate Beagle (hmsbeagle-1) in '/usr' checking for libhmsbeagle/beagle.h... yes checking for beagleCreateInstance in -lhmsbeagle... yes configure: Found Beagle in '/usr' checking for beagleSetCPUThreadCount in -lhmsbeagle... yes configure: Using BEAGLE_CFLAGS="-I/usr/include/libhmsbeagle-1 -pthread" configure: Using BEAGLE_LIBS="-L/usr/lib -lhmsbeagle" checking for a readline compatible library... -lreadline checking for readline.h... no checking for readline/readline.h... yes checking whether readline supports history... yes checking for history.h... no checking for readline/history.h... yes checking for float.h... yes checking for limits.h... yes checking for memory.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for size_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 14.2.0 checking CFLAGS for most reasonable warnings... -Wall checking for floor... yes checking for memset... yes checking for pow... yes checking for sqrt... yes checking for strchr... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/manual/Makefile config.status: creating doc/tutorial/Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' # build mb-mpi (from initial config) LIBS="-Wl,--as-needed" dh_auto_build make -j11 make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' Making all in src make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/src' make all-am make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-bayes.o `test -f 'bayes.c' || echo './'`bayes.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-best.o `test -f 'best.c' || echo './'`best.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-command.o `test -f 'command.c' || echo './'`command.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-likelihood.o `test -f 'likelihood.c' || echo './'`likelihood.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-mbbeagle.o `test -f 'mbbeagle.c' || echo './'`mbbeagle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-mcmc.o `test -f 'mcmc.c' || echo './'`mcmc.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-model.o `test -f 'model.c' || echo './'`model.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-proposal.o `test -f 'proposal.c' || echo './'`proposal.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-sumpt.o `test -f 'sumpt.c' || echo './'`sumpt.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-utils.o `test -f 'utils.c' || echo './'`utils.c In file included from bayes.h:63, from command.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from mcmc.c:45: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from bayes.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from mbbeagle.c:32: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from proposal.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from sumpt.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from model.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from likelihood.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from utils.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from best.c:18: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from /usr/include/string.h:548, from /usr/include/memory.h:29, from bayes.h:31: In function 'strncpy', inlined from 'CopyResults' at utils.c:311:9: /usr/include/i386-linux-gnu/bits/string_fortified.h:100:10: warning: '__builtin_strncpy' accessing 11 or more bytes at offsets [-1073741824, 1073741823] and 0 may overlap up to 1073741824 bytes at offset [0, 1073741823] [-Wrestrict] 100 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'CopyProcessSsFile' at utils.c:350:9: /usr/include/i386-linux-gnu/bits/string_fortified.h:100:10: warning: '__builtin_strncpy' accessing 11 or more bytes at offsets [-1073741824, 1073741823] and 0 may overlap up to 1073741824 bytes at offset [0, 1073741823] [-Wrestrict] 100 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'CopyTreeResults' at utils.c:422:9: /usr/include/i386-linux-gnu/bits/string_fortified.h:100:10: warning: '__builtin_strncpy' accessing 11 or more bytes at offsets [-1073741824, 1073741823] and 0 may overlap up to 1073741824 bytes at offset [0, 1073741823] [-Wrestrict] 100 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSump': sumpt.c:335:5: warning: '__builtin_strncpy' output may be truncated copying 90 bytes from a string of length 119 [-Wstringop-truncation] 335 | strncpy (temp, sumpParams.sumpOutfile, 90); | ^ sumpt.c: In function 'DoCompRefTree': sumpt.c:4612:40: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 7 and 126 [-Wformat-overflow=] 4612 | sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1); | ^~ sumpt.c:4612:33: note: directive argument in the range [1, 2147483647] 4612 | sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1); | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from bayes.h:32: In function 'sprintf', inlined from 'DoCompRefTree' at sumpt.c:4612:13: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 