Thu Jul 31 10:57:21 UTC 2025 I: starting to build emmax/unstable/amd64 on jenkins on '2025-07-31 10:57' Thu Jul 31 10:57:21 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_20/62498/console.log Thu Jul 31 10:57:21 UTC 2025 I: Downloading source for unstable/emmax=0~beta.20100307-6 --2025-07-31 10:57:21-- http://deb.debian.org/debian/pool/main/e/emmax/emmax_0%7ebeta.20100307-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2258 (2.2K) [text/prs.lines.tag] Saving to: ‘emmax_0~beta.20100307-6.dsc’ 0K .. 100% 295M=0s 2025-07-31 10:57:21 (295 MB/s) - ‘emmax_0~beta.20100307-6.dsc’ saved [2258/2258] Thu Jul 31 10:57:21 UTC 2025 I: emmax_0~beta.20100307-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: emmax Binary: emmax Architecture: any Version: 0~beta.20100307-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://genome.sph.umich.edu/wiki/EMMAX Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/emmax Vcs-Git: https://salsa.debian.org/med-team/emmax.git Testsuite: autopkgtest Testsuite-Triggers: plink Build-Depends: debhelper-compat (= 13), libblas-dev | libopenblas-dev | libblas.so, liblapacke-dev, zlib1g-dev Package-List: emmax deb science optional arch=any Checksums-Sha1: 47537b608e41f1e938c56cdfdff7c80c9d618d5a 18575 emmax_0~beta.20100307.orig.tar.gz f695e9aa240d36213d40ff389b9f85780025dcc4 9100 emmax_0~beta.20100307-6.debian.tar.xz Checksums-Sha256: 79670917a0ac74ff1899fb27361e2e07b0f3a7911a9d9c6e0c18cf066b8987ea 18575 emmax_0~beta.20100307.orig.tar.gz 117580c4363238815bf0d5760598ae4ca06f6fe254f91ee5e3be3f41cc1db780 9100 emmax_0~beta.20100307-6.debian.tar.xz Files: 8da46b2c678fd087b8500e48816a3461 18575 emmax_0~beta.20100307.orig.tar.gz da7b69fc32a5c3f181b22b8ce685315b 9100 emmax_0~beta.20100307-6.debian.tar.xz Dgit: c16380514bfc7849e7068d1fe7a2b3959afe2706 debian archive/debian/0_beta.20100307-6 https://git.dgit.debian.org/emmax -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmhznf4UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo2+w/+LT6LufuH+fQMuAkGc1VUCVLKOwoa MOFcN1dU/ETCpAt9zY8kVbDwdOFiQxea9+8ENfYaoWKM9+PTr006RFmxb36efpDi NdPv05xEv+rj1TSo8ICZ8tcq2UdKhkFn7WTcaAnGvF50vAtlWU+vxsPGCVF2sFJ4 umvXuQ9K/QcagpjULZDRQ+ZwpEQ+IoRxLQGBU6uHsXRu0SUVgkSjCD1JvCS2ttsh 1f3HgHBaBOUTWsH0KZ15hT4a2DCc8NuBA5e48taKUieLEGpbtvzMWq8lFvhCeslT 5XYVu41F93FgBukRV0Hh+lCK9VLbZ3flOWhVC9mIQ9df+gBIqSTjtaoxwhDLDNpL 91aHuAERyWcMg9w1NYRRbsGnEp5KM5fAEiV8gSHubh9nSp0hW0iF87f/wRNuj48f 7fWjhYfJ1cjf+ABFO5kAOIx6O8ix3zCIALn2P43BOn6YaGDQ0Wog7nympfXpFxhr Sr15JVpTy9IXwmbHma3Eb94UrbliX33+yFfes9MUixlbIOnYczqST9wzAJjJwjB2 iRANIlm8YjcYkotyy/yDnZLi4Jqyl/PJUisivNeUAv7BD1mlJeXmOwE5slM/9Wgw 5H4IUQnvMhV2ptwtWQwgHdEKZWm/tja6LnTlzBJT+GX1FPbY2qLA3OssrR1tKNnb E+ellLR0g6eyVuc= =lLEr -----END PGP SIGNATURE----- Thu Jul 31 10:57:21 UTC 2025 I: Checking whether the package is not for us Thu Jul 31 10:57:21 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Jul 31 10:57:21 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Jul 31 10:57:53 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 2 05:20:22 -12 2026 I: pbuilder-time-stamp: 1788369622 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [emmax_0~beta.20100307-6.dsc] I: copying [./emmax_0~beta.20100307.orig.tar.gz] I: copying [./emmax_0~beta.20100307-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./emmax_0~beta.20100307-6.dsc: no acceptable signature found dpkg-source: info: extracting emmax in emmax-0~beta.20100307 dpkg-source: info: unpacking emmax_0~beta.20100307.orig.tar.gz dpkg-source: info: unpacking emmax_0~beta.20100307-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dynamic.patch dpkg-source: info: applying aborts.patch dpkg-source: info: applying install.patch dpkg-source: info: applying clean.patch dpkg-source: info: applying logfile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix-autopkgtest.patch dpkg-source: info: applying lapacke.patch dpkg-source: info: applying syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2950813/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='92bc8e29b3c445e592d9f0fe3ccc056d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2950813' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EUvgjBwL/pbuilderrc_NFXa --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EUvgjBwL/b1 --logfile b1/build.log emmax_0~beta.20100307-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2950813/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev | libopenblas-dev | libblas.so, liblapacke-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libopenblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libopenblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on liblapacke-dev; however: Package liblapacke-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack-dev{a} liblapack3{a} liblapacke{a} liblapacke-dev{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtmglib-dev{a} libtmglib3{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 21.8 MB of archives. After unpacking 96.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-4 [160 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-4 [170 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-4 [2447 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-4 [4991 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libtmglib3 amd64 3.12.1-4 [125 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 liblapacke amd64 3.12.1-4 [381 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libtmglib-dev amd64 3.12.1-4 [128 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 liblapacke-dev amd64 3.12.1-4 [381 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 21.8 MB in 3s (6791 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../29-libblas3_3.12.1-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-4) ... Selecting previously unselected package libblas-dev:amd64. Preparing to unpack .../30-libblas-dev_3.12.1-4_amd64.deb ... Unpacking libblas-dev:amd64 (3.12.1-4) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../31-libgfortran5_14.2.0-19_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-19) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../32-liblapack3_3.12.1-4_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-4) ... Selecting previously unselected package liblapack-dev:amd64. Preparing to unpack .../33-liblapack-dev_3.12.1-4_amd64.deb ... Unpacking liblapack-dev:amd64 (3.12.1-4) ... Selecting previously unselected package libtmglib3:amd64. Preparing to unpack .../34-libtmglib3_3.12.1-4_amd64.deb ... Unpacking libtmglib3:amd64 (3.12.1-4) ... Selecting previously unselected package liblapacke:amd64. Preparing to unpack .../35-liblapacke_3.12.1-4_amd64.deb ... Unpacking liblapacke:amd64 (3.12.1-4) ... Selecting previously unselected package libtmglib-dev:amd64. Preparing to unpack .../36-libtmglib-dev_3.12.1-4_amd64.deb ... Unpacking libtmglib-dev:amd64 (3.12.1-4) ... Selecting previously unselected package liblapacke-dev:amd64. Preparing to unpack .../37-liblapacke-dev_3.12.1-4_amd64.deb ... Unpacking liblapacke-dev:amd64 (3.12.1-4) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../38-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libblas-dev:amd64 (3.12.1-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:amd64 (3.12.1-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libtmglib3:amd64 (3.12.1-4) ... Setting up liblapack-dev:amd64 (3.12.1-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up liblapacke:amd64 (3.12.1-4) ... Setting up libtmglib-dev:amd64 (3.12.1-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up liblapacke-dev:amd64 (3.12.1-4) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/emmax-0~beta.20100307/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../emmax_0~beta.20100307-6_source.changes dpkg-buildpackage: info: source package emmax dpkg-buildpackage: info: source version 0~beta.20100307-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/emmax-0~beta.20100307' rm -f *.o emmax emmax-kin make[1]: Leaving directory '/build/reproducible-path/emmax-0~beta.20100307' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/emmax-0~beta.20100307' gcc -O2 -Wall -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/emmax-0~beta.20100307=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -o emmax emmax.c -llapacke -llapack -lblas -lm -lz -Wl,-z,relro gcc -O2 -Wall -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/emmax-0~beta.20100307=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -o emmax-kin emmax-kin.c -llapacke -llapack -lblas -lm -lz -Wl,-z,relro make[1]: Leaving directory '/build/reproducible-path/emmax-0~beta.20100307' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/emmax/ make -j42 install DESTDIR=/build/reproducible-path/emmax-0\~beta.20100307/debian/emmax AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/emmax-0~beta.20100307' mkdir -p /build/reproducible-path/emmax-0~beta.20100307/debian/emmax/usr/bin/ cp emmax emmax-kin /build/reproducible-path/emmax-0~beta.20100307/debian/emmax/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/emmax-0~beta.20100307' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/emmax-0~beta.20100307' dh_install --sourcedir=. make[1]: Leaving directory '/build/reproducible-path/emmax-0~beta.20100307' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'emmax-dbgsym' in '../emmax-dbgsym_0~beta.20100307-6_amd64.deb'. dpkg-deb: building package 'emmax' in '../emmax_0~beta.20100307-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../emmax_0~beta.20100307-6_amd64.buildinfo dpkg-genchanges --build=binary -O../emmax_0~beta.20100307-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2950813 and its subdirectories I: Current time: Wed Sep 2 05:20:53 -12 2026 I: pbuilder-time-stamp: 1788369653 Thu Jul 31 10:57:54 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Thu Jul 31 10:57:54 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Thu Jul 31 11:00:50 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Thu Jul 31 11:00:51 UTC 2025 I: emmax_0~beta.20100307-6_amd64.changes: Format: 1.8 Date: Sun, 13 Jul 2025 13:36:34 +0200 Source: emmax Binary: emmax emmax-dbgsym Architecture: amd64 Version: 0~beta.20100307-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: emmax - genetic mapping considering population structure Closes: 1109178 Changes: emmax (0~beta.20100307-6) unstable; urgency=medium . * Team upload. * d/control: emmax breaks libatlas3-base. The libatlas3-base package has been removed from trixie, but apt still tries to preserve the obsolete package instead of upgrading emmax. (Closes: #1109178) * d/control: fix duplicate first name of uploader. * d/control: declare compliance to standards version 4.7.2. * d/p/*.patch: normalize Last-Update timestamp. Checksums-Sha1: 260146637f6a936efd81ee6143b27a1452513471 52680 emmax-dbgsym_0~beta.20100307-6_amd64.deb f62fdb47afc3c8538ded86036115f0b9eb3b87c5 5224 emmax_0~beta.20100307-6_amd64.buildinfo 4edd3045b2f2e1c300a40e3a5c65137cf5f93fc0 28200 emmax_0~beta.20100307-6_amd64.deb Checksums-Sha256: b9e4a69f75df945d87dbbf38e5200e706d0522ad242858aae06e28b487199e79 52680 emmax-dbgsym_0~beta.20100307-6_amd64.deb 4db2613dd4e89f00196c9497fdd180c0feed1463bd782e8f06632b448e64002b 5224 emmax_0~beta.20100307-6_amd64.buildinfo 42db311097749925d3d188aab72c8cf7791f81ccc502c4ba48f0899ad469ca71 28200 emmax_0~beta.20100307-6_amd64.deb Files: 237b9d515a9a2be99b6e9a486bef623f 52680 debug optional emmax-dbgsym_0~beta.20100307-6_amd64.deb ae92d50cd82ef3735b7506a01e682a5b 5224 science optional emmax_0~beta.20100307-6_amd64.buildinfo dc61df24d1e69d29a18202aa3c277fb4 28200 science optional emmax_0~beta.20100307-6_amd64.deb Thu Jul 31 11:00:51 UTC 2025 I: diffoscope 302 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_20-62498.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.EUvgjBwL/emmax_0~beta.20100307-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.EUvgjBwL/emmax_0~beta.20100307-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.EUvgjBwL/emmax_0~beta.20100307-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.EUvgjBwL/b1/emmax_0~beta.20100307-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.EUvgjBwL/b2/emmax_0~beta.20100307-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 161ms CPU time consumed: 162ms Thu Jul 31 11:00:52 UTC 2025 I: diffoscope 302 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 31 11:00:52 UTC 2025 I: emmax from unstable built successfully and reproducibly on amd64. Thu Jul 31 11:00:52 UTC 2025 I: Removing signed emmax_0~beta.20100307-6_amd64.buildinfo.asc files: removed './b1/emmax_0~beta.20100307-6_amd64.buildinfo.asc' removed './b2/emmax_0~beta.20100307-6_amd64.buildinfo.asc'