Sat Mar 15 11:32:19 UTC 2025 I: starting to build circlator/unstable/amd64 on jenkins on '2025-03-15 11:32' Sat Mar 15 11:32:19 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_26/34445/console.log Sat Mar 15 11:32:19 UTC 2025 I: Downloading source for unstable/circlator=1.5.6-13 --2025-03-15 11:32:19-- http://deb.debian.org/debian/pool/main/c/circlator/circlator_1.5.6-13.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2325 (2.3K) [text/prs.lines.tag] Saving to: ‘circlator_1.5.6-13.dsc’ 0K .. 100% 364M=0s 2025-03-15 11:32:19 (364 MB/s) - ‘circlator_1.5.6-13.dsc’ saved [2325/2325] Sat Mar 15 11:32:19 UTC 2025 I: circlator_1.5.6-13.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: circlator Binary: circlator Architecture: all Version: 1.5.6-13 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://sanger-pathogens.github.io/circlator/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/circlator Vcs-Git: https://salsa.debian.org/med-team/circlator.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pkg-resources, python3-pytest, spades Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-packaging, python3-openpyxl, python3-jdcal, python3-pysam, python3-pymummer, python3-pytest , fastaq , spades , bwa , prodigal , canu Package-List: circlator deb science optional arch=all Checksums-Sha1: 4b152777c1f475f34867b6014f04efc69d467eb2 5724413 circlator_1.5.6.orig.tar.gz 9d63e2c7ca2850ecf4b4963cdca71996833f6e3c 6744 circlator_1.5.6-13.debian.tar.xz Checksums-Sha256: 1c6ea4f3dfd726cf798b7b3a23e1cb02ade0471597c412b119de8be73db804b6 5724413 circlator_1.5.6.orig.tar.gz 5d465147d90dea43a96bc7ba2a8e18f82b5bfa3a2c6b686df6f316c6e235e3c1 6744 circlator_1.5.6-13.debian.tar.xz Files: dbb1ab9bf8d9834fa9106dc99e85d76e 5724413 circlator_1.5.6.orig.tar.gz a16a6ab5b122a532c13f3d0725bbec5f 6744 circlator_1.5.6-13.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmeyYNkRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrUpBAAqD94OHn+ByNcYa4sJAoCOe+MrsZyEznx eSnCwLO93imNE8FqVOXw3HKSyXJEWepPJsSH5iCS/jv3lxYc6w48r/rK6mTAZFo7 FZ6RwRyYmnBH+1+CZrdBSk8t2DT4UFhrqkgFPd2JsBoDAswXxo4CyPKGzE+ewLgt JwaDhyEkKq6Y75h2AIGNU0SU7oG55RTGKKTS7kcxOIlsqV7gcEzckdN8A4+SaZdN OsETNr5KyGxU85Npyk8WRJk3K8rzR2jUs79cdxwB8P6uCGEc0PiONR8g1diXiM5I 43eTeGGbALjEwOSBxu+kHjTHDAAWV+V5to00RSarECCIKU3jUUaN6U1aKyLNWFnP 6Rnck6+PE3DWHAsJnYWdEUdKRl7V5bjbz19n4rPqetHERUah35vDp4vgA1Y1VGAZ I0NOfYiy0HRxSZuxInoeFBY9E8FhhyCUZckg/0QvnZCd0WY+g81QFahqaWUQnNcu wPglRFURCfljRLQfLWuf/ByFfh1R0pPJiBJ/GUvnqbeVeRmm9nhUrtsGvoDMrlnp Uh7j10NL+CDiXLansE3NIuQzUl96MCDDJRwDNlYgiGDOx29oR+vfY56oLDg/yW9g cDmj17AL1nzujaGAq8ceL1BxHvtFKN0mO5FGgnr8zP0PKDFe2+zl8aBQcR7XGIm6 RZXexKCtpmE= =396u -----END PGP SIGNATURE----- Sat Mar 15 11:32:19 UTC 2025 I: Checking whether the package is not for us Sat Mar 15 11:32:19 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sat Mar 15 11:32:19 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sat Mar 15 11:33:43 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 17 05:55:21 -12 2026 I: pbuilder-time-stamp: 1776448521 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [circlator_1.5.6-13.dsc] I: copying [./circlator_1.5.6.orig.tar.gz] I: copying [./circlator_1.5.6-13.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./circlator_1.5.6-13.dsc: unsupported subcommand dpkg-source: info: extracting circlator in circlator-1.5.6 dpkg-source: info: unpacking circlator_1.5.6.orig.tar.gz dpkg-source: info: unpacking circlator_1.5.6-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_canu_detection.patch dpkg-source: info: applying switch-to-pytest.patch dpkg-source: info: applying split_canu_tests dpkg-source: info: applying remove-distutils.patch dpkg-source: info: applying python3.12-syntax.patch dpkg-source: info: applying remove-undeclared-pkg-resources.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2341885/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='884e47fe0e794f11bca0b596a548684b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2341885' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wSshtkvF/pbuilderrc_VeA5 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wSshtkvF/b1 --logfile b1/build.log circlator_1.5.6-13.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2341885/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-packaging, python3-openpyxl, python3-jdcal, python3-pysam, python3-pymummer, python3-pytest, fastaq, spades, bwa, prodigal, canu dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19785 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-openpyxl; however: Package python3-openpyxl is not installed. pbuilder-satisfydepends-dummy depends on python3-jdcal; however: Package python3-jdcal is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pymummer; however: Package python3-pymummer is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on fastaq; however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on spades; however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on prodigal; however: Package prodigal is not installed. pbuilder-satisfydepends-dummy depends on canu; however: Package canu is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: aglfn{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bamtools{a} binfmt-support{a} bsdextrautils{a} bwa{a} ca-certificates{a} ca-certificates-java{a} canu{a} debhelper{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gawk{a} gettext{a} gettext-base{a} gnuplot-data{a} gnuplot-nox{a} groff-base{a} intltool-debian{a} jaligner{a} jarwrapper{a} java-common{a} libabsl20240722{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libatinject-jsr330-api-java{a} libavif16{a} libbamtools2.5.2{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcommons-codec-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-parent-java{a} libcurl3t64-gnutls{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} liberror-prone-java{a} libexpat1{a} libfastutil-java{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfilesys-df-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgd3{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libguava-java{