Wed Apr 2 02:01:37 UTC 2025 I: starting to build promod3/unstable/amd64 on jenkins on '2025-04-02 02:01' Wed Apr 2 02:01:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/51570/console.log Wed Apr 2 02:01:37 UTC 2025 I: Downloading source for unstable/promod3=3.4.2+ds-1 --2025-04-02 02:01:37-- http://deb.debian.org/debian/pool/main/p/promod3/promod3_3.4.2%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3240 (3.2K) [text/prs.lines.tag] Saving to: ‘promod3_3.4.2+ds-1.dsc’ 0K ... 100% 272M=0s 2025-04-02 02:01:37 (272 MB/s) - ‘promod3_3.4.2+ds-1.dsc’ saved [3240/3240] Wed Apr 2 02:01:37 UTC 2025 I: promod3_3.4.2+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: promod3 Binary: libpromod3-core-dev, libpromod3-core3.4, libpromod3-loop-dev, libpromod3-loop3.4, libpromod3-modelling-dev, libpromod3-modelling3.4, libpromod3-scoring-dev, libpromod3-scoring3.4, libpromod3-sidechain-dev, libpromod3-sidechain3.4, promod3, promod3-data, python3-promod3 Architecture: any all Version: 3.4.2+ds-1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://openstructure.org/promod3/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/debichem-team/promod3 Vcs-Git: https://salsa.debian.org/debichem-team/promod3.git Build-Depends: cmake, debhelper-compat (= 13), dh-python, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-python-dev, libboost-test-dev, libeigen3-dev, libost-base-dev, libost-conop-dev, libost-geom-dev, libost-img-dev, libost-info-dev, libost-io-dev, libost-mol-alg-dev, libost-mol-dev, libost-mol-mm-dev, libost-seq-alg-dev, libost-seq-dev, libsqlite3-dev, openstructure (>= 2.5.0), python3-dev, python3-ost Package-List: libpromod3-core-dev deb libdevel optional arch=any libpromod3-core3.4 deb libs optional arch=any libpromod3-loop-dev deb libdevel optional arch=any libpromod3-loop3.4 deb libs optional arch=any libpromod3-modelling-dev deb libdevel optional arch=any libpromod3-modelling3.4 deb libs optional arch=any libpromod3-scoring-dev deb libdevel optional arch=any libpromod3-scoring3.4 deb libs optional arch=any libpromod3-sidechain-dev deb libdevel optional arch=any libpromod3-sidechain3.4 deb libs optional arch=any promod3 deb science optional arch=all promod3-data deb science optional arch=all python3-promod3 deb python optional arch=any Checksums-Sha1: fe26d94587be71b7fb6ccc240ad859fac92c81fb 398726492 promod3_3.4.2+ds.orig.tar.xz 957992a7723d0725c56268d9d25b608b36644180 5884 promod3_3.4.2+ds-1.debian.tar.xz Checksums-Sha256: 7a46576b3c73bceaba25b36b10be9b3fc5ef4bdbc1a957d01c7c68eae76dc1b1 398726492 promod3_3.4.2+ds.orig.tar.xz eeee3ec35d048e7fd7cbe8022cf25289d40772ecd89f197a6e30b7182523191f 5884 promod3_3.4.2+ds-1.debian.tar.xz Files: 47857c7c2a40f7ac9798956b6a601c3d 398726492 promod3_3.4.2+ds.orig.tar.xz bbcb4746ab7c2a9e997d04feff944be5 5884 promod3_3.4.2+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmfrtxASHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHuWMP/iOF/ZMsDErNcI3c3OOYXeiFFQMcAE/W gJ1H40Qk9nUeRf6scL6mn4TREKJ5a6DOT1jyuJvgl4P4q1398OA5zIay6Qv68dS/ f4JLO+eu0I/zzn34bPh1LKDwjLDkSeMqBFzBz+f7VIfBjXgj84Dxxk+5ZcC26QsS iFrqFX1fb6y9+/eDalk8bdZLlsUvU/FCP/gUMZeGlPO77gcnY7ACrqeLC45pTAJ5 tQyejwrs/Ogl6KWtxmNa/QVIDqGWQIJxiFjkVT6zszNRC25q4n3nOxitl4AgtQ0T ccLzaB1WH01xwcg2aDs1bqXsm9ebX8oxgi4N+7ccprEQtC2eOuwt9xBBRHi32jvu SjPJdgJHkmnSzWmb3Av9KG2/74w85qVrrV/pTM4CXT6CSrtxI5IlXpIIYMfy8ypC CUOsuiRRPerkhkK9Bskd+pmDIJG/+ewNXnCqxjVBksjdPPOwhg35EFfCvfWQ0YMB TbVw4SZcvJzwvsLrUcooWetZv4OKj+ak2nfAFWCJqAGGPdSpRPfbVPlYI8gvqBF0 vESGB+4C6dzoivJnrmWzqKtQhAiunzmDLwZwHh/clKCVQHwCYRAYhRfK/LIP6ry5 UW4qNx08eCFWi38qIAhytI18z90lpDAM7a6T/gsskcu15ZM/MA8q7ZbMNOs+eV36 OH3gi8YDkZlR =2u1I -----END PGP SIGNATURE----- Wed Apr 2 02:01:37 UTC 2025 I: Checking whether the package is not for us Wed Apr 2 02:01:37 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Apr 2 02:01:37 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Apr 2 02:50:53 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 1 14:01:48 -12 2025 I: pbuilder-time-stamp: 1743559308 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [promod3_3.4.2+ds-1.dsc] I: copying [./promod3_3.4.2+ds.orig.tar.xz] I: copying [./promod3_3.4.2+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./promod3_3.4.2+ds-1.dsc: unsupported subcommand dpkg-source: info: extracting promod3 in promod3-3.4.2+ds dpkg-source: info: unpacking promod3_3.4.2+ds.orig.tar.xz dpkg-source: info: unpacking promod3_3.4.2+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find-OST.patch dpkg-source: info: applying add-python3-shebangs.patch dpkg-source: info: applying promod-executable.