8 and 136 bytes into a destination of size 130 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'sprintf', inlined from 'ShowConTree' at sumpt.c:8173:21: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin_sprintf' argument 3 may overlap destination object 'printLine' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSumt': sumpt.c:4958:39: warning: '.run' directive writing 4 bytes into a region of size between 1 and 120 [-Wformat-overflow=] 4958 | sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); | ^~~~ sumpt.c:4958:36: note: directive argument in the range [-2147483647, 2147483647] 4958 | sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); | ^~~~~~~~~~~~ In function 'sprintf', inlined from 'DoSumt' at sumpt.c:4958:17: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 8 and 137 bytes into a destination of size 120 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSumt': sumpt.c:4956:39: warning: '.t' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=] 4956 | sprintf (tempName, "%s.t", fileName); | ^~ In function 'sprintf', inlined from 'DoSumt' at sumpt.c:4956:17: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 3 and 122 bytes into a destination of size 120 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mcmc.c: In function 'ReopenMBPrintFiles': mcmc.c:15467:50: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 2 and 110 [-Wformat-overflow=] 15467 | sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); | ^~ mcmc.c:15467:36: note: directive argument in the range [1, 2147483647] 15467 | sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from bayes.h:32: In function 'sprintf', inlined from 'ReopenMBPrintFiles' at mcmc.c:15467:17: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 14 and 131 bytes into a destination of size 120 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ command.c: In function 'DoExecute': command.c:3560:5: warning: '__builtin_strncpy' output may be truncated copying 98 bytes from a string of length 99 [-Wstringop-truncation] 3560 | strncpy (exeFileName, inputFileName, 98); | ^ mcmc.c: In function 'RunChain': mcmc.c:17362:46: warning: '.ss' directive writing 3 bytes into a region of size between 1 and 220 [-Wformat-overflow=] 17362 | sprintf (bkupFileName,"%s.ss%d", ckpFileName,chainParams.numStepsSS-stepIndexSS); | ^~~ In function 'sprintf', inlined from 'RunChain' at mcmc.c:17362:21: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 5 and 234 bytes into a destination of size 220 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ model.c: In function 'SetModelParams': model.c:19111:48: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 19111 | sprintf (tempMult, "g_m{%d}", i+1); | ^ In file included from /usr/include/stdio.h:970, from bayes.h:32: In function 'sprintf', inlined from 'SetModelParams' at model.c:19111:21: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 16 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mb mb-bayes.o mb-best.o mb-command.o mb-likelihood.o mb-mbbeagle.o mb-mcmc.o mb-model.o mb-proposal.o mb-sumpt.o mb-utils.o -L/usr/lib -lhmsbeagle -lm -lreadline make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/src' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/src' Making all in doc make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' Making all in manual make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' Making all in tutorial make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' Making all in examples make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' mv src/mb ./mb-mpi # Now - build mb ( cd src ; make clean ) make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/src' rm -f mb rm -f *.o make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/src' dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=no --enable-debug=yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for pdflatex... no checking for bibtex... no configure: WARNING: pdflatex or bibtex is missing, documentation will not be rebuilt checking whether make supports the include directive... yes (GNU style) checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... unsupported checking for gcc option to enable C99 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for sqrt in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes configure: Trying to locate Beagle (hmsbeagle-1) in '/usr' checking for libhmsbeagle/beagle.h... yes checking for beagleCreateInstance in -lhmsbeagle... yes configure: Found Beagle in '/usr' checking for beagleSetCPUThreadCount in -lhmsbeagle... yes configure: Using BEAGLE_CFLAGS="-I/usr/include/libhmsbeagle-1 -pthread" configure: Using BEAGLE_LIBS="-L/usr/lib -lhmsbeagle" checking for a readline compatible library... -lreadline checking for readline.h... no checking for readline/readline.h... yes checking whether readline supports history... yes checking for history.h... no checking for readline/history.h... yes checking for float.h... yes checking for limits.h... yes checking for memory.