Sat Mar 8 17:39:07 UTC 2025 I: starting to build prank/trixie/i386 on jenkins on '2025-03-08 17:38'
Sat Mar 8 17:39:07 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/55349/console.log
Sat Mar 8 17:39:07 UTC 2025 I: Downloading source for trixie/prank=0.0.170427+dfsg-3
--2025-03-08 17:39:07-- http://deb.debian.org/debian/pool/main/p/prank/prank_0.0.170427%2bdfsg-3.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2035 (2.0K) [text/prs.lines.tag]
Saving to: ‘prank_0.0.170427+dfsg-3.dsc’
0K . 100% 314M=0s
2025-03-08 17:39:07 (314 MB/s) - ‘prank_0.0.170427+dfsg-3.dsc’ saved [2035/2035]
Sat Mar 8 17:39:07 UTC 2025 I: prank_0.0.170427+dfsg-3.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: prank
Binary: prank
Architecture: any
Version: 0.0.170427+dfsg-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Manuel Prinz <manuel@debian.org>, Andreas Tille <tille@debian.org>
Homepage: http://wasabiapp.org/software/prank/
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/prank
Vcs-Git: https://salsa.debian.org/med-team/prank.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13)
Package-List:
prank deb science optional arch=any
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Files:
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Sat Mar 8 17:39:07 UTC 2025 I: Checking whether the package is not for us
Sat Mar 8 17:39:07 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net.
Sat Mar 8 17:39:07 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net.
Sat Mar 8 17:39:48 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Apr 10 12:02:06 -12 2026
I: pbuilder-time-stamp: 1775865726
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [prank_0.0.170427+dfsg-3.dsc]
I: copying [./prank_0.0.170427+dfsg.orig.tar.xz]
I: copying [./prank_0.0.170427+dfsg-3.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./prank_0.0.170427+dfsg-3.dsc: unsupported subcommand
dpkg-source: info: extracting prank in prank-0.0.170427+dfsg
dpkg-source: info: unpacking prank_0.0.170427+dfsg.orig.tar.xz
dpkg-source: info: unpacking prank_0.0.170427+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying fix-gcc6.patch
dpkg-source: info: applying cross.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/79908/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='62a9c327616a4697b48e75062d4d4a4d'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='79908'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2TVz0ug8/pbuilderrc_TL3l --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2TVz0ug8/b1 --logfile b1/build.log prank_0.0.170427+dfsg-3.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://213.165.73.152:3128'
I: uname -a
Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/79908/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19787 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.8 MB of archives. After unpacking 78.2 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-7 [301 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB]
Fetched 20.8 MB in 1s (23.7 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
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(Reading database ... 100%
(Reading database ... 19787 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:i386.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic1t64:i386 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.23.1-1_i386.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ...
Unpacking libuchardet0:i386 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-7_i386.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.4-5_i386.deb ...
Unpacking bsdextrautils (2.40.4-5) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ...
Unpacking man-db (2.13.0-1) ...
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Preparing to unpack .../10-m4_1.4.19-7_i386.deb ...
Unpacking m4 (1.4.19-7) ...
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Preparing to unpack .../11-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
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Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
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Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
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Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
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Preparing to unpack .../16-libtool_2.5.4-3_all.deb ...
Unpacking libtool (2.5.4-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
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Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ...
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Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:i386.
Preparing to unpack .../23-libunistring5_1.3-1_i386.deb ...
Unpacking libunistring5:i386 (1.3-1) ...
Selecting previously unselected package libicu72:i386.
Preparing to unpack .../24-libicu72_72.1-6_i386.deb ...
Unpacking libicu72:i386 (72.1-6) ...
Selecting previously unselected package libxml2:i386.
Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b2_i386.deb ...
Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
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Unpacking gettext (0.23.1-1) ...
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Unpacking intltool-debian (0.35.0+20060710.6) ...
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Preparing to unpack .../29-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Setting up libpipeline1:i386 (1.5.8-1) ...