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/899332/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6a35ccae22424094aeb13524a2e22d36' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='899332' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pBMlAM1B/pbuilderrc_U26K --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pBMlAM1B/b1 --logfile b1/build.log promod3_3.4.2+ds-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/899332/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-python-dev, libboost-test-dev, libeigen3-dev, libost-base-dev, libost-conop-dev, libost-geom-dev, libost-img-dev, libost-info-dev, libost-io-dev, libost-mol-alg-dev, libost-mol-dev, libost-mol-mm-dev, libost-seq-alg-dev, libost-seq-dev, libsqlite3-dev, openstructure (>= 2.5.0), python3-dev, python3-ost dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19804 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-base-dev; however: Package libost-base-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-conop-dev; however: Package libost-conop-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-geom-dev; however: Package libost-geom-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-img-dev; however: Package libost-img-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-info-dev; however: Package libost-info-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-io-dev; however: Package libost-io-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-mol-alg-dev; however: Package libost-mol-alg-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-mol-dev; however: Package libost-mol-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-mol-mm-dev; however: Package libost-mol-mm-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-seq-alg-dev; however: Package libost-seq-alg-dev is not installed. pbuilder-satisfydepends-dummy depends on libost-seq-dev; however: Package libost-seq-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on openstructure (>= 2.5.0); however: Package openstructure is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ost; however: Package python3-ost is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgcrypt20{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglib2.0-0t64{a} libglu1-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libimagequant0{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libnghttp2-14{a} libnghttp3-9{a} libopengl0{a} libopenjp2-7{a} libopenmm8.1{a} libost-base-dev{a} libost-base2.9{a} libost-bindings2.9{a} libost-conop-dev{a} libost-conop2.9{a} libost-db2.9{a} libost-geom-dev{a} libost-geom2.9{a} libost-gfx2.9{a} libost-gui2.9{a} libost-img-alg2.9{a} libost-img-dev{a} libost-img2.9{a} libost-info-dev{a} libost-info2.9{a} libost-io-dev{a} libost-io2.9{a} libost-mol-alg-dev{a} libost-mol-alg2.9{a} libost-mol-dev{a} libost-mol-mm-dev{a} libost-mol-mm2.9{a} libost-mol2.9{a} libost-seq-alg-dev{a} libost-seq-alg2.9{a} libost-seq-dev{a} libost-seq2.9{a} libp11-kit0{a} libparasail8{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libraqm0{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libsqlite3-dev{a} libssh2-1t64{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libz3-4{a} libzopfli1{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} openstructure{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-attr{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-fs{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-ost{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-platformdirs{a} python3-pyparsing{a} python3-pyqt5{a} python3-pyqt5.sip{a} python3-scipy{a} python3-sympy{a} python3-tk{a} python3-ufolib2{a} python3-unicodedata2{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libcifpp-data libglib2.0-data libgpg-error-l10n libldap-common libltdl-dev libmail-sendmail-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pooch python3-yaml qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 300 newly installed, 0 to remove and 0 not upgraded. Need to get 339 MB of archives. After unpacking 1243 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-3 [861 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-3 [2212 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-1 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-3 [1952 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-3 [746 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [138 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5084 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-4 [337 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-4 [109 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-4 [43.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.2 [318 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.2 [391 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 58 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 65 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.13.0~rc3-1 [380 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 91 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250308 [115 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2.2 [463 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-3 [215 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-16 [112 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4.2 [234 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4.2 [236 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4.2 [282 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-4.2 [231 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-4.2 [232 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4.2 [297 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 114 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-3 [10.8 MB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 119 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.2 [347 