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for size_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 14.2.0 checking CFLAGS for most reasonable warnings... -Wall checking for floor... yes checking for memset... yes checking for pow... yes checking for sqrt... yes checking for strchr... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/manual/Makefile config.status: creating doc/tutorial/Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating src/config.h config.status: src/config.h is unchanged config.status: executing depfiles commands LIBS="-Wl,--as-needed" dh_auto_build make -j11 make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' Making all in src make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/src' make all-am make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-bayes.o `test -f 'bayes.c' || echo './'`bayes.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-best.o `test -f 'best.c' || echo './'`best.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-command.o `test -f 'command.c' || echo './'`command.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-likelihood.o `test -f 'likelihood.c' || echo './'`likelihood.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-mbbeagle.o `test -f 'mbbeagle.c' || echo './'`mbbeagle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-mcmc.o `test -f 'mcmc.c' || echo './'`mcmc.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-model.o `test -f 'model.c' || echo './'`model.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-proposal.o `test -f 'proposal.c' || echo './'`proposal.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-sumpt.o `test -f 'sumpt.c' || echo './'`sumpt.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mb-utils.o `test -f 'utils.c' || echo './'`utils.c In file included from bayes.h:63, from command.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from mcmc.c:45: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from likelihood.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from model.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from sumpt.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from mbbeagle.c:32: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from bayes.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from best.c:18: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from proposal.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ In file included from bayes.h:63, from utils.c:38: /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h:176:45: warning: enumerator value for 'BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO' is not an integer constant expression [-Wpedantic] 176 | BEAGLE_FLAG_PREORDER_TRANSPOSE_AUTO = 1 << 31 /**< Automatically transpose pre-order transition matrices */ | ^ sumpt.c: In function 'DoSump': sumpt.c:335:5: warning: '__builtin_strncpy' output may be truncated copying 90 bytes from a string of length 119 [-Wstringop-truncation] 335 | strncpy (temp, sumpParams.sumpOutfile, 90); | ^ In file included from /usr/include/string.h:548, from /usr/include/memory.h:29, from bayes.h:31: In function 'strncpy', inlined from 'CopyResults' at utils.c:311:9: /usr/include/i386-linux-gnu/bits/string_fortified.h:100:10: warning: '__builtin_strncpy' accessing 11 or more bytes at offsets [-1073741824, 1073741823] and 0 may overlap up to 1073741824 bytes at offset [0, 1073741823] [-Wrestrict] 100 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'CopyProcessSsFile' at utils.c:350:9: /usr/include/i386-linux-gnu/bits/string_fortified.h:100:10: warning: '__builtin_strncpy' accessing 11 or more bytes at offsets [-1073741824, 1073741823] and 0 may overlap up to 1073741824 bytes at offset [0, 1073741823] [-Wrestrict] 100 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'CopyTreeResults' at utils.c:422:9: /usr/include/i386-linux-gnu/bits/string_fortified.h:100:10: warning: '__builtin_strncpy' accessing 11 or more bytes at offsets [-1073741824, 1073741823] and 0 may overlap up to 1073741824 bytes at offset [0, 1073741823] [-Wrestrict] 100 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoCompRefTree': sumpt.c:4612:40: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 7 and 126 [-Wformat-overflow=] 4612 | sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1); | ^~ sumpt.c:4612:33: note: directive argument in the range [1, 2147483647] 4612 | sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1); | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from bayes.h:32: In function 'sprintf', inlined from 'DoCompRefTree' at sumpt.c:4612:13: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 8 and 136 bytes into a destination of size 130 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'sprintf', inlined from 