Thu Mar  6 03:04:00 UTC 2025  I: starting to build genomethreader/unstable/amd64 on jenkins on '2025-03-06 03:03'
Thu Mar  6 03:04:00 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_38/49517/console.log
Thu Mar  6 03:04:00 UTC 2025  I: Downloading source for unstable/genomethreader=1.7.3+dfsg-10
--2025-03-06 03:04:00--  http://deb.debian.org/debian/pool/main/g/genomethreader/genomethreader_1.7.3%2bdfsg-10.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2236 (2.2K) [text/prs.lines.tag]
Saving to: ‘genomethreader_1.7.3+dfsg-10.dsc’

     0K ..                                                    100%  214M=0s

2025-03-06 03:04:00 (214 MB/s) - ‘genomethreader_1.7.3+dfsg-10.dsc’ saved [2236/2236]

Thu Mar  6 03:04:00 UTC 2025  I: genomethreader_1.7.3+dfsg-10.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: genomethreader
Binary: genomethreader
Architecture: any
Version: 1.7.3+dfsg-10
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Homepage: https://genomethreader.org
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/genomethreader
Vcs-Git: https://salsa.debian.org/med-team/genomethreader.git
Testsuite: autopkgtest
Testsuite-Triggers: genometools, ruby
Build-Depends: debhelper-compat (= 13), genometools, libgenometools0-dev, libvmatch-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, liblua5.1-0-dev, libtre-dev, asciidoctor
Package-List:
 genomethreader deb science optional arch=any
Checksums-Sha1:
 84e7de5ac11ef4305a5e40eddb1c07383c464964 39993616 genomethreader_1.7.3+dfsg.orig.tar.xz
 f890cd97e5199f865f5e5fcaebc7ad3042be82b4 14160 genomethreader_1.7.3+dfsg-10.debian.tar.xz
Checksums-Sha256:
 d19808894b1c86312b51f1aeb6e11f5ba0dfc8dcf237bf08fc0615d26b0cf051 39993616 genomethreader_1.7.3+dfsg.orig.tar.xz
 1969812375367ab0c159fe01244cd2ae79d1c1f3bb55bba365ea6f6eb8958664 14160 genomethreader_1.7.3+dfsg-10.debian.tar.xz
Files:
 62eb8a06280490f22b646147f0e0f444 39993616 genomethreader_1.7.3+dfsg.orig.tar.xz
 fd558cdc8a120fdbcdb95f32c005a27d 14160 genomethreader_1.7.3+dfsg-10.debian.tar.xz

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Thu Mar  6 03:04:00 UTC 2025  I: Checking whether the package is not for us
Thu Mar  6 03:04:00 UTC 2025  I: Starting 1st build on remote node infom02-amd64.debian.net.
Thu Mar  6 03:04:00 UTC 2025  I: Preparing to do remote build '1' on infom02-amd64.debian.net.
Thu Mar  6 03:06:36 UTC 2025  I: Deleting $TMPDIR on infom02-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Apr  7 21:27:03 -12 2026
I: pbuilder-time-stamp: 1775640423
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [genomethreader_1.7.3+dfsg-10.dsc]
I: copying [./genomethreader_1.7.3+dfsg.orig.tar.xz]
I: copying [./genomethreader_1.7.3+dfsg-10.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./genomethreader_1.7.3+dfsg-10.dsc: unsupported subcommand
dpkg-source: info: extracting genomethreader in genomethreader-1.7.3+dfsg
dpkg-source: info: unpacking genomethreader_1.7.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking genomethreader_1.7.3+dfsg-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-ftbfs-with-ruby-3.2.patch
dpkg-source: info: applying debian-gt-libs.patch
dpkg-source: info: applying gt-path-fix.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying search-paths.patch
dpkg-source: info: applying m32-m64-ignore.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying disable-fastdp-tests.patch
dpkg-source: info: applying extend-clean.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2854116/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='unstable'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='ab9f098df8334cbb8e399a96602377cf'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='2854116'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3ZpsTNgN/pbuilderrc_2UKC --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3ZpsTNgN/b1 --logfile b1/build.log genomethreader_1.7.3+dfsg-10.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
I: uname -a
  Linux infom02-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2854116/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), genometools, libgenometools0-dev, libvmatch-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, liblua5.1-0-dev, libtre-dev, asciidoctor
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19783 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on genometools; however:
  Package genometools is not installed.
 pbuilder-satisfydepends-dummy depends on libgenometools0-dev; however:
  Package libgenometools0-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libvmatch-dev; however:
  Package libvmatch-dev is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
  Package libbz2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libexpat1-dev; however:
  Package libexpat1-dev is not installed.
 pbuilder-satisfydepends-dummy depends on liblua5.1-0-dev; however:
  Package liblua5.1-0-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libtre-dev; however:
  Package libtre-dev is not installed.