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.2 [375 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 122 http://deb.debian.org/debian unstable/main amd64 libboost-python1.83.0 amd64 1.83.0-4.2 [306 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.2-3 [2158 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-1 [161 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.2-3 [5015 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.2-2 [10.3 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.2-3 [506 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.2-2 [26.1 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libboost-python1.83-dev amd64 1.83.0-4.2 [328 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B] Get: 135 http://deb.debian.org/debian unstable/main amd64 libboost-test1.83.0 amd64 1.83.0-4.2 [471 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libboost-test1.83-dev amd64 1.83.0-4.2 [541 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libboost-test-dev amd64 1.83.0.2+b2 [3628 B] Get: 138 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.2 [270 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.10-2+b1 [251 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.3.1-1 [41.8 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.124-2 [8288 B] Get: 143 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.124-2 [64.1 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-3 [26.0 MB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 mesa-libgallium amd64 25.0.2-1 [9624 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 25.0.2-1 [44.1 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 25.0.2-1 [128 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libevdev2 amd64 1.13.4+dfsg-1 [32.4 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.4.309.0-1 [130 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 25.0.2-1 [45.6 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 25.0.2-1 [142 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.0-2 [1513 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b3 [184 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-6 [14.5 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.14.0-1 [103 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.14.0-1 [25.3 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.27.1-1 [26.0 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.7-1 [22.6 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.27.1-1 [135 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libopenmm8.1 amd64 8.1.2+dfsg-11 [1059 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libost-base2.9 amd64 2.9.3-1 [34.9 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libost-base-dev amd64 2.9.3-1 [29.0 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libost-geom2.9 amd64 2.9.3-1 [66.4 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libost-mol2.9 amd64 2.9.3-1 [395 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libqt5core5t64 amd64 5.15.15+dfsg-5 [1872 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libqt5xml5t64 amd64 5.15.15+dfsg-5 [126 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libost-info2.9 amd64 2.9.3-1 [167 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libost-seq2.9 amd64 2.9.3-1 [91.0 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libost-bindings2.9 amd64 2.9.3-1 [204 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libost-conop2.9 amd64 2.9.3-1 [189 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 libost-conop-dev amd64 2.9.3-1 [23.4 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libost-db2.9 amd64 2.9.3-1 [45.7 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libost-geom-dev amd64 2.9.3-1 [30.0 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libost-img2.9 amd64 2.9.3-1 [144 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libost-img-alg2.9 amd64 2.9.3-1 [170 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libost-gfx2.9 amd64 2.9.3-1 [432 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libost-mol-alg2.9 amd64 2.9.3-1 [370 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-2 [345 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libost-io2.9 amd64 2.9.3-1 [883 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libparasail8 amd64 2.6.2+dfsg-2 [1890 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libost-seq-alg2.9 amd64 2.9.3-1 [255 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-5 [217 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libqt5network5t64 amd64 5.15.15+dfsg-5 [682 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.1-1 [23.5 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [16.7 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.10-1 [18.4 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.42-1 [790 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [16.2 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.15+dfsg-5 [3497 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-5 [2398 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libost-gui2.9 amd64 2.9.3-1 [508 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libost-img-dev amd64 2.9.3-1 [44.6 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libost-info-dev amd64 