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhts3t64{a} libhtscodecs2{a} libicu76{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjsoncpp26{a} libjsr305-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnlopt0{a} libnspr4{a} libnss3{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsigsegv2{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libssw-java{a} libssw0{a} libsvtav1enc2{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libyaml-0-2{a} libyuv0{a} m4{a} man-db{a} media-types{a} mhap{a} mummer{a} netbase{a} openjdk-21-jre-headless{a} openssl{a} po-debconf{a} procps{a} prodigal{a} python3{a} python3-all{a} python3-autocommand{a} python3-et-xmlfile{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jdcal{a} python3-joblib{a} python3-lxml{a} python3-minimal{a} python3-more-itertools{a} python3-openpyxl{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pymummer{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} spades{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation groff krb5-locales libarchive-cpio-perl libasound2t64 libcups2t64 libglib2.0-data libgpg-error-l10n libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libldap-common libltdl-dev libmail-sendmail-perl liboss4-salsa-asound2 libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-numpy python3-pil python3-psutil python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 200 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After unpacking 559 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 binfmt-support amd64 2.2.2-7 [64.3 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libsigsegv2 amd64 2.14-1+b2 [34.4 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 gawk amd64 1:5.2.1-2+b1 [674 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-2 [337 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-2 [109 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-2 [43.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6+b1 [161 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 bamtools amd64 2.5.2+dfsg-6+b1 [207 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 bwa amd64 0.7.18-1 [212 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libfilesys-df-perl amd64 0.92-7+b4 [11.9 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 java-common all 0.76 [6776 B] Get: 46 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libnss3 amd64 2:3.109-1 [1393 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libpcsclite1 amd64 2.3.1-1 [56.0 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 openjdk-21-jre-headless amd64 21.0.6+7-1 [41.7 MB] Get: 52 http://deb.debian.org/debian unstable/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Get: 53 http://deb.debian.org/debian unstable/main amd64 fastjar amd64 2:0.98-7 [80.1 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 jarwrapper all 0.80 [9692 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 33-2 [5852 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libcommons-codec-java all 1.18.0-1 [304 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libcommons-io-java all 2.18.0-1 [509 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libfastutil-java all 8.5.15+dfsg-1 [20.0 MB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libatinject-jsr330-api-java all 1.0+ds1-6 [5112 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libjsr305-java all 0.1~+svn49-12 [26.6 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 jaligner all 1.0+dfsg-11 [133 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libssw-java amd64 1.1-15+b2 [18.6 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 mhap all 2.1.3+dfsg-3 [160 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 gnuplot-data all 6.0.2+dfsg1-1 [72.4 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.1 [318 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.1 [391 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1 [537 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.12.0-1 [1870 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-1.5 [492 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-9+b1 [946 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [174 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.2.0-1 [133 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.19.7-1 [11.7 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b3 [189 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.19.7-1 [15.3 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.19.7-1 [520 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.0-2 [1513 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.7-1+b2 [147 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2.1 [463 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.2-1 [226 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [55.4 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [35.8 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 gnuplot-nox amd64 6.0.2+dfsg1-1 [922 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 canu amd64 2.2+dfsg-5 [1413 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 131 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250308 [115 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 149 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-3 [365 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.21-1 [667 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 fastaq all 3.17.0-9 [47.8 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libnlopt0 amd64 2.7.1-6+b4 [178 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libspoa7.0.0 amd64 4.1.4-2+b1 [74.1 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 prodigal amd64 1:2.6.3-6 [508 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.2-2 [1044 B] Get: 177 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-et-xmlfile all 2.0.0-1 [78.2 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 184 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-jdcal all 1.0-1.3 [7904 B] Get: 191 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.4.2-3 [216 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.1-1+b1 [1288 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-openpyxl all 3.1.5+dfsg-1 [166 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-pymummer all 0.11.0-5 [18.1 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.5-1 [250 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 spades amd64 4.0.0+dfsg1-2 [8071 kB] Fetched 143 MB in 12s (11.