Tue Jan 28 14:39:34 UTC 2025 I: starting to build python-cgecore/trixie/i386 on jenkins on '2025-01-28 14:39'
Tue Jan 28 14:39:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/40671/console.log
Tue Jan 28 14:39:34 UTC 2025 I: Downloading source for trixie/python-cgecore=1.5.6+ds-2
--2025-01-28 14:39:34-- http://deb.debian.org/debian/pool/main/p/python-cgecore/python-cgecore_1.5.6%2bds-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2148 (2.1K) [text/prs.lines.tag]
Saving to: ‘python-cgecore_1.5.6+ds-2.dsc’
0K .. 100% 295M=0s
2025-01-28 14:39:34 (295 MB/s) - ‘python-cgecore_1.5.6+ds-2.dsc’ saved [2148/2148]
Tue Jan 28 14:39:34 UTC 2025 I: python-cgecore_1.5.6+ds-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-cgecore
Binary: python3-cgecore
Architecture: all
Version: 1.5.6+ds-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bitbucket.org/genomicepidemiology/cge_core_module/
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/python-cgecore
Vcs-Git: https://salsa.debian.org/med-team/python-cgecore.git
Testsuite: autopkgtest-pkg-python
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-biopython
Package-List:
python3-cgecore deb python optional arch=all
Checksums-Sha1:
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b82660b593cabd52eda5aab055c15d46d9b8c409 2824 python-cgecore_1.5.6+ds-2.debian.tar.xz
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Files:
baed19076f0ec4a42eb2d68800d4128f 26276 python-cgecore_1.5.6+ds.orig.tar.xz
8b5b7eacb24c932d4ebbda1ff0cdb593 2824 python-cgecore_1.5.6+ds-2.debian.tar.xz
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Tue Jan 28 14:39:34 UTC 2025 I: Checking whether the package is not for us
Tue Jan 28 14:39:34 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net.
Tue Jan 28 14:39:34 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net.
Tue Jan 28 14:40:45 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Mar 2 09:02:35 -12 2026
I: pbuilder-time-stamp: 1772485355
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [python-cgecore_1.5.6+ds-2.dsc]
I: copying [./python-cgecore_1.5.6+ds.orig.tar.xz]
I: copying [./python-cgecore_1.5.6+ds-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./python-cgecore_1.5.6+ds-2.dsc: unsupported subcommand
dpkg-source: info: extracting python-cgecore in python-cgecore-1.5.6+ds
dpkg-source: info: unpacking python-cgecore_1.5.6+ds.orig.tar.xz
dpkg-source: info: unpacking python-cgecore_1.5.6+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python3.13.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/11765/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='2710e58c9f3b4099b44c0392bf305340'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='11765'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hEp2MeRk/pbuilderrc_mjpz --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hEp2MeRk/b1 --logfile b1/build.log python-cgecore_1.5.6+ds-2.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://213.165.73.152:3128'
I: uname -a
Linux ionos16-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/11765/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-biopython
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19841 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs
0 packages upgraded, 110 newly installed, 0 to remove and 0 not upgraded.
Need to get 61.7 MB of archives. After unpacking 227 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.1-3 [858 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.1-3 [2264 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-6 [257 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.6-1 [21.2 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.1-3 [1980 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.1-3 [740 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 sgml-base all 1.31 [15.4 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-4 [201 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 22 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-4 [723 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.23 [90.6 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-2 [539 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 37 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-4 [1632 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 debhelper all 13.23 [919 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 52 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.6.0-1 [720 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250108 [113 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 libfontenc1 i386 1:1.1.8-1+b2 [23.4 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB]
Get: 62 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.44-3 [288 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23.2 [216 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 xfonts-utils i386 1:7.7+7 [95.1 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get: 68 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-2 [317 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-4 [143 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-2 [402 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB]
Get: 74 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.10-2 [337 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.10-2 [834 kB]
Get: 77 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB]
Get: 78 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b4 [28.8 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.2-2 [591 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB]
Get: 84 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-12 [735 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.82.4-2 [1573 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB]
Get: 89 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB]
Get: 91 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-4 [2194 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB]
Get: 93 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.0-2+b4 [210 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.2-1 [14.6 kB]
Get: 96 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.5.0-0.1 [329 kB]
Get: 98 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB]
Get: 99 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB]
Get: 100 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB]
Get: 101 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-13 [4751 kB]
Get: 102 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 103 http://deb.debian.org/debian trixie/main i386 python3-pil i386 10.4.0-1.1 [512 kB]
Get: 104 http://deb.debian.org/debian trixie/main i386 python3-cairo i386 1.26.1-2+b1 [131 kB]
Get: 105 http://deb.debian.org/debian trixie/main i386 python3-freetype all 2.5.1-1 [89.3 kB]
Get: 106 http://deb.debian.org/debian trixie/main i386 python3-rlpycairo all 0.3.0-3 [9904 B]
Get: 107 http://deb.debian.org/debian trixie/main i386 python3-reportlab all 4.2.5-1 [1117 kB]
Get: 108 http://deb.debian.org/debian trixie/main i386 xml-core all 0.19 [20.1 kB]
Get: 109 http://deb.debian.org/debian trixie/main i386 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 110 http://deb.debian.org/debian trixie/main i386 python3-biopython i386 1.84+dfsg-4+b2 [1648 kB]
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Selecting previously unselected package libopenjp2-7:i386.