Setting up libicu72:i386 (72.1-6) ...
Setting up bsdextrautils (2.40.4-5) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libmagic1t64:i386 (1:5.45-3+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-7) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:i386 (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libunistring5:i386 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:i386 (0.0.8-1+b2) ...
Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/prank-0.0.170427+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../prank_0.0.170427+dfsg-3_source.changes
dpkg-buildpackage: info: source package prank
dpkg-buildpackage: info: source version 0.0.170427+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/prank-0.0.170427+dfsg'
# No distclean! See README.source
( cd src ; make clean )
make[2]: Entering directory '/build/reproducible-path/prank-0.0.170427+dfsg/src'
rm -f writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o bppancestors.o
rm -f *~ core *.core
make[2]: Leaving directory '/build/reproducible-path/prank-0.0.170427+dfsg/src'
( cd src ; rm -f prank prank.1 )
make[1]: Leaving directory '/build/reproducible-path/prank-0.0.170427+dfsg'
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
debian/rules binary
dh binary --sourcedirectory=src
dh_update_autotools_config -O--sourcedirectory=src
dh_autoreconf -O--sourcedirectory=src
dh_auto_configure -O--sourcedirectory=src
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/prank-0.0.170427+dfsg'
dh_auto_build --verbose
cd src && make -j22 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/reproducible-path/prank-0.0.170427+dfsg/src'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o writefile.o writefile.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o treenode.o treenode.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o translatesequences.o translatesequences.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o terminalsequence.o terminalsequence.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o terminalnode.o terminalnode.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o site.o site.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o sequence.o sequence.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readnewick.o readnewick.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readfile.o readfile.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readalignment.o readalignment.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o pwsite.o pwsite.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o pwhirschberg.o pwhirschberg.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o prank.o prank.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o postprobability.o postprobability.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o phylomatchscore.o phylomatchscore.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o node.o node.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o intmatrix.o intmatrix.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o hmmodel.o hmmodel.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o hirschberg.o hirschberg.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o guidetree.o guidetree.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o fullprobability.o fullprobability.cpp
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from terminalsequence.cpp:24:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o flmatrix.o flmatrix.cpp
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from postprobability.cpp:23:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from translatesequences.cpp:22:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from site.cpp:22:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from phylomatchscore.cpp:23:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from terminalnode.h:23,
from terminalnode.cpp:22:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from treenode.cpp:25:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from readalignment.h:28,
from readalignment.cpp:23:
treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from guidetree.cpp:25:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from hirschberg.cpp:25:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from readnewick.h:29,
from readnewick.cpp:26:
treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from writefile.h:25,
from writefile.cpp:27:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from fullprobability.cpp:25:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from pwhirschberg.cpp:25:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from hmmodel.cpp:26:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from readnewick.h:29,
from progressivealignment.cpp:28:
treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from progressivealignment.h:30,
from prank.cpp:28:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o eigen.o eigen.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o dbmatrix.o dbmatrix.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o characterprobability.o characterprobability.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o boolmatrix.o boolmatrix.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralsequence.o ancestralsequence.cpp
