Tue Mar 11 04:31:18 UTC 2025 I: starting to build parallel-fastq-dump/trixie/i386 on jenkins on '2025-03-11 04:31'
Tue Mar 11 04:31:18 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/62611/console.log
Tue Mar 11 04:31:18 UTC 2025 I: Downloading source for trixie/parallel-fastq-dump=0.6.7-3
--2025-03-11 04:31:18-- http://deb.debian.org/debian/pool/main/p/parallel-fastq-dump/parallel-fastq-dump_0.6.7-3.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2141 (2.1K) [text/prs.lines.tag]
Saving to: ‘parallel-fastq-dump_0.6.7-3.dsc’
0K .. 100% 285M=0s
2025-03-11 04:31:18 (285 MB/s) - ‘parallel-fastq-dump_0.6.7-3.dsc’ saved [2141/2141]
Tue Mar 11 04:31:18 UTC 2025 I: parallel-fastq-dump_0.6.7-3.dsc
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Hash: SHA512
Format: 3.0 (quilt)
Source: parallel-fastq-dump
Binary: parallel-fastq-dump
Architecture: any
Version: 0.6.7-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/rvalieris/parallel-fastq-dump
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/parallel-fastq-dump
Vcs-Git: https://salsa.debian.org/med-team/parallel-fastq-dump.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit
Package-List:
parallel-fastq-dump deb science optional arch=any
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Tue Mar 11 04:31:18 UTC 2025 I: Checking whether the package is not for us
Tue Mar 11 04:31:18 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net.
Tue Mar 11 04:31:18 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net.
Tue Mar 11 04:31:44 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Apr 12 22:54:14 -12 2026
I: pbuilder-time-stamp: 1776077654
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [parallel-fastq-dump_0.6.7-3.dsc]
I: copying [./parallel-fastq-dump_0.6.7.orig.tar.gz]
I: copying [./parallel-fastq-dump_0.6.7-3.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./parallel-fastq-dump_0.6.7-3.dsc: unsupported subcommand
dpkg-source: info: extracting parallel-fastq-dump in parallel-fastq-dump-0.6.7
dpkg-source: info: unpacking parallel-fastq-dump_0.6.7.orig.tar.gz
dpkg-source: info: unpacking parallel-fastq-dump_0.6.7-3.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/885/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='5e6a38507a0745269e45486f38e73c13'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='885'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UtS6KA3O/pbuilderrc_6aY2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UtS6KA3O/b1 --logfile b1/build.log parallel-fastq-dump_0.6.7-3.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://213.165.73.152:3128'
I: uname -a
Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/885/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19787 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on sra-toolkit; however:
Package sra-toolkit is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded.
Need to get 28.7 MB of archives. After unpacking 110 MB will be used.
The following packages have unmet dependencies:
pbuilder-satisfydepends-dummy : Depends: sra-toolkit which is a virtual package and is not provided by any available package
Unable to resolve dependencies! Giving up...
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded.
Need to get 28.7 MB of archives. After unpacking 110 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/885 and its subdirectories
Tue Mar 11 04:31:45 UTC 2025 W: No second build log, what happened?
Tue Mar 11 04:31:45 UTC 2025 W: Downloading the build dependencies failed
Tue Mar 11 04:31:45 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case.
Tue Mar 11 04:31:45 UTC 2025 W: Network problems are automatically rescheduled after some hours.