Preparing to unpack .../80-libopenjp2-7_2.5.0-2+b4_i386.deb ...
Unpacking libopenjp2-7:i386 (2.5.0-2+b4) ...
Selecting previously unselected package libraqm0:i386.
Preparing to unpack .../81-libraqm0_0.10.2-1_i386.deb ...
Unpacking libraqm0:i386 (0.10.2-1) ...
Selecting previously unselected package libsharpyuv0:i386.
Preparing to unpack .../82-libsharpyuv0_1.5.0-0.1_i386.deb ...
Unpacking libsharpyuv0:i386 (1.5.0-0.1) ...
Selecting previously unselected package libwebp7:i386.
Preparing to unpack .../83-libwebp7_1.5.0-0.1_i386.deb ...
Unpacking libwebp7:i386 (1.5.0-0.1) ...
Selecting previously unselected package libtiff6:i386.
Preparing to unpack .../84-libtiff6_4.5.1+git230720-5_i386.deb ...
Unpacking libtiff6:i386 (4.5.1+git230720-5) ...
Selecting previously unselected package libwebpdemux2:i386.
Preparing to unpack .../85-libwebpdemux2_1.5.0-0.1_i386.deb ...
Unpacking libwebpdemux2:i386 (1.5.0-0.1) ...
Selecting previously unselected package libwebpmux3:i386.
Preparing to unpack .../86-libwebpmux3_1.5.0-0.1_i386.deb ...
Unpacking libwebpmux3:i386 (1.5.0-0.1) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../87-python3-numpy_1%3a1.26.4+ds-13_i386.deb ...
Unpacking python3-numpy (1:1.26.4+ds-13) ...
Selecting previously unselected package python3-chardet.
Preparing to unpack .../88-python3-chardet_5.2.0+dfsg-2_all.deb ...
Unpacking python3-chardet (5.2.0+dfsg-2) ...
Selecting previously unselected package python3-pil:i386.
Preparing to unpack .../89-python3-pil_10.4.0-1.1_i386.deb ...
Unpacking python3-pil:i386 (10.4.0-1.1) ...
Selecting previously unselected package python3-cairo.
Preparing to unpack .../90-python3-cairo_1.26.1-2+b1_i386.deb ...
Unpacking python3-cairo (1.26.1-2+b1) ...
Selecting previously unselected package python3-freetype.
Preparing to unpack .../91-python3-freetype_2.5.1-1_all.deb ...
Unpacking python3-freetype (2.5.1-1) ...
Selecting previously unselected package python3-rlpycairo.
Preparing to unpack .../92-python3-rlpycairo_0.3.0-3_all.deb ...
Unpacking python3-rlpycairo (0.3.0-3) ...
Selecting previously unselected package python3-reportlab.
Preparing to unpack .../93-python3-reportlab_4.2.5-1_all.deb ...
Unpacking python3-reportlab (4.2.5-1) ...
Selecting previously unselected package xml-core.
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Unpacking xml-core (0.19) ...
Selecting previously unselected package w3c-sgml-lib.
Preparing to unpack .../95-w3c-sgml-lib_1.3-3_all.deb ...
Unpacking w3c-sgml-lib (1.3-3) ...
Selecting previously unselected package python3-biopython.
Preparing to unpack .../96-python3-biopython_1.84+dfsg-4+b2_i386.deb ...
Unpacking python3-biopython (1.84+dfsg-4+b2) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:i386 (1.5.8-1) ...
Setting up libgraphite2-3:i386 (1.3.14-2+b1) ...
Setting up liblcms2-2:i386 (2.16-2) ...
Setting up libpixman-1-0:i386 (0.44.0-3) ...
Setting up libsharpyuv0:i386 (1.5.0-0.1) ...
Setting up libxau6:i386 (1:1.0.11-1) ...
Setting up libxdmcp6:i386 (1:1.1.5-1) ...
Setting up libxcb1:i386 (1.17.0-2+b1) ...
Setting up libicu72:i386 (72.1-6) ...
Setting up liblerc4:i386 (4.0.0+ds-5) ...
Setting up bsdextrautils (2.40.4-1) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libxcb-render0:i386 (1.17.0-2+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.23) ...