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from characterprobability.cpp:24:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralnode.o ancestralnode.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o check_version.o check_version.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o mafft_alignment.o mafft_alignment.cpp
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from ancestralsequence.cpp:24:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/prank-0.0.170427+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o bppancestors.o bppancestors.cpp
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from ancestralnode.cpp:27:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
pod2man --utf8 --center "The Probabilistic Alignment Kit" -release="v.121211" --section=1 --name="PRANK" prank.1.pod >prank.1
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from mafft_alignment.cpp:6:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
ancestralnode.cpp: In member function 'std::string AncestralNode::getThisAncCharactersAt(int)':
ancestralnode.cpp:1517:1: warning: control reaches end of non-void function [-Wreturn-type]
1517 | }
| ^
In file included from ancestralnode.h:24,
from hmmodel.h:36,
from config.h:31,
from exonerate_reads.cpp:10:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
In file included from ancestralnode.h:24,
from bppancestors.h:24,
from bppancestors.cpp:29:
./treenode.h: In member function 'virtual bool TreeNode::updateInsertionSite(int, bool)':
./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type]
353 | virtual bool updateInsertionSite(int i, bool has_parent) {}
| ^
guidetree.cpp: In member function 'void GuideTree::computeTree(std::vector<std::__cxx11::basic_string<char> >*, std::vector<std::__cxx11::basic_string<char> >*, IntMatrix*)':
guidetree.cpp:162:37: warning: '%i' directive writing between 1 and 10 bytes into a region of size between 6 and 15 [-Wformat-overflow=]
162 | sprintf(prop,"%i to %i",i,j);
| ^~
guidetree.cpp:162:30: note: directive argument in the range [1, 2147483647]
162 | sprintf(prop,"%i to %i",i,j);
| ^~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from guidetree.cpp:21:
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void GuideTree::computeTree(std::vector<std::__cxx11::basic_string<char> >*, std::vector<std::__cxx11::basic_string<char> >*, IntMatrix*)' at guidetree.cpp:162:24:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 25 bytes into a destination of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
hmmodel.cpp: In member function 'void HMModel::readModel(const char*)':
hmmodel.cpp:338:31: warning: '%i' directive writing between 1 and 11 bytes into a region of size 5 [-Wformat-overflow=]
338 | sprintf(str,"state%i",l);
| ^~
hmmodel.cpp:338:25: note: directive argument in the range [-2147483647, 2147483646]
338 | sprintf(str,"state%i",l);
| ^~~~~~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /usr/include/c++/14/fstream:43,
from hmmodel.cpp:24:
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void HMModel::readModel(const char*)' at hmmodel.cpp:338:20:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 17 bytes into a destination of size 10
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -o prank writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o bppancestors.o -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/reproducible-path/prank-0.0.170427+dfsg/src'
make[1]: Leaving directory '/build/reproducible-path/prank-0.0.170427+dfsg'
dh_auto_test -O--sourcedirectory=src
create-stamp debian/debhelper-build-stamp
dh_testroot -O--sourcedirectory=src
dh_prep -O--sourcedirectory=src
dh_auto_install --destdir=debian/prank/ -O--sourcedirectory=src
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/prank-0.0.170427+dfsg'
dh_install src/prank /usr/bin
dh_installman src/prank.1
make[1]: Leaving directory '/build/reproducible-path/prank-0.0.170427+dfsg'
dh_installdocs -O--sourcedirectory=src
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/build/reproducible-path/prank-0.0.170427+dfsg'
dh_installchangelogs VERSION_HISTORY
make[1]: Leaving directory '/build/reproducible-path/prank-0.0.170427+dfsg'
dh_installexamples -O--sourcedirectory=src
dh_installman -O--sourcedirectory=src
dh_installsystemduser -O--sourcedirectory=src
dh_perl -O--sourcedirectory=src
dh_link -O--sourcedirectory=src
dh_strip_nondeterminism -O--sourcedirectory=src
dh_compress -O--sourcedirectory=src
dh_fixperms -O--sourcedirectory=src
dh_missing -O--sourcedirectory=src
dh_dwz -a -O--sourcedirectory=src
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dh_installdeb -O--sourcedirectory=src
dh_gencontrol -O--sourcedirectory=src
dh_md5sums -O--sourcedirectory=src
dh_builddeb -O--sourcedirectory=src
dpkg-deb: building package 'prank' in '../prank_0.0.170427+dfsg-3_i386.deb'.
dpkg-deb: building package 'prank-dbgsym' in '../prank-dbgsym_0.0.170427+dfsg-3_i386.deb'.
dpkg-genbuildinfo --build=binary -O../prank_0.0.170427+dfsg-3_i386.buildinfo
dpkg-genchanges --build=binary -O../prank_0.0.170427+dfsg-3_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/79908 and its subdirectories
I: Current time: Fri Apr 10 12:02:45 -12 2026
I: pbuilder-time-stamp: 1775865765
Sat Mar 8 17:39:49 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net.