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19785 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../binfmt-support_2.2.2-7_amd64.deb ... Unpacking binfmt-support (2.2.2-7) ... Selecting previously unselected package readline-common. 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Setting up readline-common (8.2-6) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libsigsegv2:amd64 (2.14-1+b2) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2+b1_amd64.deb ... Unpacking gawk (1:5.2.1-2+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. 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Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libnspr4:amd64 (2:4.36-1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libapache-pom-java (33-2) ... Setting up libncurses6:amd64 (6.5+20250216-2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-6) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libspoa7.0.0:amd64 (4.1.4-2+b1) ... Setting up libpng16-16t64:amd64 (1.6.47-1.1) ... Setting up autopoint (0.23.1-1) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libpcsclite1:amd64 (2.3.1-1) ... 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Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libde265-0:amd64 (1.0.15-1+b3) ... Setting up openssl (3.4.1-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libyuv0:amd64 (0.0.1904.20250204-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libpython3-stdlib:amd64 (3.13.2-2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gnuplot-data (6.0.2+dfsg1-1) ... Setting up libavif16:amd64 (1.2.0-1) ... Setting up gettext (0.23.1-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.5.4-4) ... Setting up python3.13 (3.13.2-2) ... Setting up fontconfig-config (2.15.0-2.1) ... Setting up libcommons-parent-java (56-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up python3 (3.13.2-2) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libnss3:amd64 (2:3.109-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.84.0-2) ... No schema files found: doing nothing. Setting up python3-packaging (24.2-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up python3-et-xmlfile (2.0.0-1) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libfontconfig1:amd64 (2.15.0-2.1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.18.0-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up dh-python (6.20250308) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up fontconfig (2.15.0-2.1) ... Regenerating fonts cache... done. Setting up python3-jaraco.functools (4.1.0-1) ... Setting up openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-jdcal (1.0-1.3) ... Setting up python3-joblib (1.4.2-3) ... Setting up libcommons-io-java (2.18.0-1) ... Setting up python3-pytest (8.3.5-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:amd64 (1.56.2-1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3-all (3.13.2-2) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-lxml:amd64 (5.3.1-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-3) ... Setting up debhelper (13.24.1) ... Setting up python3-openpyxl (3.1.5+dfsg-1) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up samtools (1.21-1) ... Setting up spades (4.0.0+dfsg1-2) ... Setting up fastaq (3.17.0-9) ... Setting up python3-pymummer (0.11.0-5) ... Setting up libheif-plugin-dav1d:amd64 (1.19.7-1) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libheif1:amd64 (1.19.7-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libgd3:amd64 (2.3.3-12+b1) ... Setting up gnuplot-nox (6.0.2+dfsg1-1) ... update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up libheif-plugin-libde265:amd64 (1.19.7-1) ... Processing triggers for libc-bin (2.41-5) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up default-jre-headless (2:1.21-76) ... Setting up jaligner (1.0+dfsg-11) ... Setting up mhap (2.1.3+dfsg-3) ... Setting up canu (2.2+dfsg-5) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/circlator-1.5.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../circlator_1.5.6-13_source.changes dpkg-buildpackage: info: source package circlator dpkg-buildpackage: info: source version 1.5.6-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/common.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/__init__.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/mapping.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/start_fixer.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/program.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/assembly.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/merge.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/dnaa.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/bam2reads.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/all.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/test.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/minimus2.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/mapreads.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/test_contigs.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/dnaA.fasta -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data running build_scripts creating build/scripts-3.13 copying and adjusting scripts/circlator -> build/scripts-3.13 changing mode of build/scripts-3.13/circlator from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: cp -av circlator/tests /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/ 'circlator/tests' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests' 'circlator/tests/assembly_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/assembly_test.py' 'circlator/tests/bamfilter_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/bamfilter_test.py' 'circlator/tests/clean_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/clean_test.py' 'circlator/tests/common_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/common_test.py' 'circlator/tests/data' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data' 'circlator/tests/data/assemble_test.dummy_reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test.dummy_reads.fa' 'circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa' 'circlator/tests/data/assemble_test_rename_canu_contigs.