Fri Mar 14 05:14:31 UTC 2025 I: starting to build opentsne/trixie/i386 on jenkins on '2025-03-14 05:14' Fri Mar 14 05:14:31 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/46853/console.log Fri Mar 14 05:14:31 UTC 2025 I: Downloading source for trixie/opentsne=1.0.2-2 --2025-03-14 05:14:31-- http://deb.debian.org/debian/pool/main/o/opentsne/opentsne_1.0.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2323 (2.3K) [text/prs.lines.tag] Saving to: ‘opentsne_1.0.2-2.dsc’ 0K .. 100% 362M=0s 2025-03-14 05:14:31 (362 MB/s) - ‘opentsne_1.0.2-2.dsc’ saved [2323/2323] Fri Mar 14 05:14:31 UTC 2025 I: opentsne_1.0.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: opentsne Binary: python3-opentsne Architecture: any Version: 1.0.2-2 Maintainer: Debian PaN Maintainers Uploaders: Debian Science Maintainers , Picca Frédéric-Emmanuel , Roland Mas , Homepage: https://github.com/pavlin-policar/openTSNE Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/opentsne Vcs-Git: https://salsa.debian.org/science-team/opentsne.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn Package-List: python3-opentsne deb python optional arch=any Checksums-Sha1: 6c3dba6ffa253e6d0666c6d2b3755cd3bdea04cf 22107860 opentsne_1.0.2.orig.tar.gz adc859b42b1048ee3063f2492a2e6ea491f4ff0d 4712 opentsne_1.0.2-2.debian.tar.xz Checksums-Sha256: 41d34d969b26649a1f3a3778a1b874b690bfbe71536c0d436fe35318bf3aedae 22107860 opentsne_1.0.2.orig.tar.gz 4850a3a075049c2500b6fbac9dc5b1b86a09242a197758ce6c4c790485f3dc78 4712 opentsne_1.0.2-2.debian.tar.xz Files: f8431e0c31572599f673433506ad7eea 22107860 opentsne_1.0.2.orig.tar.gz 2be9018e5537d4743d907dbb892feacf 4712 opentsne_1.0.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEtBU2D1kett1zr/uD0w3s0lmTIvwFAmb8M/0ACgkQ0w3s0lmT Ivx5dQ/7BRoDwWGOLwbJXQTSsmXU1GAXci+VBrZ2hjkza7+gVJai/sUsTNXip8sf QDzeBc/qUl8dl/iHMbc/3n5anOgJ3304cZBKWXVPcabmQ5mAc8J/s9nYs0DL6Fs7 2jRbWKSg8t9QDK+ctNv3ot6an+3Z5KfK/0BNxnlz95QwY6Q4LAXb+SxUvmAEOcsN y4DHUvCkaoZnA3wjoDoWvs37sn48lCcomtBbXP9m8MOc0xJdakSFPhTdemaaNSDu 6bhzcjfbIf4YyC4UjkdpeDPWaAeabJZzCgcufa8cZBJjiF/TO16sxCLYuE5vnhtq z87Syh76/hP1RdkcZqQB+D+a9njexJ+ZPipF8Gmo8VsTrzK4rVMSPWdKV7zeav26 wnTpmQY14Z1xU4+RLtrqEkxElbdO1ngBM7oQPIoKWF2W3QI9+PvJl17aV4h82EOV UlYR9OJDj7sJMCLGis1+e81o+tkvj3vQWJ6iV/0IQqDeAu02AgZSSG36f+JH8vXO 2U5XLbCR51WCqRzWWPyOf+M3aDQUoLq+/91gesUpOlClOVQJfLRHxVmIf5k3P+GT P0I6jwnt3BqUpY5K7wT7HQIa++8wwaeBHL4zQCncXq27DGE0ZxfTv08sqfEOmrFx /JZXegF2Zk2zvn2pU1TPCU1zy6BpzgQHEvvX8Rdlk1tSwOyjPwE= =ZQwD -----END PGP SIGNATURE----- Fri Mar 14 05:14:31 UTC 2025 I: Checking whether the package is not for us Fri Mar 14 05:14:31 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net. Fri Mar 14 05:14:31 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Fri Mar 14 05:18:07 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 15 23:37:32 -12 2026 I: pbuilder-time-stamp: 1776339452 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [opentsne_1.0.2-2.dsc] I: copying [./opentsne_1.0.2.orig.tar.gz] I: copying [./opentsne_1.0.2-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-2.dsc: unsupported subcommand dpkg-source: info: extracting opentsne in opentsne-1.0.2 dpkg-source: info: unpacking opentsne_1.0.2.orig.tar.gz dpkg-source: info: unpacking opentsne_1.0.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-one-test-on-i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/96282/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e114d1a108524d6692dffb3f72a85d90' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='96282' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.62avoeLs/pbuilderrc_g9Ka --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.62avoeLs/b1 --logfile b1/build.log opentsne_1.0.2-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/96282/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19788 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-decorator{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-runner{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx psmisc python3-matplotlib python3-pil python3-pooch python3-psutil python3-pygments wget 0 packages upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 80.3 MB of archives. After unpacking 346 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3-numpy-dev i386 1:2.2.3+ds-2+b1 [145 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-17 [735 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:2.2.3+ds-2+b1 [5060 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-7 [66.0 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-7 [876 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-7 [301 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.11+dfsg-2+b1 [2467 