Sat Mar 8 17:39:49 UTC 2025 I: Preparing to do remote build '2' on ionos2-i386.debian.net.
Sat Mar 8 17:41:55 UTC 2025 I: Deleting $TMPDIR on ionos2-i386.debian.net.
Sat Mar 8 17:41:55 UTC 2025 I: prank_0.0.170427+dfsg-3_i386.changes:
Format: 1.8
Date: Fri, 30 Oct 2020 15:25:58 +0100
Source: prank
Binary: prank prank-dbgsym
Architecture: i386
Version: 0.0.170427+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
prank - Probabilistic Alignment Kit for DNA, codon and amino-acid sequenc
Changes:
prank (0.0.170427+dfsg-3) unstable; urgency=medium
.
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Secure URI in copyright format (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Fix autopkgtest
Checksums-Sha1:
66cf5c785e18dbe151ac639a39641a3d0b549520 3420276 prank-dbgsym_0.0.170427+dfsg-3_i386.deb
c9a27042ec569fb323281261a8a7d423cde4f000 4863 prank_0.0.170427+dfsg-3_i386.buildinfo
7a9aa53eea9511ade457c07a7335eef96c9d98a8 415944 prank_0.0.170427+dfsg-3_i386.deb
Checksums-Sha256:
c8de235e6d4af202fe909cc32bd9b3ff3320419525d642552b30c4f475be67d7 3420276 prank-dbgsym_0.0.170427+dfsg-3_i386.deb
cdf3ab203b6d938e24a4fef678dd0d985990258bfdcf64d5896a9000df69a445 4863 prank_0.0.170427+dfsg-3_i386.buildinfo
0109352cbb867f4986c75172e4cfee61a67b72c5d99f927db94fff78b7cbe0b8 415944 prank_0.0.170427+dfsg-3_i386.deb
Files:
de9fa642620ebe5331009844b1ba567b 3420276 debug optional prank-dbgsym_0.0.170427+dfsg-3_i386.deb
fd37028650058fca945ed3f0943d160a 4863 science optional prank_0.0.170427+dfsg-3_i386.buildinfo
a6cde9f356852582e152d479b983e8d4 415944 science optional prank_0.0.170427+dfsg-3_i386.deb
Sat Mar 8 17:41:56 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_4-55349.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2TVz0ug8/prank_0.0.170427+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2TVz0ug8/prank_0.0.170427+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2TVz0ug8/prank_0.0.170427+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2TVz0ug8/b1/prank_0.0.170427+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.2TVz0ug8/b2/prank_0.0.170427+dfsg-3_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 251ms
CPU time consumed: 251ms
Sat Mar 8 17:41:58 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Sat Mar 8 17:41:58 UTC 2025 I: prank from trixie built successfully and reproducibly on i386.
Sat Mar 8 17:42:00 UTC 2025 I: Submitting .buildinfo files to external archives:
Sat Mar 8 17:42:00 UTC 2025 I: Submitting 8.0K b1/prank_0.0.170427+dfsg-3_i386.buildinfo.asc
Sat Mar 8 17:42:03 UTC 2025 I: Submitting 8.0K b2/prank_0.0.170427+dfsg-3_i386.buildinfo.asc
Sat Mar 8 17:42:07 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Mar 8 17:42:07 UTC 2025 I: Done submitting .buildinfo files.
Sat Mar 8 17:42:07 UTC 2025 I: Removing signed prank_0.0.170427+dfsg-3_i386.buildinfo.asc files:
removed './b1/prank_0.0.170427+dfsg-3_i386.buildinfo.asc'
removed './b2/prank_0.0.170427+dfsg-3_i386.buildinfo.asc'