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.in.fa' 'circlator/tests/data/assembly_test_circular_contigs_from_canu.gfa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_canu.gfa' 'circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg' 'circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths' 'circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg' 'circlator/tests/data/assembly_test_circular_contigs_only_contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_only_contigs.fasta' 'circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1' 'circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg' 'circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.fasta' 'circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths' 'circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1' 'circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fasta' 'circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fastg' 'circlator/tests/data/assembly_test_get_contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_get_contigs.fasta' 'circlator/tests/data/assembly_test_init_contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_contigs.fasta' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.fasta' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.paths' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.paths' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths/contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths/contigs.fasta' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/assembly_graph.fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/assembly_graph.fastg' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/contigs.fasta' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/assembly_graph.fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/assembly_graph.fastg' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.fasta' 'circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.paths' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.paths' 'circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg' 'circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg/contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg/contigs.fasta' 'circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok' 'circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fasta' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fasta' 'circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fastg' 'circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths' 'circlator/tests/data/bamfilter_test_all_reads_from_contig.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam' 'circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai' 'circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fa' 'circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fq' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fq' 'circlator/tests/data/bamfilter_test_break_reads.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.bam' 'circlator/tests/data/bamfilter_test_break_reads.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.bam.bai' 'circlator/tests/data/bamfilter_test_break_reads.broken_reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fa' 'circlator/tests/data/bamfilter_test_break_reads.broken_reads.fq' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fq' 'circlator/tests/data/bamfilter_test_check_contigs_to_use.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam' 'circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai' 'circlator/tests/data/bamfilter_test_exclude_region.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.bam' 'circlator/tests/data/bamfilter_test_exclude_region.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.bam.bai' 'circlator/tests/data/bamfilter_test_exclude_region.reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fa' 'circlator/tests/data/bamfilter_test_exclude_region.reads.fq' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fq' 'circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam' 'circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai' 'circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fa' 'circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fq' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fq' 'circlator/tests/data/bamfilter_test_get_contigs_to_use.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.bam' 'circlator/tests/data/bamfilter_test_get_contigs_to_use.infile' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.infile' 'circlator/tests/data/bamfilter_test_get_ref_lengths.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_ref_lengths.bam' 'circlator/tests/data/bamfilter_test_get_region_end.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.bam' 'circlator/tests/data/bamfilter_test_get_region_end.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.bam.bai' 'circlator/tests/data/bamfilter_test_get_region_end.reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.reads.fa' 'circlator/tests/data/bamfilter_test_get_region_start.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.bam' 'circlator/tests/data/bamfilter_test_get_region_start.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.bam.bai' 'circlator/tests/data/bamfilter_test_get_region_start.reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.reads.fa' 'circlator/tests/data/bamfilter_test_run.make_reads_and_bam.sh' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.make_reads_and_bam.sh' 'circlator/tests/data/bamfilter_test_run.reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.reads.fa' 'circlator/tests/data/bamfilter_test_run.