'ShowConTree' at sumpt.c:8173:21: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin_sprintf' argument 3 may overlap destination object 'printLine' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSumt': sumpt.c:4958:39: warning: '.run' directive writing 4 bytes into a region of size between 1 and 120 [-Wformat-overflow=] 4958 | sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); | ^~~~ sumpt.c:4958:36: note: directive argument in the range [-2147483647, 2147483647] 4958 | sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); | ^~~~~~~~~~~~ In function 'sprintf', inlined from 'DoSumt' at sumpt.c:4958:17: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 8 and 137 bytes into a destination of size 120 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSumt': sumpt.c:4956:39: warning: '.t' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=] 4956 | sprintf (tempName, "%s.t", fileName); | ^~ In function 'sprintf', inlined from 'DoSumt' at sumpt.c:4956:17: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 3 and 122 bytes into a destination of size 120 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mcmc.c: In function 'ReopenMBPrintFiles': mcmc.c:15467:50: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 2 and 110 [-Wformat-overflow=] 15467 | sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); | ^~ mcmc.c:15467:36: note: directive argument in the range [1, 2147483647] 15467 | sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from bayes.h:32: In function 'sprintf', inlined from 'ReopenMBPrintFiles' at mcmc.c:15467:17: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 14 and 131 bytes into a destination of size 120 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ command.c: In function 'DoExecute': command.c:3560:5: warning: '__builtin_strncpy' output may be truncated copying 98 bytes from a string of length 99 [-Wstringop-truncation] 3560 | strncpy (exeFileName, inputFileName, 98); | ^ mcmc.c: In function 'RunChain': mcmc.c:17362:46: warning: '.ss' directive writing 3 bytes into a region of size between 1 and 220 [-Wformat-overflow=] 17362 | sprintf (bkupFileName,"%s.ss%d", ckpFileName,chainParams.numStepsSS-stepIndexSS); | ^~~ In function 'sprintf', inlined from 'RunChain' at mcmc.c:17362:21: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 5 and 234 bytes into a destination of size 220 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ model.c: In function 'SetModelParams': model.c:19111:48: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 19111 | sprintf (tempMult, "g_m{%d}", i+1); | ^ In file included from /usr/include/stdio.h:970, from bayes.h:32: In function 'sprintf', inlined from 'SetModelParams' at model.c:19111:21: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 16 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mb mb-bayes.o mb-best.o mb-command.o mb-likelihood.o mb-mbbeagle.o mb-mcmc.o mb-model.o mb-proposal.o mb-sumpt.o mb-utils.o -L/usr/lib -lhmsbeagle -lm -lreadline make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/src' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/src' Making all in doc make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' Making all in manual make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' Making all in tutorial make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' Making all in examples make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' mv src/mb . make[1]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' dh_auto_test make -j11 check "TESTSUITEFLAGS=-j11 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' Making check in src make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/src' gcc -I/usr/include/libhmsbeagle-1 -pthread -Wall -g -std=c99 -pedantic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mrbayes-3.2.7a=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mb mb-bayes.o mb-best.o mb-command.o mb-likelihood.o mb-mbbeagle.o mb-mcmc.o mb-model.o mb-proposal.o mb-sumpt.o mb-utils.o -L/usr/lib -lhmsbeagle -lm -lreadline make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/src' Making check in doc make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' Making check in manual make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' Making check in tutorial make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' Making check in examples make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' make[1]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j11 install DESTDIR=/build/reproducible-path/mrbayes-3.2.7a/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' Making install in src make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/src' make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/bin' /usr/bin/install -c mb '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/src' make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/src' Making