 pbuilder-satisfydepends-dummy depends on asciidoctor; however:
  Package asciidoctor is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} genometools{a} genometools-common{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libdatrie1{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgenometools0-dev{a} libgenometools0t64{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} liblua5.1-0{a} liblua5.1-0-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses-dev{a} libncurses6{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libreadline-dev{a} libreadline8t64{a} libruby{a} libruby3.3{a} libthai-data{a} libthai0{a} libtool{a} libtre-dev{a} libtre5{a} libuchardet0{a} libunistring5{a} libvmatch-dev{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} lua-filesystem{a} lua-lpeg{a} lua-md5{a} m4{a} man-db{a} openssl{a} po-debconf{a} rake{a} readline-common{a} ruby{a} ruby-asciidoctor{a} ruby-did-you-mean{a} ruby-minitest{a} ruby-net-telnet{a} ruby-power-assert{a} ruby-rubygems{a} ruby-test-unit{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.3{a} rubygems-integration{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc curl fonts-lato libarchive-cpio-perl libglib2.0-data libgpm2 libjs-jquery libltdl-dev libmail-sendmail-perl lynx pkgconf ruby-sdbm shared-mime-info wget xdg-user-dirs zip 
0 packages upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
Need to get 45.5 MB of archives. After unpacking 164 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB]
Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 14 http://deb.debian.org/debian unstable/main amd64 rubygems-integration all 1.19 [5488 B]
Get: 15 http://deb.debian.org/debian unstable/main amd64 rake all 13.2.1-1 [65.2 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 ruby-minitest all 5.25.4-2 [66.2 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 ruby-power-assert all 2.0.3-1 [11.8 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 ruby-test-unit all 3.6.2-1 [79.1 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB]
Get: 22 http://deb.debian.org/debian unstable/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 libruby3.3 amd64 3.3.7-1 [6274 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 ruby3.3 amd64 3.3.7-1 [827 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 libruby amd64 1:3.3+b1 [5440 B]
Get: 28 http://deb.debian.org/debian unstable/main amd64 ruby-rubygems all 3.6.3-1 [406 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 ruby amd64 1:3.3+b1 [6560 B]
Get: 30 http://deb.debian.org/debian unstable/main amd64 ruby-asciidoctor all 2.0.23-1 [214 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 asciidoctor all 2.0.23-1 [88.7 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-6 [294 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 37 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB]
Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 43 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 46 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 47 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB]
Get: 48 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 49 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 50 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 51 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get: 52 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 53 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get: 54 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1 [282 kB]
Get: 55 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 56 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 57 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 58 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB]
Get: 59 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB]
Get: 60 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2 [463 kB]
Get: 61 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 63 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 64 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 65 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 66 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 67 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 68 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 69 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 70 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB]
Get: 71 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get: 72 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.83.5-1 [1513 kB]
Get: 73 http://deb.debian.org/debian unstable/main amd64 liblua5.1-0 amd64 5.1.5-10 [110 kB]
Get: 74 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 75 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 76 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB]
Get: 77 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get: 78 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get: 79 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get: 80 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB]
Get: 81 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB]
Get: 82 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB]
Get: 83 http://deb.debian.org/debian unstable/main amd64 libtre5 amd64 0.9.0-1 [50.0 kB]
Get: 84 http://deb.debian.org/debian unstable/main amd64 lua-filesystem amd64 1.8.0-3+b2 [11.9 kB]
Get: 85 http://deb.debian.org/debian unstable/main amd64 lua-lpeg amd64 1.1.0-2 [42.3 kB]
Get: 86 http://deb.debian.org/debian unstable/main amd64 lua-md5 amd64 1.2+git+1+8d87fee-2+b2 [13.7 kB]
Get: 87 http://deb.debian.org/debian unstable/main amd64 genometools-common all 1.6.5+ds-2.2 [195 kB]
Get: 88 http://deb.debian.org/debian unstable/main amd64 genometools amd64 1.6.5+ds-2.2 [1656 kB]
Get: 89 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB]
Get: 90 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB]
Get: 91 http://deb.debian.org/debian unstable/main amd64 libgenometools0t64 amd64 1.6.5+ds-2.2 [1420 kB]
Get: 92 http://deb.debian.org/debian unstable/main amd64 libgenometools0-dev amd64 1.6.5+ds-2.2 [95.2 kB]
Get: 93 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 94 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5+20250216-1 [105 kB]
Get: 95 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.5+20250216-1 [353 kB]
Get: 96 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-6 [153 kB]
Get: 97 http://deb.debian.org/debian unstable/main amd64 liblua5.1-0-dev amd64 5.1.5-10 [135 kB]
Get: 98 http://deb.debian.org/debian unstable/main amd64 libtre-dev amd64 0.9.0-1 [36.5 kB]
Get: 99 http://deb.debian.org/debian unstable/main amd64 libvmatch-dev amd64 2.3.1+dfsg-9 [661 kB]
Get: 100 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
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Regenerating fonts cache... done.
Setting up po-debconf (1.0.21+nmu1) ...
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Not building database; man-db/auto-update is not 'true'.
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Updating certificates in /etc/ssl/certs...