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.ref.fa' 'circlator/tests/data/bamfilter_test_run.ref.fa.fai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.ref.fa.fai' 'circlator/tests/data/bamfilter_test_run_discard_unmapped.out.reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_discard_unmapped.out.reads.fa' 'circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fa' 'circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fq' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fq' 'circlator/tests/data/bamfilter_test_run_no_qual.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_no_qual.bam' 'circlator/tests/data/bamfilter_test_run_no_qual.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_no_qual.bam.bai' 'circlator/tests/data/bamfilter_test_run_with_qual.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_with_qual.bam' 'circlator/tests/data/bamfilter_test_run_with_qual.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_with_qual.bam.bai' 'circlator/tests/data/clean_test_clean_contigs.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_clean_contigs.in.fa' 'circlator/tests/data/clean_test_clean_contigs.out.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_clean_contigs.out.fa' 'circlator/tests/data/clean_test_contigs_to_keep' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_contigs_to_keep' 'circlator/tests/data/clean_test_load_nucmer_hits.coords' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_load_nucmer_hits.coords' 'circlator/tests/data/clean_test_remove_small_contigs.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_remove_small_contigs.in.fa' 'circlator/tests/data/clean_test_remove_small_contigs.out.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_remove_small_contigs.out.fa' 'circlator/tests/data/clean_test_write_log.log' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_write_log.log' 'circlator/tests/data/common_test_file_exists' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/common_test_file_exists' 'circlator/tests/data/mapping_test_aligned_read_to_read.bam' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam' 'circlator/tests/data/mapping_test_aligned_read_to_read.bam.bai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam.bai' 'circlator/tests/data/mapping_test_aligned_read_to_read.reads.fq' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.reads.fq' 'circlator/tests/data/mapping_test_aligned_read_to_read.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.ref.fa' 'circlator/tests/data/mapping_test_bwa_index.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_index.fa' 'circlator/tests/data/mapping_test_bwa_mem.reads.fq' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.reads.fq' 'circlator/tests/data/mapping_test_bwa_mem.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa' 'circlator/tests/data/mapping_test_bwa_mem.ref.fa.fai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa.fai' 'circlator/tests/data/merge_test_contigs_dict_to_file.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_contigs_dict_to_file.fa' 'circlator/tests/data/merge_test_get_spades_circular_nodes.fastg' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_get_spades_circular_nodes.fastg' 'circlator/tests/data/merge_test_hits_to_new_seq.1.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.expected.fa' 'circlator/tests/data/merge_test_hits_to_new_seq.1.reassembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.reassembly.fa' 'circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa' 'circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa' 'circlator/tests/data/merge_test_hits_to_new_seq.2.reassembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.reassembly.fa' 'circlator/tests/data/merge_test_hits_to_new_seq.2.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.ref.fa' 'circlator/tests/data/merge_test_index_fasta.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_index_fasta.fa' 'circlator/tests/data/merge_test_index_fasta.fa.fai' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_index_fasta.fa.fai' 'circlator/tests/data/merge_test_load_nucmer_hits.coords' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_load_nucmer_hits.coords' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.expected.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.expected.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.reassembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.reassembly.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.expected.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.reassembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.reassembly.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.expected.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.reassembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.reassembly.fa' 'circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa' 'circlator/tests/data/merge_test_merge_pair.test1.coords' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test1.coords' 'circlator/tests/data/merge_test_merge_pair.test2.coords' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test2.coords' 'circlator/tests/data/merge_test_merge_pair.test3.coords' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test3.coords' 'circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa' 'circlator/tests/data/merge_test_nucmer_hits_to_potential_join.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.ref.fa' 'circlator/tests/data/merge_test_original.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_original.fa' 'circlator/tests/data/merge_test_reassembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_reassembly.fa' 'circlator/tests/data/merge_test_write_act_files.coords' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.coords' 'circlator/tests/data/merge_test_write_act_files.expected.crunch' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.expected.crunch' 'circlator/tests/data/merge_test_write_act_files.expected.sh' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.expected.sh' 'circlator/tests/data/merge_test_write_act_files.qry.