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-4 [539 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 44 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250308 [115 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.4-1 [165 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libfftw3-double3 i386 3.3.10-2+b1 [629 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libfftw3-long3 i386 3.3.10-2+b1 [349 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libfftw3-quad3 i386 3.3.10-2+b1 [1860 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libfftw3-single3 i386 3.3.10-2+b1 [646 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libfftw3-bin i386 3.3.10-2+b1 [50.0 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libfftw3-dev i386 3.3.10-2+b1 [3254 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b2 [29.5 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libpython3.13 i386 3.13.2-1 [2199 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libpython3.13-dev i386 3.13.2-1 [5181 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.13.2-2 [10.3 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.13.2-2 [1068 B] Get: 70 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 pybuild-plugin-pyproject all 6.20250308 [11.7 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.13.2-2 [1044 B] Get: 78 http://deb.debian.org/debian trixie/main i386 python3.13-dev i386 3.13.2-1 [505 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.13.2-2 [26.1 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.13.2-2 [1068 B] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-joblib all 1.4.2-3 [216 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.4-1 [250 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 98 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.14.1-4+b1 [17.0 MB] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-sklearn-lib i386 1.4.2+dfsg-7+b3 [3553 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-sklearn all 1.4.2+dfsg-7 [2248 kB] Fetched 80.3 MB in 1s (92.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19788 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_i386.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/opentsne-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../opentsne_1.0.2-2_source.changes dpkg-buildpackage: info: source package opentsne dpkg-buildpackage: info: source version 1.0.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Roland Mas dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/opentsne-1.0.2' # remove the cython generated file to force rebuild rm -f openTSNE/_tsne.cpp openTSNE/kl_divergence.cpp openTSNE/quad_tree.cpp openTSNE/_matrix_mul/matrix_mul_fftw3.cpp openTSNE/_matrix_mul/matrix_mul_numpy.cpp make[1]: Leaving directory '/build/reproducible-path/opentsne-1.0.2' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.13_opentsne * Building wheel... FFTW3 header files found. Using FFTW implementation of FFT. running bdist_wheel running build running build_py creating build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/metrics.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/callbacks.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/nearest_neighbors.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/version.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/initialization.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/affinity.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/__init__.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/sklearn.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/utils.py -> build/lib.linux-i686-cpython-313/openTSNE copying openTSNE/tsne.py -> build/lib.linux-i686-cpython-313/openTSNE creating build/lib.linux-i686-cpython-313/openTSNE/dependencies copying openTSNE/dependencies/__init__.py -> build/lib.linux-i686-cpython-313/openTSNE/dependencies creating build/lib.linux-i686-cpython-313/openTSNE/_matrix_mul copying openTSNE/_matrix_mul/__init__.py -> build/lib.linux-i686-cpython-313/openTSNE/_matrix_mul creating build/lib.linux-i686-cpython-313/openTSNE/dependencies/annoy copying openTSNE/dependencies/annoy/__init__.py -> build/lib.linux-i686-cpython-313/openTSNE/dependencies/annoy running build_ext creating build/reproducible-path/opentsne-1.0.2/tmpo8iux6cz i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -c /build/reproducible-path/opentsne-1.0.2/tmpo8iux6cz/omp.c -o build/reproducible-path/opentsne-1.0.2/tmpo8iux6cz/omp.o i686-linux-gnu-gcc build/reproducible-path/opentsne-1.0.2/tmpo8iux6cz/omp.o -o /build/reproducible-path/opentsne-1.0.2/tmpo8iux6cz/omp.c performance hint: openTSNE/quad_tree.pyx:73:5: Exception check on 'update_center_of_mass' will