Setting up libbrotli1:i386 (1.1.0-2+b6) ...
Setting up libmagic1t64:i386 (1:5.45-3+b1) ...
Setting up x11-common (1:7.7+23.2) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libdeflate0:i386 (1.23-1+b1) ...
Setting up gettext-base (0.22.5-4) ...
Setting up m4 (1.4.19-5) ...
Setting up libxcb-shm0:i386 (1.17.0-2+b1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libjbig0:i386 (2.1-6.1+b2) ...
Setting up libelf1t64:i386 (0.192-4) ...
Setting up tzdata (2024b-6) ...
Current default time zone: 'Etc/UTC'
Local time is now: Mon Mar 2 21:02:58 UTC 2026.
Universal Time is now: Mon Mar 2 21:02:58 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libfontenc1:i386 (1:1.1.8-1+b2) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:i386 (3.12.0-4) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:i386 (1.0.16-1) ...
Setting up libimagequant0:i386 (2.18.0-1+b2) ...
Setting up libunistring5:i386 (1.3-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:i386 (1.6.44-3) ...
Setting up autopoint (0.22.5-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libgfortran5:i386 (14.2.0-12) ...
Setting up autoconf (2.72-3) ...
Setting up libwebp7:i386 (1.5.0-0.1) ...
Setting up libffi8:i386 (3.4.6-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libtiff6:i386 (4.5.1+git230720-5) ...
Setting up libuchardet0:i386 (0.0.8-1+b2) ...
Setting up libopenjp2-7:i386 (2.5.0-2+b4) ...
Setting up libx11-6:i386 (2:1.8.10-2) ...
Setting up netbase (6.4) ...
Setting up sgml-base (1.31) ...
Setting up libwebpmux3:i386 (1.5.0-0.1) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-1) ...
Setting up liblapack3:i386 (3.12.0-4) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up gettext (0.22.5-4) ...
Setting up libxrender1:i386 (1:0.9.10-1.1+b4) ...
Setting up libtool (2.5.4-2) ...
Setting up fontconfig-config (2.15.0-2) ...
Setting up libwebpdemux2:i386 (1.5.0-0.1) ...
Setting up libxext6:i386 (2:1.3.4-1+b3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libglib2.0-0t64:i386 (2.82.4-2) ...
No schema files found: doing nothing.
Setting up libfreetype6:i386 (2.13.3+dfsg-1) ...
Setting up libreadline8t64:i386 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up xml-core (0.19) ...
Setting up libharfbuzz0b:i386 (10.2.0-1) ...
Setting up libfontconfig1:i386 (2.15.0-2) ...
Setting up libpython3.13-stdlib:i386 (3.13.1-3) ...
Setting up libpython3-stdlib:i386 (3.13.1-2) ...
Setting up python3.13 (3.13.1-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3 (3.13.1-2) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-freetype (2.5.1-1) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:i386 (1.18.2-2) ...
Setting up python3-chardet (5.2.0+dfsg-2) ...
Setting up libraqm0:i386 (0.10.2-1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-numpy (1:1.26.4+ds-13) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up python3-cairo (1.26.1-2+b1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up debhelper (13.23) ...
Setting up fonts-urw-base35 (20200910-8) ...
Setting up python3-pil:i386 (10.4.0-1.1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-rlpycairo (0.3.0-3) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-reportlab (4.2.5-1) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up dh-python (6.20250108) ...
Processing triggers for libc-bin (2.40-6) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.84+dfsg-4+b2) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/python-cgecore-1.5.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cgecore_1.5.6+ds-2_source.changes
dpkg-buildpackage: info: source package python-cgecore
dpkg-buildpackage: info: source version 1.5.6+ds-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Alexandre Detiste <tchet@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/python-cgecore-1.5.6+ds'
dh_auto_clean
I: pybuild base:311: python3.13 setup.py clean
running clean
removing '/build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build' (and everything under it)
'build/bdist.linux-i686' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
rm -rf cgecore.egg-info
make[1]: Leaving directory '/build/reproducible-path/python-cgecore-1.5.6+ds'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore
copying cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore
copying cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore
copying cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore
copying cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore
copying cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore
copying cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore
creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster
copying cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster
copying cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster
copying cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster
creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo
copying cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo
copying cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo
copying cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo
copying cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo
copying cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build; python3.13 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-cgecore/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running install_lib
creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore
creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster
creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/__pycache__/blaster.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore
creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo
creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo
creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__pycache__/cmdline.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__pycache__/argumentparsing.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__pycache__/utility.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__
copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/cgefinder.py to cgefinder.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/cmdline.py to cmdline.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/utility.py to utility.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/argumentparsing.py to argumentparsing.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/alignment.py to alignment.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/blaster.py to blaster.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/run_blaster.py to run_blaster.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/gramstain.py to gramstain.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/species.py to species.cpython-313.pyc
byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/__init__.py to __init__.cpython-313.pyc
running install_egg_info
running egg_info
creating cgecore.egg-info
writing cgecore.egg-info/PKG-INFO
writing dependency_links to cgecore.egg-info/dependency_links.txt
writing top-level names to cgecore.egg-info/top_level.txt
writing manifest file 'cgecore.egg-info/SOURCES.txt'
reading manifest file 'cgecore.egg-info/SOURCES.txt'
writing manifest file 'cgecore.egg-info/SOURCES.txt'
Copying cgecore.egg-info to /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore-1.5.6.egg-info
Skipping SOURCES.txt
running install_scripts
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cgecore' in '../python3-cgecore_1.5.6+ds-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-cgecore_1.5.6+ds-2_i386.buildinfo
dpkg-genchanges --build=binary -O../python-cgecore_1.5.6+ds-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/11765 and its subdirectories
I: Current time: Mon Mar 2 09:03:45 -12 2026
I: pbuilder-time-stamp: 1772485425
Tue Jan 28 14:40:46 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net.