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Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
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Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/genomethreader-1.7.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../genomethreader_1.7.3+dfsg-10_source.changes
dpkg-buildpackage: info: source package genomethreader
dpkg-buildpackage: info: source version 1.7.3+dfsg-10
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
dh_clean
make licensemanager=no opt=yes 64bit=yes cleanup
make[2]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
rm -rf obj lib
rm -rf testsuite/stest_testsuite testsuite/stest_stest_tests
rm -rf bin
find gthdata -name '*.des' | xargs rm -f
find gthdata -name '*.esq' | xargs rm -f
find gthdata -name '*.md5' | xargs rm -f
find gthdata -name '*.ois' | xargs rm -f
find gthdata -name '*.sds' | xargs rm -f
find gthdata -name '*.suf' | xargs rm -f
find gthdata -name '*.bck' | xargs rm -f
find gthdata -name '*.llv' | xargs rm -f
find gthdata -name '*.bwt' | xargs rm -f
find gthdata -name '*.tis' | xargs rm -f
find gthdata -name '*.ssp' | xargs rm -f
find gthdata -name '*.lcp' | xargs rm -f
find gthdata -name '*.sti1' | xargs rm -f
find testdata -name '*.des' | xargs rm -f
find testdata -name '*.esq' | xargs rm -f
find testdata -name '*.md5' | xargs rm -f
find testdata -name '*.ois' | xargs rm -f
find testdata -name '*.sds' | xargs rm -f
find testdata -name '*.suf' | xargs rm -f
find testdata -name '*.bck' | xargs rm -f
find testdata -name '*.llv' | xargs rm -f
find testdata -name '*.bwt' | xargs rm -f
find testdata -name '*.tis' | xargs rm -f
find testdata -name '*.ssp' | xargs rm -f
find testdata -name '*.lcp' | xargs rm -f
find testdata -name '*.sti1' | xargs rm -f
find testdata -name '*.al1' | xargs rm -f
find testdata -name '*.prj' | xargs rm -f
find testdata -name '*.polya*' | xargs rm -f
make[2]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
rm -rf bin/bssm debian/bssm bin/gthdata debian/gthdata
rm -rf /build/reproducible-path/genomethreader-1.7.3+dfsg/debian/man
rm -f debian/*substvars
make[1]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
make licensemanager=no opt=yes 64bit=yes
make[2]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
[create obj/gth_config.h]
[compile findfile.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/findfile.c -o obj/src/libgenomethreader/findfile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/findfile.c -o obj/src/libgenomethreader/findfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/findfile.o
[compile gt_align_dna.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gt_align_dna.c -o obj/src/libgenomethreader/gt_align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gt_align_dna.c -o obj/src/libgenomethreader/gt_align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gt_align_dna.o
[compile gt_gthgetseq.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gt_gthgetseq.c -o obj/src/libgenomethreader/gt_gthgetseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gt_gthgetseq.c -o obj/src/libgenomethreader/gt_gthgetseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gt_gthgetseq.o
[compile gthmkvtree.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthmkvtree.c -o obj/src/libgenomethreader/gthmkvtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthmkvtree.c -o obj/src/libgenomethreader/gthmkvtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthmkvtree.o
[compile gthpolyafunc.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthpolyafunc.c -o obj/src/libgenomethreader/gthpolyafunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthpolyafunc.c -o obj/src/libgenomethreader/gthpolyafunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthpolyafunc.o
[compile gthpre.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthpre.c -o obj/src/libgenomethreader/gthpre.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthpre.c -o obj/src/libgenomethreader/gthpre.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthpre.o
[compile gthversionfunc.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthversionfunc.c -o obj/src/libgenomethreader/gthversionfunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthversionfunc.c -o obj/src/libgenomethreader/gthversionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthversionfunc.o
[compile gthvmatch.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/gthvmatch.c -o obj/src/libgenomethreader/gthvmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/gthvmatch.c -o obj/src/libgenomethreader/gthvmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/gthvmatch.o
[compile jt.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/jt.c -o obj/src/libgenomethreader/jt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/jt.c -o obj/src/libgenomethreader/jt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/jt.o
[compile jt_align_dna.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/jt_align_dna.c -o obj/src/libgenomethreader/jt_align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/jt_align_dna.c -o obj/src/libgenomethreader/jt_align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/jt_align_dna.o
[compile jt_align_protein.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/jt_align_protein.c -o obj/src/libgenomethreader/jt_align_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/jt_align_protein.c -o obj/src/libgenomethreader/jt_align_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/jt_align_protein.o
[compile seq_con_multiseq.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/libgenomethreader/seq_con_multiseq.c -o obj/src/libgenomethreader/seq_con_multiseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/libgenomethreader/seq_con_multiseq.c -o obj/src/libgenomethreader/seq_con_multiseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/libgenomethreader/seq_con_multiseq.o
[compile ags.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/ags.c -o obj/src/gth/ags.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/ags.c -o obj/src/gth/ags.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/ags.o
[compile ags_build.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/ags_build.c -o obj/src/gth/ags_build.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/ags_build.c -o obj/src/gth/ags_build.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/ags_build.o
[compile align_dna.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/align_dna.c -o obj/src/gth/align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/align_dna.c -o obj/src/gth/align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/align_dna.o
[compile align_protein.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/align_protein.c -o obj/src/gth/align_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/align_protein.c -o obj/src/gth/align_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/align_protein.o
[compile backtrace_path.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/backtrace_path.c -o obj/src/gth/backtrace_path.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/backtrace_path.c -o obj/src/gth/backtrace_path.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/backtrace_path.o
[compile bssm_helper.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_helper.c -o obj/src/gth/bssm_helper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_helper.c -o obj/src/gth/bssm_helper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_helper.o
[compile bssm_param.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_param.c -o obj/src/gth/bssm_param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_param.c -o obj/src/gth/bssm_param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_param.o
[compile bssm_param_rmsd.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_param_rmsd.c -o obj/src/gth/bssm_param_rmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_param_rmsd.c -o obj/src/gth/bssm_param_rmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_param_rmsd.o