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.qry.fa' 'circlator/tests/data/merge_test_write_act_files.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.ref.fa' 'circlator/tests/data/minimus2_test.dummy_input_assembly.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test.dummy_input_assembly.fa' 'circlator/tests/data/minimus2_test.write_split_contig.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test.write_split_contig.fa' 'circlator/tests/data/minimus2_test_run_initial_merge.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_initial_merge.expected.fa' 'circlator/tests/data/minimus2_test_run_initial_merge.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_initial_merge.in.fa' 'circlator/tests/data/minimus2_test_run_minimus2.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2.in.fa' 'circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.expected.fa' 'circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.in.fa' 'circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.expected.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.expected.fa' 'circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa' 'circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.in.fa' 'circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa' 'circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa' 'circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa' 'circlator/tests/data/start_fixer_init_contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_contigs.fa' 'circlator/tests/data/start_fixer_init_dnaA.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_dnaA.fa' 'circlator/tests/data/start_fixer_init_ignore_ids' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_ignore_ids' 'circlator/tests/data/start_fixer_max_length_from_fasta_file.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_max_length_from_fasta_file.fa' 'circlator/tests/data/start_fixer_rearrange_contigs.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.fa' 'circlator/tests/data/start_fixer_rearrange_contigs.expect.log' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.log' 'circlator/tests/data/start_fixer_rearrange_contigs.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.in.fa' 'circlator/tests/data/start_fixer_rearrange_contigs.refs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.refs.fa' 'circlator/tests/data/start_fixer_run_bit_of_everything.ctg.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ctg.fa' 'circlator/tests/data/start_fixer_run_bit_of_everything.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.expect.fa' 'circlator/tests/data/start_fixer_run_bit_of_everything.ignore' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ignore' 'circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa' 'circlator/tests/data/start_fixer_run_ignore_all.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.expect.fa' 'circlator/tests/data/start_fixer_run_ignore_all.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.fa' 'circlator/tests/data/start_fixer_run_ignore_all.to_ignore' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.to_ignore' 'circlator/tests/data/start_fixer_run_none_for_prodigal.ctg.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ctg.fa' 'circlator/tests/data/start_fixer_run_none_for_prodigal.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.expect.fa' 'circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa' 'circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.in.fa' 'circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.fa' 'circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.ignore.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.ignore.fa' 'circlator/tests/data/start_fixer_write_renamed_contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_renamed_contigs.fa' 'circlator/tests/dnaa_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/dnaa_test.py' 'circlator/tests/external_progs_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/external_progs_test.py' 'circlator/tests/mapping_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/mapping_test.py' 'circlator/tests/merge_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/merge_test.py' 'circlator/tests/minimus2_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/minimus2_test.py' 'circlator/tests/start_fixer_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/start_fixer_test.py' 'circlator/tests/assemble_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/assemble_test.py' I: pybuild base:311: cd /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build; python3.13 -m pytest circlator/tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/circlator-1.5.6 plugins: typeguard-4.4.2 collected 115 items circlator/tests/assemble_test.py .... [ 3%] circlator/tests/assembly_test.py ............. [ 14%] circlator/tests/bamfilter_test.py ............ [ 25%] circlator/tests/clean_test.py ............... [ 38%] circlator/tests/common_test.py . [ 39%] circlator/tests/dnaa_test.py ...... [ 44%] circlator/tests/external_progs_test.py ....... [ 50%] circlator/tests/mapping_test.py .... [ 53%] circlator/tests/merge_test.py .................................... [ 85%] circlator/tests/minimus2_test.py ssssss [ 90%] circlator/tests/start_fixer_test.py ........... [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'} __version__ = Distribution().from_name('pyfastaq').version -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 109 passed, 6 skipped, 1 warning in 1.61s =================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/circlator/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/circlator-1.5.6/debian/circlator /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/assemble.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/common.