Wed Feb 5 09:51:35 UTC 2025 I: starting to build python-pdbfixer/trixie/i386 on jenkins on '2025-02-05 09:51' Wed Feb 5 09:51:35 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/51537/console.log Wed Feb 5 09:51:35 UTC 2025 I: Downloading source for trixie/python-pdbfixer=1.9-6 --2025-02-05 09:51:35-- http://deb.debian.org/debian/pool/main/p/python-pdbfixer/python-pdbfixer_1.9-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2196 (2.1K) [text/prs.lines.tag] Saving to: ‘python-pdbfixer_1.9-6.dsc’ 0K .. 100% 353M=0s 2025-02-05 09:51:36 (353 MB/s) - ‘python-pdbfixer_1.9-6.dsc’ saved [2196/2196] Wed Feb 5 09:51:36 UTC 2025 I: python-pdbfixer_1.9-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pdbfixer Binary: python3-pdbfixer Architecture: all Version: 1.9-6 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://github.com/openmm/pdbfixer Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-pdbfixer Vcs-Git: https://salsa.debian.org/python-team/packages/python-pdbfixer.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3, python3-legacy-cgi, python3-openmm, python3-pytest , python3-setuptools, rename Package-List: python3-pdbfixer deb python optional arch=all Checksums-Sha1: 4c91ec5a75bb631f5f90db425c4f609aa61eb75e 648085 python-pdbfixer_1.9.orig.tar.gz a56d2bdfd7787b7f3c9e3bf4e1ee2339b4e84317 3184 python-pdbfixer_1.9-6.debian.tar.xz Checksums-Sha256: 88b9a77e50655f89d0eb2075093773e82c27a4cef842cb7d735c877b20cd39fb 648085 python-pdbfixer_1.9.orig.tar.gz 12b0c859dc23297be087156a58d58653e40591dda88992b4437d880f3aeb290a 3184 python-pdbfixer_1.9-6.debian.tar.xz Files: 48fc0c9c12eda19e786acbc9e62433f5 648085 python-pdbfixer_1.9.orig.tar.gz 1bc533ab3132210f4eb21e397fc5a023 3184 python-pdbfixer_1.9-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmeXe2URHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrAwg/7BfC2o1HEOr50iSpSXLsXt0f6VL4X68t/ sPoOOgOamDxoUXVqSbhAQNHz+eFAXh3Fmd+FTMkE76ajP2yPuFnDfD/JYyVlqlXQ BT8ynq86u3titsdZqca0WehUKe9vpXJ/mk7CyRkjJFXlUnu8EqfmugfaPCZYVHl2 QoTjkZ+fmZChLXvGvngwjOnXvvLgzhqNnpc88IsNFukRU1rB16vYpW4JB0kP1Jn0 tHbUkjEu46BmpzHxi858etwyQ1GPktD4+V4uZoTZbx3LaOirl/8t0YwkSIFAWuq/ 0ixDbXYxsaWVIvRsjBT/9thymn8vHT7trAE2H5FstRZq+QoQEPO9eALSIjPIA/P2 FR/z2+SY3TS/lbnp2xxj5izyYMAmdAAaEzvhKmm9YztM/h5567xTq1FZC7aDQ99a OhRi1heDfHMR9EQ3xuTS40kZlUTnwJwG3hHgm2INGmdtqiKo3DMoa2fcjYtcePlU ycUEl4DlYtIQ51+Va1Yvj0cHhP01VE5Tz6cmAU2DZly045G9V3PuA97xLWzXMoXx zNdouY6N0+2rqOTwOYkNCWIus8CrKu8odkswytCpFxOhDGgeQJ8hvEPGXPZmHRw1 D8TNNH/TERYDEogXxic1i5jTRmHgUWh+SS4YFbsXM+WltLjFGcpArwyMsDxJy2BF LmuZzPp3r6w= =wIgR -----END PGP SIGNATURE----- Wed Feb 5 09:51:36 UTC 2025 I: Checking whether the package is not for us Wed Feb 5 09:51:36 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net. Wed Feb 5 09:51:36 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Wed Feb 5 09:52:11 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Mar 10 04:14:37 -12 2026 I: pbuilder-time-stamp: 1773159277 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-pdbfixer_1.9-6.dsc] I: copying [./python-pdbfixer_1.9.orig.tar.gz] I: copying [./python-pdbfixer_1.9-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pdbfixer_1.9-6.dsc: unsupported subcommand dpkg-source: info: extracting python-pdbfixer in python-pdbfixer-1.9 dpkg-source: info: unpacking python-pdbfixer_1.9.orig.tar.gz dpkg-source: info: unpacking python-pdbfixer_1.9-6.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/39510/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e0d02b7bfaa24b68882ed3b1dfb3f30c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='39510' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6AqhAXKi/pbuilderrc_bZeJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6AqhAXKi/b1 --logfile b1/build.log python-pdbfixer_1.9-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/39510/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3, python3-legacy-cgi, python3-openmm, python3-pytest, python3-setuptools, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19829 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-legacy-cgi; however: Package python3-legacy-cgi is not installed. pbuilder-satisfydepends-dummy depends on python3-openmm; however: Package python3-openmm is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-legacy-cgi{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} rename{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 29.2 MB of archives. After unpacking 112 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: python3-openmm which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-legacy-cgi{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} rename{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 29.2 MB of archives. After unpacking 112 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/39510 and its subdirectories Wed Feb 5 09:52:12 UTC 2025 W: No second build log, what happened? Wed Feb 5 09:52:12 UTC 2025 W: Downloading the build dependencies failed Wed Feb 5 09:52:12 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed Feb 5 09:52:12 UTC 2025 W: Network problems are automatically rescheduled after some hours.