[compile bssm_seq_processor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_seq_processor.c -o obj/src/gth/bssm_seq_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_seq_processor.c -o obj/src/gth/bssm_seq_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_seq_processor.o
[compile bssm_train_stream.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_train_stream.c -o obj/src/gth/bssm_train_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_train_stream.c -o obj/src/gth/bssm_train_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_train_stream.o
[compile bssm_train_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/bssm_train_visitor.c -o obj/src/gth/bssm_train_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/bssm_train_visitor.c -o obj/src/gth/bssm_train_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/bssm_train_visitor.o
[compile call_info.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/call_info.c -o obj/src/gth/call_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/call_info.c -o obj/src/gth/call_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/call_info.o
[compile chain_collection.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/chain_collection.c -o obj/src/gth/chain_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/chain_collection.c -o obj/src/gth/chain_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/chain_collection.o
[compile chaining.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/chaining.c -o obj/src/gth/chaining.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/chaining.c -o obj/src/gth/chaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/chaining.o
[compile compute_scores.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/compute_scores.c -o obj/src/gth/compute_scores.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/compute_scores.c -o obj/src/gth/compute_scores.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/compute_scores.o
[compile desc_cache.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/desc_cache.c -o obj/src/gth/desc_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/desc_cache.c -o obj/src/gth/desc_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/desc_cache.o
[compile dp_options_core.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_options_core.c -o obj/src/gth/dp_options_core.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_options_core.c -o obj/src/gth/dp_options_core.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_options_core.o
[compile dp_options_est.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_options_est.c -o obj/src/gth/dp_options_est.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_options_est.c -o obj/src/gth/dp_options_est.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_options_est.o
[compile dp_options_postpro.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_options_postpro.c -o obj/src/gth/dp_options_postpro.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_options_postpro.c -o obj/src/gth/dp_options_postpro.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_options_postpro.o
[compile dp_param.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_param.c -o obj/src/gth/dp_param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_param.c -o obj/src/gth/dp_param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_param.o
[compile dp_scores_protein.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/dp_scores_protein.c -o obj/src/gth/dp_scores_protein.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/dp_scores_protein.c -o obj/src/gth/dp_scores_protein.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/dp_scores_protein.o
[compile editoperation.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/editoperation.c -o obj/src/gth/editoperation.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/editoperation.c -o obj/src/gth/editoperation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/editoperation.o
[compile gff3_pgl_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gff3_pgl_visitor.c -o obj/src/gth/gff3_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gff3_pgl_visitor.c -o obj/src/gth/gff3_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gff3_pgl_visitor.o
[compile gff3_sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gff3_sa_visitor.c -o obj/src/gth/gff3_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gff3_sa_visitor.c -o obj/src/gth/gff3_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gff3_sa_visitor.o
[compile gt_gth.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gth.c -o obj/src/gth/gt_gth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gth.c -o obj/src/gth/gt_gth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gth.o
[compile gt_gthbssmbuild.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmbuild.c -o obj/src/gth/gt_gthbssmbuild.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmbuild.c -o obj/src/gth/gt_gthbssmbuild.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmbuild.o
[compile gt_gthbssmfileinfo.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmfileinfo.c -o obj/src/gth/gt_gthbssmfileinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmfileinfo.c -o obj/src/gth/gt_gthbssmfileinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmfileinfo.o
[compile gt_gthbssmprint.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmprint.c -o obj/src/gth/gt_gthbssmprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmprint.c -o obj/src/gth/gt_gthbssmprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmprint.o
[compile gt_gthbssmrmsd.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmrmsd.c -o obj/src/gth/gt_gthbssmrmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmrmsd.c -o obj/src/gth/gt_gthbssmrmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmrmsd.o
[compile gt_gthbssmtrain.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthbssmtrain.c -o obj/src/gth/gt_gthbssmtrain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthbssmtrain.c -o obj/src/gth/gt_gthbssmtrain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthbssmtrain.o
[compile gt_gthconsensus.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthconsensus.c -o obj/src/gth/gt_gthconsensus.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthconsensus.c -o obj/src/gth/gt_gthconsensus.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthconsensus.o
[compile gt_gthfilestat.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthfilestat.c -o obj/src/gth/gt_gthfilestat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthfilestat.c -o obj/src/gth/gt_gthfilestat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthfilestat.o
[compile gt_gthmkbssmfiles.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthmkbssmfiles.c -o obj/src/gth/gt_gthmkbssmfiles.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthmkbssmfiles.c -o obj/src/gth/gt_gthmkbssmfiles.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthmkbssmfiles.o
[compile gt_gthsplit.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gt_gthsplit.c -o obj/src/gth/gt_gthsplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gt_gthsplit.c -o obj/src/gth/gt_gthsplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gt_gthsplit.o
[compile gthalignment.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthalignment.c -o obj/src/gth/gthalignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthalignment.c -o obj/src/gth/gthalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthalignment.o
[compile gthchain.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthchain.c -o obj/src/gth/gthchain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthchain.c -o obj/src/gth/gthchain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthchain.o
