Tue Mar 25 09:25:10 UTC 2025 I: starting to build megahit/unstable/amd64 on jenkins on '2025-03-25 09:25' Tue Mar 25 09:25:10 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/36067/console.log Tue Mar 25 09:25:10 UTC 2025 I: Downloading source for unstable/megahit=1.2.9-5 --2025-03-25 09:25:11-- http://deb.debian.org/debian/pool/main/m/megahit/megahit_1.2.9-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1433 (1.4K) [text/prs.lines.tag] Saving to: ‘megahit_1.2.9-5.dsc’ 0K . 100% 232M=0s 2025-03-25 09:25:11 (232 MB/s) - ‘megahit_1.2.9-5.dsc’ saved [1433/1433] Tue Mar 25 09:25:11 UTC 2025 I: megahit_1.2.9-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: megahit Binary: megahit Architecture: any-amd64 Version: 1.2.9-5 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust , Andreas Tille Homepage: https://github.com/voutcn/megahit Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/megahit Vcs-Git: https://salsa.debian.org/med-team/megahit.git Testsuite: autopkgtest Build-Depends: cmake, debhelper-compat (= 13), dh-python, python3-all, zlib1g-dev Package-List: megahit deb science optional arch=any-amd64 Checksums-Sha1: 41d1f7604f9f15c361a3e8d07ff524c652d94b31 268591 megahit_1.2.9.orig.tar.gz 082ecb63cfcac3e84c3af601cb95c6030b7442f6 8556 megahit_1.2.9-5.debian.tar.xz Checksums-Sha256: 09026eb07cc4e2d24f58b0a13f7a826ae8bb73da735a47cb1cbe6e4693118852 268591 megahit_1.2.9.orig.tar.gz 67dde75e73af0d1f8d4c6e0c1e22435a447c9d9aa032e48f1fafe7cf259b64aa 8556 megahit_1.2.9-5.debian.tar.xz Files: 6ceee7a922a56687599b5aa135a7b155 268591 megahit_1.2.9.orig.tar.gz 7ad6d7debd12fe676dcb20b5781a5809 8556 megahit_1.2.9-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIgEARYIADAWIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZUZ8SBIcbmlsZXNoQGRl Ymlhbi5vcmcACgkQKieQS9ckPtq7lgEAo0GjNB4umeCbzc6a0dxhuOSyEZutSLwC 5HRJbs89hV8A/087b0WbqNCKpX1YQrAYxkTOG/kqaguEG696fCLoIh0J =CGxQ -----END PGP SIGNATURE----- Tue Mar 25 09:25:11 UTC 2025 I: Checking whether the package is not for us Tue Mar 25 09:25:11 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue Mar 25 09:25:11 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Tue Mar 25 09:36:16 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 24 21:25:13 -12 2025 I: pbuilder-time-stamp: 1742894713 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [megahit_1.2.9-5.dsc] I: copying [./megahit_1.2.9.orig.tar.gz] I: copying [./megahit_1.2.9-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./megahit_1.2.9-5.dsc: unsupported subcommand dpkg-source: info: extracting megahit in megahit-1.2.9 dpkg-source: info: unpacking megahit_1.2.9.orig.tar.gz dpkg-source: info: unpacking megahit_1.2.9-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_test_path.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix-gcc13-ftbfs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/508510/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2e80812e3b2748fba6afbd1c67e552df' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='508510' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IaXSjcpC/pbuilderrc_txKj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IaXSjcpC/b1 --logfile b1/build.log megahit_1.2.9-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/508510/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, python3-all, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19807 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 48.5 MB of archives. After unpacking 179 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-1 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-3 [337 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-3 [109 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-3 [43.5 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.13.0~rc2-2 [380 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 67 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250308 [115 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.2-2 [1044 B] Get: 75 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 48.5 MB in 4s (13.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19807 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.0-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_amd64.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... Setting up libexpat1:amd64 (2.7.0-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20141 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-1_all.deb ... Unpacking tzdata (2025b-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_amd64.deb ... Unpacking python3.13 (3.13.2-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21152 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.2-2_amd64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package libproc2-0:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/megahit-1.2.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../megahit_1.2.9-5_source.changes dpkg-buildpackage: info: source package megahit dpkg-buildpackage: info: source version 1.2.9-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Build type: None: -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -- Configuring done (8.4s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/megahit-1.2.9 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-DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/tip_remover.cpp [ 35%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp [ 36%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/tip_remover.cpp [ 37%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/unitig_graph.cpp [ 38%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/unitig_graph.cpp [ 38%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp [ 39%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp [ 41%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp [ 43%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp [ 44%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp [ 45%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp [ 46%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp [ 48%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp [ 50%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp [ 53%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp [ 54%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp [ 55%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp [ 56%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp [ 57%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp [ 57%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp [ 58%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp [ 58%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp [ 59%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp [ 60%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp [ 61%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp [ 62%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp [ 64%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp [ 65%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp [ 66%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmer_counter.cpp [ 67%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp [ 68%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp [ 69%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp [ 70%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp [ 71%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp [ 72%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp [ 74%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp [ 75%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp [ 76%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp [ 77%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25, from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:31:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:38:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:45:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:52:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:59:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:66:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:73:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp [ 79%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 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-D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmer_counter.cpp [ 80%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops 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CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp [ 82%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp [ 83%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp [ 84%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp [ 86%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp [ 87%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp [ 88%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -MF 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/build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp [ 90%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp [ 91%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o /usr/bin/c++ 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp [ 93%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp [ 94%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp [ 94%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp [ 95%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp [ 96%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/filter_by_len.cpp [ 97%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp [ 98%] Linking CXX executable megahit_core /usr/bin/cmake -E cmake_link_script CMakeFiles/megahit_core.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -o megahit_core -lz make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' [ 98%] Built target megahit_core [ 99%] Linking CXX executable megahit_core_popcnt /usr/bin/cmake -E cmake_link_script CMakeFiles/megahit_core_popcnt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function 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CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -o megahit_core_no_hw_accel -lz make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' [100%] Built target megahit_core_no_hw_accel make -f CMakeFiles/megahit.dir/build.make CMakeFiles/megahit.dir/depend make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' make -f CMakeFiles/megahit.dir/build.make CMakeFiles/megahit.dir/build make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' cp /build/reproducible-path/megahit-1.2.9/src/megahit . make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' [100%] Built target megahit make[2]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/megahit/ cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/megahit-1.2.9/debian/megahit AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/megahit-1.2.9 -B/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit_core -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit_core_popcnt -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit_core_no_hw_accel -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit_toolkit -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data -- Installing: 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'/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9' dh_install rm debian/megahit/usr/share/doc/megahit/data/empty.fa make[1]: Leaving directory '/build/reproducible-path/megahit-1.2.9' dh_installdocs dh_installchangelogs dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'megahit-dbgsym' in '../megahit-dbgsym_1.2.9-5_amd64.deb'. dpkg-deb: building package 'megahit' in '../megahit_1.2.9-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../megahit_1.2.9-5_amd64.buildinfo dpkg-genchanges --build=binary -O../megahit_1.2.9-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/508510 and its subdirectories I: Current time: Mon Mar 24 21:36:14 -12 2025 I: pbuilder-time-stamp: 1742895374 Tue Mar 25 09:36:17 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Mar 25 09:36:17 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Mar 25 09:38:34 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Mar 25 09:38:34 UTC 2025 I: megahit_1.2.9-5_amd64.changes: Format: 1.8 Date: Sat, 04 Nov 2023 22:39:56 +0530 Source: megahit Binary: megahit megahit-dbgsym Architecture: amd64 Version: 1.2.9-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: megahit - ultra-fast and memory-efficient meta-genome assembler Closes: 1054672 Changes: megahit (1.2.9-5) unstable; urgency=medium . * Team Upload. * Add patch to fix FTBFS with gcc-13 (Closes: #1054672) * Bump Standards-Version to 4.6.2 (no changes needed) Checksums-Sha1: b16dc4f4b0781098f71de7009c77713e4791f185 18742684 megahit-dbgsym_1.2.9-5_amd64.deb ab2866330b8cf9c4fd940fe7bd0f016a589ebd63 6320 megahit_1.2.9-5_amd64.buildinfo 3ad3a0ddbffad4ef993be96151c00aa4e108073c 1138620 megahit_1.2.9-5_amd64.deb Checksums-Sha256: e43ce2f55b66ff9b86fd50026e2e81980b9d83db0725266522829ea916d84afc 18742684 megahit-dbgsym_1.2.9-5_amd64.deb d6ed02a8544c837ada90037fe2e609a38d9cea4280237015085fb2bc5701b8a6 6320 megahit_1.2.9-5_amd64.buildinfo b0a0660136c0a6cd55b98e2daa94033420bc78b24abddd45d1d81740f3bf65f0 1138620 megahit_1.2.9-5_amd64.deb Files: d3584b3b971dc5567fbcd3c6f512427c 18742684 debug optional megahit-dbgsym_1.2.9-5_amd64.deb 7b8430991d4817957f6b779ab29f3644 6320 science optional megahit_1.2.9-5_amd64.buildinfo e554a6a6d53fb44707e44aa4f7c8f4d4 1138620 science optional megahit_1.2.9-5_amd64.deb Tue Mar 25 09:38:35 UTC 2025 I: diffoscope 291 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_29-36067.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IaXSjcpC/megahit_1.2.9-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IaXSjcpC/megahit_1.2.9-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IaXSjcpC/megahit_1.2.9-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IaXSjcpC/b1/megahit_1.2.9-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IaXSjcpC/b2/megahit_1.2.9-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 226ms CPU time consumed: 227ms Tue Mar 25 09:38:36 UTC 2025 I: diffoscope 291 found no differences in the changes files, and a .buildinfo file also exists. Tue Mar 25 09:38:36 UTC 2025 I: megahit from unstable built successfully and reproducibly on amd64. Tue Mar 25 09:38:37 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Mar 25 09:38:37 UTC 2025 I: Submitting 8.0K b1/megahit_1.2.9-5_amd64.buildinfo.asc Tue Mar 25 09:38:38 UTC 2025 I: Submitting 8.0K b2/megahit_1.2.9-5_amd64.buildinfo.asc Tue Mar 25 09:38:39 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Mar 25 09:38:39 UTC 2025 I: Done submitting .buildinfo files. Tue Mar 25 09:38:39 UTC 2025 I: Removing signed megahit_1.2.9-5_amd64.buildinfo.asc files: removed './b1/megahit_1.2.9-5_amd64.buildinfo.asc' removed './b2/megahit_1.2.9-5_amd64.buildinfo.asc'