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/assembly_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/clean_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/common_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/external_progs_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/assemble_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/dnaa_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/minimus2_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/mapping_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/bamfilter_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/assemble_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/assembly_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/dnaa_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/clean_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/minimus2_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/start_fixer_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/common_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/merge_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/bamfilter_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/mapping_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/external_progs_test.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/start_fixer_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/merge_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_no_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test.dummy_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/common_test_file_exists -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.expected.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_remove_small_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_canu.gfa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test2.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_clean_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.infile -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_index_fasta.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_max_length_from_fasta_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_initial_merge.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.expected.crunch -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_discard_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_write_log.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_no_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_initial_merge.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ignore -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_ref_lengths.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_contigs_to_keep -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_original.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_index.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.ignore.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.make_reads_and_bam.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_remove_small_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_contigs_dict_to_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_get_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_with_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_get_spades_circular_nodes.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test.write_split_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_ignore_ids -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_only_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test3.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_index_fasta.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_dnaA.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_clean_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_with_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test.dummy_input_assembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_renamed_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.qry.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.to_ignore -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test1.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/bam2reads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/all.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/mapreads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/assemble.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/fixstart.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/all.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/bam2reads.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/minimus2.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/merge.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/clean.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/get_dnaa.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/mapreads.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/progcheck.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/mapping.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/start_fixer.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/program.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/assembly.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/assemble.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/start_fixer.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/bamfilter.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/minimus2.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/merge.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/clean.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/dnaa.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/program.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/dnaA.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/assemble.py to assemble.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/clean.py to clean.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/assembly_test.py to assembly_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/clean_test.py to clean_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/common_test.py to common_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/external_progs_test.py to external_progs_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/assemble_test.py to assemble_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/dnaa_test.py to dnaa_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/minimus2_test.py to minimus2_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/mapping_test.py to mapping_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/bamfilter_test.py to bamfilter_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/start_fixer_test.py to start_fixer_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/merge_test.py to merge_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/assemble.py to assemble.