[compile gthcluster.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthcluster.c -o obj/src/gth/gthcluster.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthcluster.c -o obj/src/gth/gthcluster.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthcluster.o
[compile gthcutoffsminimal.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthcutoffsminimal.c -o obj/src/gth/gthcutoffsminimal.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthcutoffsminimal.c -o obj/src/gth/gthcutoffsminimal.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthcutoffsminimal.o
[compile gthcutoffsrelaxed.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthcutoffsrelaxed.c -o obj/src/gth/gthcutoffsrelaxed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthcutoffsrelaxed.c -o obj/src/gth/gthcutoffsrelaxed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthcutoffsrelaxed.o
[compile gthcutoffsstrict.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthcutoffsstrict.c -o obj/src/gth/gthcutoffsstrict.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthcutoffsstrict.c -o obj/src/gth/gthcutoffsstrict.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthcutoffsstrict.o
[compile gthmatch.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthmatch.c -o obj/src/gth/gthmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthmatch.c -o obj/src/gth/gthmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthmatch.o
[compile gthorf.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthorf.c -o obj/src/gth/gthorf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthorf.c -o obj/src/gth/gthorf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthorf.o
[compile gthoutput.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthoutput.c -o obj/src/gth/gthoutput.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthoutput.c -o obj/src/gth/gthoutput.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthoutput.o
[compile gthsadistri.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthsadistri.c -o obj/src/gth/gthsadistri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthsadistri.c -o obj/src/gth/gthsadistri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthsadistri.o
[compile gthsortags.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthsortags.c -o obj/src/gth/gthsortags.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthsortags.c -o obj/src/gth/gthsortags.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthsortags.o
[compile gthsplicesitescr.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthsplicesitescr.c -o obj/src/gth/gthsplicesitescr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthsplicesitescr.c -o obj/src/gth/gthsplicesitescr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthsplicesitescr.o
[compile gthtrans.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthtrans.c -o obj/src/gth/gthtrans.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthtrans.c -o obj/src/gth/gthtrans.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthtrans.o
[compile gthtravalign.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthtravalign.c -o obj/src/gth/gthtravalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthtravalign.c -o obj/src/gth/gthtravalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthtravalign.o
[compile gthverbosefunc.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthverbosefunc.c -o obj/src/gth/gthverbosefunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthverbosefunc.c -o obj/src/gth/gthverbosefunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthverbosefunc.o
[compile gthverbosefuncvm.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthverbosefuncvm.c -o obj/src/gth/gthverbosefuncvm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthverbosefuncvm.c -o obj/src/gth/gthverbosefuncvm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthverbosefuncvm.o
[compile gthxml.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/gthxml.c -o obj/src/gth/gthxml.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/gthxml.c -o obj/src/gth/gthxml.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/gthxml.o
[compile indent.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/indent.c -o obj/src/gth/indent.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/indent.c -o obj/src/gth/indent.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/indent.o
[compile input.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/input.c -o obj/src/gth/input.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/input.c -o obj/src/gth/input.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/input.o
[compile intermediate.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/intermediate.c -o obj/src/gth/intermediate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/intermediate.c -o obj/src/gth/intermediate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/intermediate.o
[compile md5_cache.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/md5_cache.c -o obj/src/gth/md5_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/md5_cache.c -o obj/src/gth/md5_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/md5_cache.o
[compile parse_options.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/parse_options.c -o obj/src/gth/parse_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/parse_options.c -o obj/src/gth/parse_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/parse_options.o
[compile path_matrix.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/path_matrix.c -o obj/src/gth/path_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/path_matrix.c -o obj/src/gth/path_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/path_matrix.o
[compile path_walker.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/path_walker.c -o obj/src/gth/path_walker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/path_walker.c -o obj/src/gth/path_walker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/path_walker.o
[compile pgl.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/pgl.c -o obj/src/gth/pgl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/pgl.c -o obj/src/gth/pgl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/pgl.o
[compile pgl_collection.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/pgl_collection.c -o obj/src/gth/pgl_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/pgl_collection.c -o obj/src/gth/pgl_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/pgl_collection.o
[compile pgl_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/pgl_visitor.c -o obj/src/gth/pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/pgl_visitor.c -o obj/src/gth/pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/pgl_visitor.o
[compile proc_sa_collection.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/proc_sa_collection.c -o obj/src/gth/proc_sa_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/proc_sa_collection.c -o obj/src/gth/proc_sa_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/proc_sa_collection.o
[compile region_factory.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/region_factory.c -o obj/src/gth/region_factory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/region_factory.c -o obj/src/gth/region_factory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/region_factory.o
[compile run_header.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/run_header.c -o obj/src/gth/run_header.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/run_header.c -o obj/src/gth/run_header.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/run_header.o
[compile sa.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa.c -o obj/src/gth/sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa.c -o obj/src/gth/sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa.o
[compile sa_cmp.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa_cmp.c -o obj/src/gth/sa_cmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa_cmp.c -o obj/src/gth/sa_cmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa_cmp.o