always require the GIL to be acquired. Possible solutions: 1. Declare 'update_center_of_mass' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'update_center_of_mass' to allow an error code to be returned. performance hint: openTSNE/quad_tree.pxd:21:18: No exception value declared for 'is_close' in pxd file. Users cimporting this function and calling it without the gil will always require an exception check. Suggest adding an explicit exception value. warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' Found openmp. Compiling with openmp flags... Compiling openTSNE/quad_tree.pyx because it changed. [1/1] Cythonizing openTSNE/quad_tree.pyx building 'openTSNE.quad_tree' extension creating build/temp.linux-i686-cpython-313/openTSNE i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c openTSNE/quad_tree.cpp -o build/temp.linux-i686-cpython-313/openTSNE/quad_tree.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from openTSNE/quad_tree.cpp:1279: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/openTSNE/quad_tree.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-313/openTSNE/quad_tree.cpython-313-i386-linux-gnu.so -fopenmp warning: openTSNE/_tsne.pyx:9:7: implicit declaration of 'np' performance hint: openTSNE/_tsne.pyx:225:5: Exception check on '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dest_sig' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dtype' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg_base' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_series' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'last_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_matches' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_candidates' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dst_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_matches' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_candidates' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sn' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'type_match' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'candidates' warning: openTSNE/_tsne.pyx:540:8: implicit declaration of 'coord_max' warning: openTSNE/_tsne.pyx:542:8: implicit declaration of 'coord_min' performance hint: openTSNE/_tsne.pyx:207:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. performance hint: openTSNE/_tsne.pyx:234:56: Exception check after calling 'is_close' will always require the GIL to be acquired. Possible solutions: 1. Declare 'is_close' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Declare any exception value explicitly for functions in pxd files. performance hint: openTSNE/_tsne.pyx:275:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. Compiling openTSNE/_tsne.pyx because it changed. [1/1] Cythonizing openTSNE/_tsne.pyx building 'openTSNE._tsne' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c openTSNE/_tsne.cpp -o build/temp.linux-i686-cpython-313/openTSNE/_tsne.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from openTSNE/_tsne.cpp:1279: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/openTSNE/_tsne.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-313/openTSNE/_tsne.cpython-313-i386-linux-gnu.so -fopenmp warning: openTSNE/kl_divergence.pyx:9:7: implicit declaration of 'np' warning: openTSNE/kl_divergence.pyx:17:19: implicit declaration of 'estimate_positive_gradient_nn' Compiling openTSNE/kl_divergence.pyx because it changed. [1/1] Cythonizing openTSNE/kl_divergence.pyx building 'openTSNE.kl_divergence' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c openTSNE/kl_divergence.cpp -o build/temp.linux-i686-cpython-313/openTSNE/kl_divergence.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from openTSNE/kl_divergence.cpp:1279: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/openTSNE/kl_divergence.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-313/openTSNE/kl_divergence.cpython-313-i386-linux-gnu.so -fopenmp building 'openTSNE.dependencies.annoy.annoylib' extension creating build/temp.linux-i686-cpython-313/openTSNE/dependencies/annoy i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c openTSNE/dependencies/annoy/annoymodule.cc -o build/temp.linux-i686-cpython-313/openTSNE/dependencies/annoy/annoymodule.o -std=c++14 -DANNOYLIB_MULTITHREADED_BUILD -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp openTSNE/dependencies/annoy/annoymodule.cc: In function 'bool convert_list_to_vector(PyObject*, int, std::vector >*)': openTSNE/dependencies/annoy/annoymodule.cc:304:69: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Py_ssize_t' {aka 'int'} [-Wformat=] 304 | snprintf(buf, 128, "Vector has wrong length (expected %d, got %ld)", f, PyObject_Size(v)); | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int Py_ssize_t {aka int} | %d In file included from openTSNE/dependencies/annoy/annoymodule.cc:15: openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoymodule.cc:96:84: required from here 96 | bool load(const char* filename, bool prefault, char** error) { return _index.load(filename, prefault, error); }; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = long long unsigned int; D = Hamming; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoymodule.cc:92:71: required from here 92 | bool build(int q, int n_threads, char** error) { return _index.build(q, n_threads, error); }; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = DotProduct; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Manhattan; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Euclidean; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Angular; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/openTSNE/dependencies/annoy/annoymodule.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-313/openTSNE/dependencies/annoy/annoylib.cpython-313-i386-linux-gnu.so -fopenmp warning: openTSNE/_matrix_mul/matrix_mul_fftw3.pyx:9:7: implicit declaration of 'np' Compiling openTSNE/_matrix_mul/matrix_mul_fftw3.pyx because it changed. [1/1] Cythonizing openTSNE/_matrix_mul/matrix_mul_fftw3.pyx building 'openTSNE._matrix_mul.matrix_mul' extension creating build/temp.linux-i686-cpython-313/openTSNE/_matrix_mul i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c openTSNE/_matrix_mul/matrix_mul_fftw3.cpp -o build/temp.linux-i686-cpython-313/openTSNE/_matrix_mul/matrix_mul_fftw3.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from openTSNE/_matrix_mul/matrix_mul_fftw3.cpp:1282: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/openTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -lfftw3 -o build/lib.linux-i686-cpython-313/openTSNE/_matrix_mul/matrix_mul.cpython-313-i386-linux-gnu.so -fopenmp installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/metrics.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/callbacks.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/nearest_neighbors.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/version.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/initialization.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/_tsne.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/affinity.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/__init__.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/sklearn.py -> build/bdist.linux-i686/wheel/./openTSNE creating build/bdist.linux-i686/wheel/openTSNE/dependencies creating build/bdist.linux-i686/wheel/openTSNE/dependencies/annoy copying build/lib.linux-i686-cpython-313/openTSNE/dependencies/annoy/annoylib.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-i686-cpython-313/openTSNE/dependencies/annoy/__init__.py -> build/bdist.linux-i686/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-i686-cpython-313/openTSNE/dependencies/__init__.py -> build/bdist.linux-i686/wheel/./openTSNE/dependencies copying build/lib.linux-i686-cpython-313/openTSNE/utils.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/tsne.py -> build/bdist.linux-i686/wheel/./openTSNE creating build/bdist.linux-i686/wheel/openTSNE/_matrix_mul copying build/lib.linux-i686-cpython-313/openTSNE/_matrix_mul/matrix_mul.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE/_matrix_mul copying build/lib.linux-i686-cpython-313/openTSNE/_matrix_mul/__init__.py -> build/bdist.linux-i686/wheel/./openTSNE/_matrix_mul copying build/lib.linux-i686-cpython-313/openTSNE/kl_divergence.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-313/openTSNE/quad_tree.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE running install_egg_info running egg_info creating openTSNE.egg-info writing openTSNE.egg-info/PKG-INFO writing dependency_links to openTSNE.egg-info/dependency_links.txt writing requirements to openTSNE.egg-info/requires.txt writing top-level names to openTSNE.egg-info/top_level.txt writing manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'openTSNE' adding license file 'LICENSE' writing manifest file 'openTSNE.egg-info/SOURCES.txt' Copying openTSNE.egg-info to build/bdist.linux-i686/wheel/./openTSNE-1.0.2.egg-info running install_scripts creating build/bdist.linux-i686/wheel/openTSNE-1.0.2.dist-info/WHEEL creating '/build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.13_opentsne/.tmp-38xvsk58/openTSNE-1.0.2-cp313-cp313-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'openTSNE/__init__.py' adding 'openTSNE/_tsne.cpython-313-i386-linux-gnu.so' adding 'openTSNE/affinity.py' adding 'openTSNE/callbacks.py' adding 