Tue Jan 28 14:40:46 UTC 2025 I: Preparing to do remote build '2' on ionos2-i386.debian.net.
Tue Jan 28 14:43:06 UTC 2025 I: Deleting $TMPDIR on ionos2-i386.debian.net.
Tue Jan 28 14:43:06 UTC 2025 I: python-cgecore_1.5.6+ds-2_i386.changes:
Format: 1.8
Date: Tue, 19 Nov 2024 21:23:35 +0100
Source: python-cgecore
Binary: python3-cgecore
Architecture: all
Version: 1.5.6+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Alexandre Detiste <tchet@debian.org>
Description:
python3-cgecore - Python3 module for the Center for Genomic Epidemiology
Closes: 1084632 1085895
Changes:
python-cgecore (1.5.6+ds-2) unstable; urgency=medium
.
* Team upload.
* Patch out regexp that causes SyntaxWarning's (Closes: #1085895)
* Patch out usage of "pipes" module removed from Py3.13 (Closes: #1084632)
* Use dh-sequence-python3
Checksums-Sha1:
f368f2620a694680bf845584dd0ad880f8e68266 7148 python-cgecore_1.5.6+ds-2_i386.buildinfo
b7990b8d36e8bc63cb9b84b0b5d06ebefaeccea9 28760 python3-cgecore_1.5.6+ds-2_all.deb
Checksums-Sha256:
0cbed0565b5abddb38d8ade0f94464ec02cfc571db3ebd4c6759b91c86135eaf 7148 python-cgecore_1.5.6+ds-2_i386.buildinfo
77ac98abaa0b129a6ec005194ed0bab3c51d5167880199448f4a9d704e8ac215 28760 python3-cgecore_1.5.6+ds-2_all.deb
Files:
fbc94318df4910ca812f3d2a4a090902 7148 python optional python-cgecore_1.5.6+ds-2_i386.buildinfo
a82fbabe83c16ddaddafbeff5f98c308 28760 python optional python3-cgecore_1.5.6+ds-2_all.deb
Tue Jan 28 14:43:07 UTC 2025 I: diffoscope 286 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_10-40671.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.hEp2MeRk/python-cgecore_1.5.6+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.hEp2MeRk/python-cgecore_1.5.6+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.hEp2MeRk/python-cgecore_1.5.6+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.hEp2MeRk/b1/python-cgecore_1.5.6+ds-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.hEp2MeRk/b2/python-cgecore_1.5.6+ds-2_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 236ms
CPU time consumed: 238ms
Tue Jan 28 14:43:08 UTC 2025 I: diffoscope 286 found no differences in the changes files, and a .buildinfo file also exists.
Tue Jan 28 14:43:08 UTC 2025 I: python-cgecore from trixie built successfully and reproducibly on i386.
Tue Jan 28 14:43:09 UTC 2025 I: Submitting .buildinfo files to external archives:
Tue Jan 28 14:43:09 UTC 2025 I: Submitting 8.0K b1/python-cgecore_1.5.6+ds-2_i386.buildinfo.asc
Tue Jan 28 14:43:09 UTC 2025 I: Submitting 8.0K b2/python-cgecore_1.5.6+ds-2_i386.buildinfo.asc
Tue Jan 28 14:43:10 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Tue Jan 28 14:43:10 UTC 2025 I: Done submitting .buildinfo files.
Tue Jan 28 14:43:10 UTC 2025 I: Removing signed python-cgecore_1.5.6+ds-2_i386.buildinfo.asc files:
removed './b1/python-cgecore_1.5.6+ds-2_i386.buildinfo.asc'
removed './b2/python-cgecore_1.5.6+ds-2_i386.buildinfo.asc'