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/clean.py to clean.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/progcheck.py to progcheck.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/bam2reads.py to bam2reads.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/all.py to all.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/get_dnaa.py to get_dnaa.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/minimus2.py to minimus2.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/merge.py to merge.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/mapreads.py to mapreads.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/fixstart.py to fixstart.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/versions.py to versions.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/external_progs.py to external_progs.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/bamfilter.py to bamfilter.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/mapping.py to mapping.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/start_fixer.py to start_fixer.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/minimus2.py to minimus2.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/program.py to program.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/assembly.py to assembly.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/merge.py to merge.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/dnaa.py to dnaa.cpython-313.pyc running install_egg_info running egg_info creating circlator.egg-info writing circlator.egg-info/PKG-INFO writing dependency_links to circlator.egg-info/dependency_links.txt writing requirements to circlator.egg-info/requires.txt writing top-level names to circlator.egg-info/top_level.txt writing manifest file 'circlator.egg-info/SOURCES.txt' reading manifest file 'circlator.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'circlator.egg-info/SOURCES.txt' Copying circlator.egg-info to /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator-1.5.5.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/bin copying build/scripts-3.13/circlator -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/bin changing mode of /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/bin/circlator to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/circlator-1.5.6' dh_installexamples cd debian/circlator/usr/share/doc/circlator/examples && tar caf data.tar.xz data --owner=0 --group=0 --numeric-owner --sort=name --mode=a+rX,og-w && rm -rf data make[1]: Leaving directory '/build/reproducible-path/circlator-1.5.6' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'circlator' in '../circlator_1.5.6-13_all.deb'. dpkg-genbuildinfo --build=binary -O../circlator_1.5.6-13_amd64.buildinfo dpkg-genchanges --build=binary -O../circlator_1.5.6-13_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2341885 and its subdirectories I: Current time: Fri Apr 17 05:56:43 -12 2026 I: pbuilder-time-stamp: 1776448603 Sat Mar 15 11:33:44 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sat Mar 15 11:33:44 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sat Mar 15 11:38:00 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sat Mar 15 11:38:00 UTC 2025 I: circlator_1.5.6-13_amd64.changes: Format: 1.8 Date: Sun, 16 Feb 2025 23:01:48 +0100 Source: circlator Binary: circlator Architecture: all Version: 1.5.6-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: circlator - circularize genome assemblies Changes: circlator (1.5.6-13) unstable; urgency=medium . * Team Upload. * Patch-out undeclared use of pkg_resources (but autopkgtest run on unpatched code ...?) * "spades" dependency is amd64 only: disable Salsa i386 build . [ Andreas Tille ] * add DEP3 headers Checksums-Sha1: ad38d874913a962cd49d1cb7622e5b584209c527 4605368 circlator_1.5.6-13_all.deb 509af13e9f7e8847abebe360ea387c6deaf678b9 9809 circlator_1.5.6-13_amd64.buildinfo Checksums-Sha256: c9dc51e45273b2297d99e42554296259e1452a46369c54df812e9b0bfcf8b478 4605368 circlator_1.5.6-13_all.deb ae0b14a9d2296814362e5455505bfa65405d988780593c05317bac648ab1fbc1 9809 circlator_1.5.6-13_amd64.buildinfo Files: ffa96a064617ea1c06e57bd52e54575a 4605368 science optional circlator_1.5.6-13_all.deb b8d80eaa1d105077200bb9e0fd4b12c7 9809 science optional circlator_1.5.6-13_amd64.buildinfo Sat Mar 15 11:38:01 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_26-34445.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wSshtkvF/circlator_1.5.6-13.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wSshtkvF/circlator_1.5.6-13.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wSshtkvF/circlator_1.5.6-13.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wSshtkvF/b1/circlator_1.5.6-13_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wSshtkvF/b2/circlator_1.5.6-13_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 233ms CPU time consumed: 234ms Sat Mar 15 11:38:02 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sat Mar 15 11:38:02 UTC 2025 I: circlator from unstable built successfully and reproducibly on amd64. Sat Mar 15 11:38:03 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Mar 15 11:38:03 UTC 2025 I: Submitting 12K b1/circlator_1.5.6-13_amd64.buildinfo.asc Sat Mar 15 11:38:04 UTC 2025 I: Submitting 12K b2/circlator_1.5.6-13_amd64.buildinfo.asc Sat Mar 15 11:38:05 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Mar 15 11:38:05 UTC 2025 I: Done submitting .buildinfo files. Sat Mar 15 11:38:05 UTC 2025 I: Removing signed circlator_1.5.6-13_amd64.buildinfo.asc files: removed './b1/circlator_1.5.6-13_amd64.buildinfo.asc' removed './b2/circlator_1.5.6-13_amd64.buildinfo.asc'