'openTSNE/initialization.py' adding 'openTSNE/kl_divergence.cpython-313-i386-linux-gnu.so' adding 'openTSNE/metrics.py' adding 'openTSNE/nearest_neighbors.py' adding 'openTSNE/quad_tree.cpython-313-i386-linux-gnu.so' adding 'openTSNE/sklearn.py' adding 'openTSNE/tsne.py' adding 'openTSNE/utils.py' adding 'openTSNE/version.py' adding 'openTSNE/_matrix_mul/__init__.py' adding 'openTSNE/_matrix_mul/matrix_mul.cpython-313-i386-linux-gnu.so' adding 'openTSNE/dependencies/__init__.py' adding 'openTSNE/dependencies/annoy/__init__.py' adding 'openTSNE/dependencies/annoy/annoylib.cpython-313-i386-linux-gnu.so' adding 'openTSNE-1.0.2.dist-info/LICENSE' adding 'openTSNE-1.0.2.dist-info/METADATA' adding 'openTSNE-1.0.2.dist-info/WHEEL' adding 'openTSNE-1.0.2.dist-info/top_level.txt' adding 'openTSNE-1.0.2.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built openTSNE-1.0.2-cp313-cp313-linux_i686.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.13_opentsne/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.13_opentsne/build configfile: pyproject.toml plugins: typeguard-4.4.2 collected 163 items tests/test_affinities.py ......................... [ 15%] tests/test_correctness.py ......................F... [ 31%] tests/test_different_usages.py ............ [ 38%] tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%] ss [ 64%] tests/test_sklearn_wrapper.py ... [ 66%] tests/test_tsne.py ...ss............................................... [ 98%] tests/test_utils.py ... [100%] =================================== FAILURES =================================== _________ TestTSNECorrectnessUsingPrecomputedDistanceMatrix.test_iris __________ self = @unittest.skipIf(platform.machine() == 'i686' or platform.machine() == 'i386', reason="Skipping test on i386 architecture") def test_iris(self): x = datasets.load_iris().data print(platform.machine()) x += np.random.normal(0, 1e-3, x.shape) # iris contains duplicate rows distances = squareform(pdist(x)) params = dict(initialization="random", random_state=0) embedding1 = TSNE(metric="precomputed", **params).fit(distances) embedding2 = TSNE(metric="euclidean", **params).fit(x) > np.testing.assert_almost_equal(embedding1, embedding2) tests/test_correctness.py:304: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ args = (TSNEEmbedding([[ 12.33582641, 14.73842604], [ 12.11693355, 11.95891433], [ 13.1900965...45e+00], [-1.01942410e+01, -8.53228390e+00], [-6.93581780e+00, -5.99518017e+00]]), 7, '') kwargs = {}, old_name = 'y', new_name = 'desired' @functools.wraps(fun) def wrapper(*args, **kwargs): for old_name, new_name in zip(old_names, new_names): if old_name in kwargs: if dep_version: end_version = dep_version.split('.') end_version[1] = str(int(end_version[1]) + 2) end_version = '.'.join(end_version) msg = (f"Use of keyword argument `{old_name}` is " f"deprecated and replaced by `{new_name}`. " f"Support for `{old_name}` will be removed " f"in NumPy {end_version}.") warnings.warn(msg, DeprecationWarning, stacklevel=2) if new_name in kwargs: msg = (f"{fun.__name__}() got multiple values for " f"argument now known as `{new_name}`") raise TypeError(msg) kwargs[new_name] = kwargs.pop(old_name) > return fun(*args, **kwargs) E AssertionError: E Arrays are not almost equal to 7 decimals E E Mismatched elements: 300 / 300 (100%) E Max absolute difference among violations: 4.98083128 E Max relative difference among violations: 343.37801699 E ACTUAL: TSNEEmbedding([[ 12.3358264, 14.738426 ], E [ 12.1169335, 11.9589143], E [ 13.1900966, 12.4067624],... E DESIRED: TSNEEmbedding([[ 1.1261305e+01, 1.4358504e+01], E [ 1.2425017e+01, 1.1965525e+01], E [ 1.3297560e+01, 1.2726416e+01],... /usr/lib/python3/dist-packages/numpy/_utils/__init__.py:85: AssertionError ----------------------------- Captured stdout call ----------------------------- x86_64 =============================== warnings summary =============================== tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error /usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly. warnings.warn( tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.13_opentsne/build/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED tests/test_correctness.py::TestTSNECorrectnessUsingPrecomputedDistanceMatrix::test_iris ======= 1 failed, 136 passed, 26 skipped, 7 warnings in 88.57s (0:01:28) ======= E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.13_opentsne/build; python3.13 -m pytest tests dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13 make: *** [debian/rules:20: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/96282 and its subdirectories Fri Mar 14 05:18:07 UTC 2025 W: No second build log, what happened?