Fri Feb 7 02:44:03 UTC 2025 I: starting to build seqtk/trixie/i386 on jenkins on '2025-02-07 02:43' Fri Feb 7 02:44:03 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/56496/console.log Fri Feb 7 02:44:03 UTC 2025 I: Downloading source for trixie/seqtk=1.4-2 --2025-02-07 02:44:03-- http://deb.debian.org/debian/pool/main/s/seqtk/seqtk_1.4-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1951 (1.9K) [text/prs.lines.tag] Saving to: ‘seqtk_1.4-2.dsc’ 0K . 100% 323M=0s 2025-02-07 02:44:03 (323 MB/s) - ‘seqtk_1.4-2.dsc’ saved [1951/1951] Fri Feb 7 02:44:03 UTC 2025 I: seqtk_1.4-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqtk Binary: seqtk Architecture: any Version: 1.4-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Brad Chapman Homepage: https://github.com/lh3/seqtk Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/seqtk Vcs-Git: https://salsa.debian.org/med-team/seqtk.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: seqtk deb science optional arch=any Checksums-Sha1: 7ad81a39447d1859afd8507ed176bfcfc6b106e4 23748 seqtk_1.4.orig.tar.gz bd2a016d9a2256c5d7dc0a74f53cbcf3799c3078 4516 seqtk_1.4-2.debian.tar.xz Checksums-Sha256: d124604ec24f29ed14ce127426ab90e0f3a2c0280c80d1a3ff8b1c09feede19c 23748 seqtk_1.4.orig.tar.gz db4e7877ef4b3af463a63a254d8afd07a909941257e2164f75ebd84a6a05fa6f 4516 seqtk_1.4-2.debian.tar.xz Files: 8fd02aee6308146c0595edd0af0e19fb 23748 seqtk_1.4.orig.tar.gz d1f12b1efd7ad8d9348a6e1928f746f2 4516 seqtk_1.4-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVM84YRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGJNA/9GC0g3eNY5oHTWgpdfFSqXzrqEA0PjL1k 1QF+cV35HlYsMph87psKCYw5uleXzDDLntaM67T79JcYuW1Bvgj+wlZfIe5QrY4X B1NG46iCPKSVCdFUvwvzS12AsQunBNFOw/dt1cqB7ZjQNeaBKI/lGC6t5j3U4Lt6 e7c42cRK/+x3ftYUAWZajCIb7vORc25sppXY4/9mJPkoLvw18Du/fX1W3TY2vBCe gjEXFtWtLTnFDbrwD0sXiX1Pn6m4TrS+2u8VQ+ttRWQcyt89F7ttH+0xTaEHn9/A xgZTx5VwVw1dsCOo11Rt0hSpgLXkiMK5vMk+Osk6k1Oj6ej0pyIRk/MA1U1mJZQ0 2J0UjXYKmBbJ9HCu4b+NY47D9ZmsO7UCOI6cUSrh9nkrCK+E3cSjiRvcUvDTDo8K 1HApUOV2MBRH8/oQJuEF8iAF3gLoZv034B8GPuCeixvmwVHfKEUuDM1CrDoVaM4C p/3kOtbvAEacYy/Ykd71B5G4C10kJ1XvzNi27DLrKgJs4+Re1pu88yerXpAR7nqP li1doOZp4brQyhGK2U8qFAcF9fL1Q0Awfl8i9y/Q5lIY+S4o5sZRpEd1HVb2H+Xc dXCi5jqIc4mgloxGcDWFTQ/My8f0UuW6sjQIz7C9DU2ulfevFDpa5eTagXzwQdEK 1djlihc3Jwc= =dkM7 -----END PGP SIGNATURE----- Fri Feb 7 02:44:03 UTC 2025 I: Checking whether the package is not for us Fri Feb 7 02:44:03 UTC 2025 I: Starting 1st build on remote node ionos6-i386.debian.net. Fri Feb 7 02:44:03 UTC 2025 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Fri Feb 7 02:44:27 UTC 2025 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Mar 11 21:07:05 -12 2026 I: pbuilder-time-stamp: 1773306425 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [seqtk_1.4-2.dsc] I: copying [./seqtk_1.4.orig.tar.gz] I: copying [./seqtk_1.4-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqtk_1.4-2.dsc: unsupported subcommand dpkg-source: info: extracting seqtk in seqtk-1.4 dpkg-source: info: unpacking seqtk_1.4.orig.tar.gz dpkg-source: info: unpacking seqtk_1.4-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/56296/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='72f58271d8344bb8a2a39a0525bcde7a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='56296' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3olqROzC/pbuilderrc_OOao --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3olqROzC/b1 --logfile b1/build.log seqtk_1.4-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/56296/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19828 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After unpacking 79.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-2 [96.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 21.7 MB in 0s (120 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19828 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-2_i386.deb ... Unpacking bsdextrautils (2.40.4-2) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../23-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_i386.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqtk-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqtk_1.4-2_source.changes dpkg-buildpackage: info: source package seqtk dpkg-buildpackage: info: source version 1.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j22 clean make[1]: Entering directory '/build/reproducible-path/seqtk-1.4' rm -fr gmon.out *.o ext/*.o a.out seqtk trimadap *~ *.a *.dSYM session* make[1]: Leaving directory '/build/reproducible-path/seqtk-1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/seqtk-1.4' dh_auto_build -- CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seqtk-1.4=. -fstack-protector-strong -Wformat -Werror=format-security" make -j22 "INSTALL=install --strip-program=true" "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seqtk-1.4=. -fstack-protector-strong -Wformat -Werror=format-security" make[2]: Entering directory '/build/reproducible-path/seqtk-1.4' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seqtk-1.4=. -fstack-protector-strong -Wformat -Werror=format-security seqtk.c -o seqtk -lz -lm -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 seqtk.c: In function 'stk_subseq': seqtk.c:691:71: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 691 | fprintf(stderr, "[subseq] %s: %d >= %ld\n", seq->name.s, beg, seq->seq.l); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c: In function 'stk_mergefa': seqtk.c:787:74: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 787 | fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c:787:81: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 787 | fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c: In function 'stk_famask': seqtk.c:870:74: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 870 | fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c:870:81: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 870 | fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c: In function 'stk_kfreq': seqtk.c:1789:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1789 | printf("%s\t%ld\t%c\t%d\t%d\n", ks->name.s, ks->seq.l, "+-"[which], cnt_nei[which], cnt[which]); | ~~^ ~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c: In function 'stk_telo': seqtk.c:1987:42: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] 1987 | printf("%s\t0\t%ld\t%ld\n", seq->name.s, max_i + 1, seq->seq.l); | ~~^ ~~~~~~~~~ | | | | long int int | %d seqtk.c:1987:47: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1987 | printf("%s\t0\t%ld\t%ld\n", seq->name.s, max_i + 1, seq->seq.l); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c:2004:39: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'ssize_t' {aka 'int'} [-Wformat=] 2004 | printf("%s\t%ld\t%ld\t%ld\n", seq->name.s, max_i, seq->seq.l, seq->seq.l); | ~~^ ~~~~~ | | | | long int ssize_t {aka int} | %d seqtk.c:2004:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 2004 | printf("%s\t%ld\t%ld\t%ld\n", seq->name.s, max_i, seq->seq.l, seq->seq.l); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c:2004:49: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 2004 | printf("%s\t%ld\t%ld\t%ld\n", seq->name.s, max_i, seq->seq.l, seq->seq.l); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d make[2]: Leaving directory '/build/reproducible-path/seqtk-1.4' make[1]: Leaving directory '/build/reproducible-path/seqtk-1.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/seqtk-1.4' echo "Ignore broken Makefile" Ignore broken Makefile make[1]: Leaving directory '/build/reproducible-path/seqtk-1.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqtk' in '../seqtk_1.4-2_i386.deb'. dpkg-deb: building package 'seqtk-dbgsym' in '../seqtk-dbgsym_1.4-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../seqtk_1.4-2_i386.buildinfo dpkg-genchanges --build=binary -O../seqtk_1.4-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/56296 and its subdirectories I: Current time: Wed Mar 11 21:07:26 -12 2026 I: pbuilder-time-stamp: 1773306446 Fri Feb 7 02:44:27 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Fri Feb 7 02:44:27 UTC 2025 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Fri Feb 7 02:45:22 UTC 2025 I: Deleting $TMPDIR on ionos2-i386.debian.net. Fri Feb 7 02:45:22 UTC 2025 I: seqtk_1.4-2_i386.changes: Format: 1.8 Date: Thu, 09 Nov 2023 20:17:13 +0700 Source: seqtk Binary: seqtk seqtk-dbgsym Architecture: i386 Version: 1.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: seqtk - Fast and lightweight tool for processing sequences in the FASTA o Changes: seqtk (1.4-2) unstable; urgency=medium . * Team upload. * d/patches/hardening.patch: Fix blhc in pipeline by adding CPPFLAGS Checksums-Sha1: 687cda43309a95094e00a6d57448c4ec905d4fc6 76008 seqtk-dbgsym_1.4-2_i386.deb b3c3fe82297cfe711eb628ee81dd6f3b60e159fb 4947 seqtk_1.4-2_i386.buildinfo 1ce2861b003682edbaf132f6e93641956f35bab6 38752 seqtk_1.4-2_i386.deb Checksums-Sha256: 1210ca552b6a231bd0207c6e6094f8f6e37646b3d369c92815ef80edcd205a60 76008 seqtk-dbgsym_1.4-2_i386.deb 565759cb8ab2e9a212bc44312dc52fa1092161b06d0501a6f750d32d96c234b1 4947 seqtk_1.4-2_i386.buildinfo e6273bf6296c887f85410b16234961b2c1b2b5c8449affce387300e37defbe3e 38752 seqtk_1.4-2_i386.deb Files: a710a7d8d16d2bbd03f36ad4c4ac88e7 76008 debug optional seqtk-dbgsym_1.4-2_i386.deb abd2536a8f01761dd189b776018f548c 4947 science optional seqtk_1.4-2_i386.buildinfo 5e8178d60d344bc1654876666daefafc 38752 science optional seqtk_1.4-2_i386.deb Fri Feb 7 02:45:23 UTC 2025 I: diffoscope 287 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_2-56496.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3olqROzC/seqtk_1.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3olqROzC/seqtk_1.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3olqROzC/seqtk_1.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3olqROzC/b1/seqtk_1.4-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.3olqROzC/b2/seqtk_1.4-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.005s) 0.005s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 320ms CPU time consumed: 319ms Fri Feb 7 02:45:24 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists. Fri Feb 7 02:45:24 UTC 2025 I: seqtk from trixie built successfully and reproducibly on i386. Fri Feb 7 02:45:26 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Feb 7 02:45:26 UTC 2025 I: Submitting 8.0K b1/seqtk_1.4-2_i386.buildinfo.asc Fri Feb 7 02:45:26 UTC 2025 I: Submitting 8.0K b2/seqtk_1.4-2_i386.buildinfo.asc Fri Feb 7 02:45:28 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Feb 7 02:45:28 UTC 2025 I: Done submitting .buildinfo files. Fri Feb 7 02:45:28 UTC 2025 I: Removing signed seqtk_1.4-2_i386.buildinfo.asc files: removed './b1/seqtk_1.4-2_i386.buildinfo.asc' removed './b2/seqtk_1.4-2_i386.buildinfo.asc'