[compile sa_collection.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa_collection.c -o obj/src/gth/sa_collection.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa_collection.c -o obj/src/gth/sa_collection.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa_collection.o
[compile sa_filter.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa_filter.c -o obj/src/gth/sa_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa_filter.c -o obj/src/gth/sa_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa_filter.o
[compile sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/sa_visitor.c -o obj/src/gth/sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/sa_visitor.c -o obj/src/gth/sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/sa_visitor.o
[compile seq_con.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/seq_con.c -o obj/src/gth/seq_con.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/seq_con.c -o obj/src/gth/seq_con.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/seq_con.o
[compile similarity_filter.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/similarity_filter.c -o obj/src/gth/similarity_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/similarity_filter.c -o obj/src/gth/similarity_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/similarity_filter.o
[compile splice_site_model.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/splice_site_model.c -o obj/src/gth/splice_site_model.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/splice_site_model.c -o obj/src/gth/splice_site_model.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/splice_site_model.o
[compile spliced_seq.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/spliced_seq.c -o obj/src/gth/spliced_seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/spliced_seq.c -o obj/src/gth/spliced_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/spliced_seq.o
[compile stat.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/stat.c -o obj/src/gth/stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/stat.c -o obj/src/gth/stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/stat.o
[compile time.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/time.c -o obj/src/gth/time.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/time.c -o obj/src/gth/time.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/time.o
[compile txt_pgl_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/txt_pgl_visitor.c -o obj/src/gth/txt_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/txt_pgl_visitor.c -o obj/src/gth/txt_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/txt_pgl_visitor.o
[compile txt_sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/txt_sa_visitor.c -o obj/src/gth/txt_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/txt_sa_visitor.c -o obj/src/gth/txt_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/txt_sa_visitor.o
[compile xml_final_sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/xml_final_sa_visitor.c -o obj/src/gth/xml_final_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/xml_final_sa_visitor.c -o obj/src/gth/xml_final_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/xml_final_sa_visitor.o
[compile xml_inter_sa_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/xml_inter_sa_visitor.c -o obj/src/gth/xml_inter_sa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/xml_inter_sa_visitor.c -o obj/src/gth/xml_inter_sa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/xml_inter_sa_visitor.o
[compile xml_pgl_visitor.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth/xml_pgl_visitor.c -o obj/src/gth/xml_pgl_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth/xml_pgl_visitor.c -o obj/src/gth/xml_pgl_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth/xml_pgl_visitor.o
[link libgenomethreader.a]
ar: `u' modifier ignored since `D' is the default (see `U')
ar: creating lib/libgenomethreader.a
[compile gth.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gth.c -o obj/src/gth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gth.c -o obj/src/gth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gth.o
[link gth]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gth.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gth
[compile gthconsensus.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthconsensus.c -o obj/src/gthconsensus.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthconsensus.c -o obj/src/gthconsensus.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthconsensus.o
[link gthconsensus]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthconsensus.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthconsensus
[compile gthbssmfileinfo.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmfileinfo.c -o obj/src/gthbssmfileinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmfileinfo.c -o obj/src/gthbssmfileinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmfileinfo.o
[link gthbssmfileinfo]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmfileinfo.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmfileinfo
[compile gthbssmbuild.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmbuild.c -o obj/src/gthbssmbuild.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmbuild.c -o obj/src/gthbssmbuild.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmbuild.o
[link gthbssmbuild]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmbuild.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmbuild
[compile gthbssmprint.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmprint.c -o obj/src/gthbssmprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmprint.c -o obj/src/gthbssmprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmprint.o
[link gthbssmprint]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmprint.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmprint
[compile gthbssmrmsd.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmrmsd.c -o obj/src/gthbssmrmsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmrmsd.c -o obj/src/gthbssmrmsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmrmsd.o
[link gthbssmrmsd]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmrmsd.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmrmsd
[compile gthbssmtrain.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthbssmtrain.c -o obj/src/gthbssmtrain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthbssmtrain.c -o obj/src/gthbssmtrain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthbssmtrain.o
[link gthbssmtrain]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthbssmtrain.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthbssmtrain
[compile gthfilestat.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthfilestat.c -o obj/src/gthfilestat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthfilestat.c -o obj/src/gthfilestat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthfilestat.o
[link gthfilestat]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthfilestat.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthfilestat
[compile gthmkbssmfiles.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthmkbssmfiles.c -o obj/src/gthmkbssmfiles.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthmkbssmfiles.c -o obj/src/gthmkbssmfiles.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthmkbssmfiles.o
[link gthmkbssmfiles]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthmkbssmfiles.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthmkbssmfiles
[compile gthsplit.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthsplit.c -o obj/src/gthsplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthsplit.c -o obj/src/gthsplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthsplit.o