install in doc make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' Making install in manual make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/doc/mrbayes' /usr/bin/install -c -m 644 Manual_MrBayes_v3.2.pdf '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/doc/mrbayes' make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/manual' Making install in tutorial make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/doc/mrbayes' /usr/bin/mkdir -p '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/doc/mrbayes' /usr/bin/install -c -m 644 hym.nex '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/doc/mrbayes' /usr/bin/install -c -m 644 MBDating.pdf '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/doc/mrbayes' make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc/tutorial' make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[4]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/doc' Making install in examples make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/examples/mrbayes' /usr/bin/install -c -m 644 avian_ovomucoids.nex codon.nex cynmix.nex finch.nex hymfossil.nex primates.nex replicase.nex sceloporus.nex '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/examples/mrbayes' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a/examples' make[2]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' make[3]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/doc/mrbayes' /usr/bin/install -c -m 644 COPYING README NEWS '/build/reproducible-path/mrbayes-3.2.7a/debian/tmp/usr/share/doc/mrbayes' make[3]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' make[2]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' make[1]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' dh_installexamples find debian -name "Makefile*" -delete make[1]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' dh_missing --list-missing dh_missing: warning: usr/bin/mb exists in debian/tmp but is not installed to anywhere (related file: "mb") dh_missing: warning: usr/share/doc/mrbayes/COPYING exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/mrbayes/MBDating.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/mrbayes/Manual_MrBayes_v3.2.pdf exists in debian/tmp but is not installed to anywhere (related file: "doc/manual/Manual_MrBayes_v3.2.pdf") dh_missing: warning: usr/share/doc/mrbayes/NEWS exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/mrbayes/README exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/mrbayes/hym.nex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/examples/mrbayes/avian_ovomucoids.nex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/examples/mrbayes/codon.nex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/examples/mrbayes/cynmix.nex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/examples/mrbayes/finch.nex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/examples/mrbayes/hymfossil.nex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/examples/mrbayes/primates.nex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/examples/mrbayes/replicase.nex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/examples/mrbayes/sceloporus.nex exists in debian/tmp but is not installed to anywhere While detecting missing files, dh_missing noted some files with a similar name to those that were missing. This warning /might/ be resolved by replacing references to the missing files with the similarly named ones that dh_missing found - assuming the content is identical. As an example, you might want to replace: * mb with: * usr/bin/mb in a file in debian/ or as argument to one of the dh_* tools called from debian/rules. (Note it is possible the paths are not used verbatim but instead directories containing or globs matching them are used instead) Alternatively, add the missing file to debian/not-installed if it cannot and should not be used. The following debhelper tools have reported what they installed (with files per package) * dh_install: mrbayes (1), mrbayes-doc (1), mrbayes-mpi (2) * dh_installdocs: mrbayes (3), mrbayes-doc (0), mrbayes-mpi (0) * dh_installexamples: mrbayes (0), mrbayes-doc (0), mrbayes-mpi (0) * dh_installman: mrbayes (1), mrbayes-doc (0), mrbayes-mpi (1) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.md.