[link gthsplit]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthsplit.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthsplit
[compile gthunit.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthunit.c -o obj/src/gthunit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthunit.c -o obj/src/gthunit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthunit.o
[link gthunit]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthunit.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthunit
[compile gthgetseq.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/gthgetseq.c -o obj/src/gthgetseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/gthgetseq.c -o obj/src/gthgetseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/gthgetseq.o
[link gthgetseq]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/gthgetseq.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/gthgetseq
[compile align_dna.o]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -c src/align_dna.c -o obj/src/align_dna.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomethreader-1.7.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3 
cc -c src/align_dna.c -o obj/src/align_dna.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DWITHLCP -DUNISTD_H="<unistd.h>" -DEXPAT_H="<expat.h>" -DRNV_VERSION=\"1.7.8\" -I/usr/include/genometools -I/usr/include/vmatch -I/usr/include/lua5.1 -I/build/reproducible-path/genomethreader-1.7.3+dfsg/src -I/build/reproducible-path/genomethreader-1.7.3+dfsg/obj  -U_FORTIFY_SOURCE -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/include -I/build/reproducible-path/genomethreader-1.7.3+dfsg/../vstree/src/Vmatch  -DNOLICENSEMANAGER  -MM -MP -MT obj/src/align_dna.o
[link align_dna]
cc -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Llib obj/src/align_dna.o lib/libgenomethreader.a /usr/lib/libvmatch.a /usr/lib/libvmengine.a /usr/lib/libmkvtree.a /usr/lib/libkurtz.a /usr/lib/libkurtz-basic.a -lm -lgenometools -lbz2 -lz -lexpat -ltre -llua5.1 -ldl -lpthread  -o bin/align_dna
make[2]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
make licensemanager=no opt=yes 64bit=yes train
make[2]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
[train arabidopsis.bssm]
[train rice.bssm]
[train maize.bssm]
[train medicago.bssm]
[write old BSSMs]
[copy gthdata stuff to bin]
make[2]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
make[1]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
make licensemanager=no 64bit=yes  test
make[2]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
cd testsuite && env -i GTH_MEM_BOOKKEEPING=on MAKE=make PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" \
  BSSMDIR=/build/reproducible-path/genomethreader-1.7.3+dfsg/bin/bssm GTHDATADIR=/build/reproducible-path/genomethreader-1.7.3+dfsg/gthdata/gth \
          CCACHE_DISABLE=yes HOME=/nonexistent/first-build GTHTESTDATADIR= \
          ruby -I. testsuite.rb \
          -testdata /build/reproducible-path/genomethreader-1.7.3+dfsg/testdata -bin /build/reproducible-path/genomethreader-1.7.3+dfsg/bin -cur /build/reproducible-path/genomethreader-1.7.3+dfsg \
          -gtruby /build/reproducible-path/genomethreader-1.7.3+dfsg/gtruby 
  1: gth                                                         : ok
  2: gth -help                                                   : ok
  3: gth -help+                                                  : ok
  4: gth -version                                                : ok
  5: gth regression test (assertion in gthsafilter)              : ok
  6: gth regression test (-gff3out -intermediate)                : ok
  7: gth regression test (-gff3out -intermediate -fastdp)        : ok
  8: gth regression test (-gff3out -skipalignmentout)            : ok
  9: gth regression test (-gff3out -skipalignmentout -fastdp)    : ok
 10: gth regression test (-gff3out -intermediate -o)             : ok
 11: gth regression test (-gff3out -skipalignmentout -o)         : ok
 12: gthconsensus regression test (-gff3out -intermediate)       : ok
 13: gthconsensus regression test (-gff3out -skipalignmentout)   : ok
 14: gthconsensus regression test (-gff3out -intermediate -o)    : ok
 15: gthconsensus regression test (-gff3out -skipalignmentout -o): ok
 16: gth regression test (-exondistri)                           : ok
 17: gth regression test (-introndistri)                         : ok
 18: gth regression test (-refseqcovdistri)                      : ok
 19: gth regression test (all distributions)                     : ok
 20: gth regression test (-skipindexcheck)                       : ok
 21: gth regression test (index reconstruction)                  : ok
 22: gth regression test (-createindicesonly & -noautoindex)     : ok
 23: gth regression test (coverage assertion)                    : ok
 24: gth -gff3out -intermediate (long intron files)              : ok
 25: gth -gff3out -skipalignmentout (long intron files)          : ok
 26: gth -gff3out -frompos (correct positions in sequence region): ok
 27: gth -gff3out -intermediate (correct reverse positions)      : ok
 28: gth arabidopsis                                             : ok
 29: gth illegal character in protein file                       : ok
 30: align_dna                                                   : ok
 31: gth -gff3descranges (single exon)                           : ok
 32: gthconsensus -help                                          : ok
 33: gthconsensus -help+                                         : ok
 34: gthconsensus empty_file                                     : ok
 35: gthconsensus empty_file.gz                                  : ok
 36: gthconsensus empty_file.bz2                                 : ok
 37: gthbssmfileinfo (arabidopsis)                               : ok
 38: gthbssmfileinfo (human)                                     : ok
 39: gthbssmprint (arabidopsis)                                  : ok
 40: gthbssmprint (human)                                        : ok
 41: gthbssmrmsd (arabidopsis)                                   : ok
 42: gthbssmtrain (examples from manual)                         : ok
 43: gthbssmtrain (file, no introns)                             : ok
 44: gthbssmtrain (file, introns)                                : ok
 45: gthbssmtrain (stdin, no introns)                            : ok
 46: gthbssmtrain (stdin, introns)                               : ok
 47: gthbssmtrain (short intron)                                 : ok
 48: gthunit                                                     : ok
 49: fastdp 01                                                   : ok
 50: fastdp (U89959)                                             : ok
 51: fastdp (U89959, introncutout)                               : ok
make[2]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
make[1]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
mv bin/bssm debian/bssm
mv bin/gthdata debian/gthdata
dh_auto_install
make[1]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
   dh_install
   dh_installdocs
   dh_installchangelogs
   debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
mkdir -p /build/reproducible-path/genomethreader-1.7.3+dfsg/debian/man
asciidoctor -a docdate='' -b manpage /build/reproducible-path/genomethreader-1.7.3+dfsg/debian/man_src/*.adoc
cp /build/reproducible-path/genomethreader-1.7.3+dfsg/debian/man_src/*.? /build/reproducible-path/genomethreader-1.7.3+dfsg/debian/man
dh_installman --
make[1]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   debian/rules override_dh_gencontrol
make[1]: Entering directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
echo "libvmatch-dev:Version=2.3.1+dfsg-9" >> debian/genomethreader.substvars
dh_gencontrol
make[1]: Leaving directory '/build/reproducible-path/genomethreader-1.7.3+dfsg'
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'genomethreader-dbgsym' in '../genomethreader-dbgsym_1.7.3+dfsg-10_amd64.deb'.