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libreadline8t64 from: /lib/i386-linux-gnu/libreadline.so.8 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libreadline8t64 to: /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libreadline8t64 from: /lib/i386-linux-gnu/libreadline.so.8 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libreadline8t64 to: /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged debian/rules override_dh_installdeb make[1]: Entering directory '/build/reproducible-path/mrbayes-3.2.7a' # FIXME: That's a dirty hack by simply removing debug information in mrbayes-mpi-dbgsym # Due to the duplicated build above this is just a duplicate of mrbayes-dbgsym and creates a file conflict if [ -d debian/.debhelper/mrbayes-mpi/dbgsym-root/usr/lib/debug ] ; then \ find debian/.debhelper/mrbayes-mpi/dbgsym-root/usr/lib/debug -name "*.debug" -delete ; \ fi dh_installdeb make[1]: Leaving directory '/build/reproducible-path/mrbayes-3.2.7a' dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mrbayes-dbgsym' in '../mrbayes-dbgsym_3.2.7a-7_i386.deb'. dpkg-deb: building package 'mrbayes-doc' in '../mrbayes-doc_3.2.7a-7_all.deb'. dpkg-deb: building package 'mrbayes-mpi' in '../mrbayes-mpi_3.2.7a-7_i386.deb'. dpkg-deb: building package 'mrbayes' in '../mrbayes_3.2.7a-7_i386.deb'. dpkg-deb: building package 'mrbayes-mpi-dbgsym' in '../mrbayes-mpi-dbgsym_3.2.7a-7_i386.deb'. dpkg-genbuildinfo --build=binary -O../mrbayes_3.2.7a-7_i386.buildinfo dpkg-genchanges --build=binary -O../mrbayes_3.2.7a-7_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7903 and its subdirectories I: Current time: Tue Feb 25 18:42:09 -12 2025 I: pbuilder-time-stamp: 1740552129 Wed Feb 26 06:42:11 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Wed Feb 26 06:42:11 UTC 2025 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Wed Feb 26 06:44:20 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net. Wed Feb 26 06:44:21 UTC 2025 I: mrbayes_3.2.7a-7_i386.changes: Format: 1.8 Date: Sun, 14 Jan 2024 14:35:17 +0100 Source: mrbayes Binary: mrbayes mrbayes-dbgsym mrbayes-doc mrbayes-mpi mrbayes-mpi-dbgsym Architecture: i386 all Version: 3.2.7a-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mrbayes - Bayesian Inference of Phylogeny mrbayes-doc - Bayesian Inference of Phylogeny - manual mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version Closes: 1045400 1049739 Changes: mrbayes (3.2.7a-7) unstable; urgency=medium . * Fix clean target Closes: #1045400, #1049739 * Standards-Version: 4.6.2 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) Checksums-Sha1: 30fb2595eb8528128ed574f53f4fd400112683e4 914408 mrbayes-dbgsym_3.2.7a-7_i386.deb 40070e1dee394b744ab432d75df7504da4ef3c58 1329088 mrbayes-doc_3.2.7a-7_all.deb 9ea24d86066c723f36be5a4f810b1ea047cb4b34 968 mrbayes-mpi-dbgsym_3.2.7a-7_i386.deb c4dd0264f3a2c010082f6bf5dec72bb38c7c0445 628076 mrbayes-mpi_3.2.7a-7_i386.deb 57295c069fb71a15fb5de56bdf14fe8fd15af06a 6972 mrbayes_3.2.7a-7_i386.buildinfo f217436a12bbcf9d98738bbaf85918269614f819 691108 mrbayes_3.2.7a-7_i386.deb Checksums-Sha256: 19582964d00c8a3f8f00aecef7f3b04dad1e7b98e9a87d365a74af61d6d71c18 914408 mrbayes-dbgsym_3.2.7a-7_i386.deb d517b4918e8e90f7d3d104fc315af1fd0da30aa7b8d47f04c8be55db0df1ac4b 1329088 mrbayes-doc_3.2.7a-7_all.deb 6e4e95c9cba3594dd9c5283ad53435dbad8e4656f222e6a21f58947031d5198b 968 mrbayes-mpi-dbgsym_3.2.7a-7_i386.deb a25d43db27e3f23e7fbf1591370d3e64951a2f3216b11c205f9ca32c5d5610b3 628076 mrbayes-mpi_3.2.7a-7_i386.deb 39572c5be37d907c77deaa89c6c4f58c34ccfea07f1384ef0ab9fd767533d35c 6972 mrbayes_3.2.7a-7_i386.buildinfo 218aa53f8eeeb98f262fb5e4d1fe7989ccc40d2461ec3a68ba58b7fdf3ed9758 691108 mrbayes_3.2.7a-7_i386.deb Files: c770d2790045ab16435c9a683019d1af 914408 debug optional mrbayes-dbgsym_3.2.7a-7_i386.deb 40ef7277af5465fba89ea91467cd0a4a 1329088 doc optional mrbayes-doc_3.2.7a-7_all.deb 2d7158d982498d182d09351fc9a7e0f4 968 debug optional mrbayes-mpi-dbgsym_3.2.7a-7_i386.deb a19e9cd3f43bee323f51daa67769230c 628076 science optional mrbayes-mpi_3.2.7a-7_i386.deb b2fbe6dbf45586d1b066fa85a30df15f 6972 science optional mrbayes_3.2.7a-7_i386.buildinfo 569e2cecdc045485416f5c3e8353f800 691108 science optional mrbayes_3.2.7a-7_i386.deb Wed Feb 26 06:44:22 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_7-58905.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.pdioVFQz/mrbayes_3.2.7a-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.pdioVFQz/mrbayes_3.2.7a-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.pdioVFQz/mrbayes_3.2.7a-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.pdioVFQz/b1/mrbayes_3.2.7a-7_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.pdioVFQz/b2/mrbayes_3.2.7a-7_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 244ms CPU time consumed: 246ms Wed Feb 26 06:44:22 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Wed Feb 26 06:44:22 UTC 2025 I: mrbayes from trixie built successfully and reproducibly on i386. Wed Feb 26 06:44:23 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Feb 26 06:44:23 UTC 2025 I: Submitting 8.0K b1/mrbayes_3.2.7a-7_i386.buildinfo.asc Wed Feb 26 06:44:47 UTC 2025 I: Submitting 8.0K b2/mrbayes_3.2.7a-7_i386.buildinfo.asc Wed Feb 26 06:45:05 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Feb 26 06:45:05 UTC 2025 I: Done submitting .buildinfo files. Wed Feb 26 06:45:05 UTC 2025 I: Removing signed mrbayes_3.2.7a-7_i386.buildinfo.asc files: removed './b1/mrbayes_3.2.7a-7_i386.buildinfo.asc' removed './b2/mrbayes_3.2.7a-7_i386.buildinfo.asc'