dpkg-deb: building package 'genomethreader' in '../genomethreader_1.7.3+dfsg-10_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../genomethreader_1.7.3+dfsg-10_amd64.buildinfo
 dpkg-genchanges --build=binary -O../genomethreader_1.7.3+dfsg-10_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/2854116 and its subdirectories
I: Current time: Tue Apr  7 21:29:35 -12 2026
I: pbuilder-time-stamp: 1775640575
Thu Mar  6 03:06:37 UTC 2025  I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net.
Thu Mar  6 03:06:37 UTC 2025  I: Preparing to do remote build '2' on infom01-amd64.debian.net.
Thu Mar  6 03:08:47 UTC 2025  I: Deleting $TMPDIR on infom01-amd64.debian.net.
Thu Mar  6 03:08:48 UTC 2025  I: genomethreader_1.7.3+dfsg-10_amd64.changes:
Format: 1.8
Date: Sat, 24 Feb 2024 20:05:30 +0100
Source: genomethreader
Binary: genomethreader genomethreader-dbgsym
Architecture: amd64
Version: 1.7.3+dfsg-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 genomethreader - software tool to compute gene structure predictions
Closes: 1064585
Changes:
 genomethreader (1.7.3+dfsg-10) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Aurelien Jarno ]
   * Make sure package gets accepted even if binNMUed in between
     Closes: #1064585
 .
   [ Andreas Tille ]
   Use secure URI in Homepage field.
Checksums-Sha1:
 eb00b5ef32591050bc62a8d0e0ddcd80aaf1a870 1681168 genomethreader-dbgsym_1.7.3+dfsg-10_amd64.deb
 2a4ac84da3397f3ec5c0774ba00669445767cb5f 7095 genomethreader_1.7.3+dfsg-10_amd64.buildinfo
 0323a1ffd1bbe0a870fbcfa619d884ed021f21a7 2085388 genomethreader_1.7.3+dfsg-10_amd64.deb
Checksums-Sha256:
 a6c1d919250b40750ef97b17c58ccfd49390c9b02efb192c7dc9c5576efea930 1681168 genomethreader-dbgsym_1.7.3+dfsg-10_amd64.deb
 0d7e1f70a96b9dbda33c9320e1aefc890956da790454f43cb8b868d015129efb 7095 genomethreader_1.7.3+dfsg-10_amd64.buildinfo
 1b20a557f96973950c6112ca3ed595605f9516edb3dec9f9fa3fb60d899923c2 2085388 genomethreader_1.7.3+dfsg-10_amd64.deb
Files:
 0f52a2e83839f7a4728eb614d0ffb9ce 1681168 debug optional genomethreader-dbgsym_1.7.3+dfsg-10_amd64.deb
 d58ca8e8291cde7c0277659df39dd0f9 7095 science optional genomethreader_1.7.3+dfsg-10_amd64.buildinfo
 1c27196649730d45a31a794920791721 2085388 science optional genomethreader_1.7.3+dfsg-10_amd64.deb
Thu Mar  6 03:08:49 UTC 2025  I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_38-49517.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3ZpsTNgN/genomethreader_1.7.3+dfsg-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3ZpsTNgN/genomethreader_1.7.3+dfsg-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3ZpsTNgN/genomethreader_1.7.3+dfsg-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3ZpsTNgN/b1/genomethreader_1.7.3+dfsg-10_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3ZpsTNgN/b2/genomethreader_1.7.3+dfsg-10_amd64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile

## main (total time: 0.003s)
       0.003s      2 calls    outputs
       0.000s      1 call     cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 230ms
CPU time consumed: 230ms
Thu Mar  6 03:08:49 UTC 2025  I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Thu Mar  6 03:08:49 UTC 2025  I: genomethreader from unstable built successfully and reproducibly on amd64.
Thu Mar  6 03:08:50 UTC 2025  I: Submitting .buildinfo files to external archives:
Thu Mar  6 03:08:50 UTC 2025  I: Submitting 8.0K	b1/genomethreader_1.7.3+dfsg-10_amd64.buildinfo.asc
Thu Mar  6 03:08:51 UTC 2025  I: Submitting 8.0K	b2/genomethreader_1.7.3+dfsg-10_amd64.buildinfo.asc
Thu Mar  6 03:08:54 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu Mar  6 03:08:54 UTC 2025  I: Done submitting .buildinfo files.
Thu Mar  6 03:08:54 UTC 2025  I: Removing signed genomethreader_1.7.3+dfsg-10_amd64.buildinfo.asc files:
removed './b1/genomethreader_1.7.3+dfsg-10_amd64.buildinfo.asc'
removed './b2/genomethreader_1.7.3+dfsg-10_amd64.buildinfo.asc'