2.9.3-1 [21.8 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libost-io-dev amd64 2.9.3-1 [53.4 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libost-mol-alg-dev amd64 2.9.3-1 [32.6 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libost-mol-dev amd64 2.9.3-1 [59.3 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libost-mol-mm2.9 amd64 2.9.3-1 [298 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libost-mol-mm-dev amd64 2.9.3-1 [29.7 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libost-seq-alg-dev amd64 2.9.3-1 [179 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libost-seq-dev amd64 2.9.3-1 [25.9 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libqt5designer5 amd64 5.15.15-6 [2758 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libqt5sql5t64 amd64 5.15.15+dfsg-5 [125 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libqt5help5 amd64 5.15.15-6 [151 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-5 [206 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libqt5test5t64 amd64 5.15.15+dfsg-5 [151 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libsqlite3-dev amd64 3.46.1-2 [1107 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.1+dfsg1-2 [2736 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.2-3 [107 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.2-1 [9516 B] Get: 275 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.1-1+b1 [1288 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.2-7 [16.3 MB] Get: 286 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b4 [299 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.55.8-1 [1436 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-2 [23.8 MB] Get: 297 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5.sip amd64 12.17.0-1+b1 [61.6 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5 amd64 5.15.11+dfsg-2 [2508 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 python3-ost amd64 2.9.3-1 [3992 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 openstructure amd64 2.9.3-1 [93.1 MB] Fetched 339 MB in 12s (28.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19804 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-3_amd64.deb ... Unpacking python3.13-minimal (3.13.2-3) ... Setting up libpython3.13-minimal:amd64 (3.13.2-3) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.2-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20138 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-1_all.deb ... Unpacking tzdata (2025b-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-3_amd64.deb ... Unpacking python3.13 (3.13.2-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21149 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.2-2_amd64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_14.2.0-19_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-19) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... Unpacking python3-numpy (1:2.2.3+ds-5) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../006-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. 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Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.7-3) ... Setting up libwayland-server0:amd64 (1.23.1-3) ... Setting up libx11-xcb1:amd64 (2:1.8.12-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-4) ... Setting up fontconfig-config (2.15.0-2.2) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libavahi-common3:amd64 (0.8-16) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libboost-test1.83-dev:amd64 (1.83.0-4.2) ... 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Setting up python3.13 (3.13.2-3) ... Setting up libwacom9:amd64 (2.14.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up libdrm-intel1:amd64 (2.4.124-2) ... Setting up libost-mol-dev (2.9.3-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.2-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.2-3) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up libinput-bin (1.27.1-1) ... Setting up libost-conop-dev (2.9.3-1) ... Setting up python3-fs (2.4.16-7) ... Setting up libqt5core5t64:amd64 (5.15.15+dfsg-5) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up libpython3.13-dev:amd64 (3.13.2-3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-4.2) ... Setting up python3-numpy (1:2.2.3+ds-5) ... Setting up python3-pyqt5.sip (12.17.0-1+b1) ... Setting up python3-lxml:amd64 (5.3.1-1+b1) ... Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-5) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-1+b1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up libcups2t64:amd64 (2.4.10-2+b1) ... Setting up dh-python (6.20250308) ... Setting up libinput10:amd64 (1.27.1-1) ... Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.3.0-1) ... Setting up mesa-libgallium:amd64 (25.0.2-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-5) ... Setting up python3-scipy (1.15.2-7) ... Setting up libpython3-dev:amd64 (3.13.2-2) ... Setting up libcurl4t64:amd64 (8.13.0~rc3-1) ... 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Setting up libglx-mesa0:amd64 (25.0.2-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up libost-info-dev (2.9.3-1) ... Setting up libost-seq2.9 (2.9.3-1) ... Setting up libost-img2.9 (2.9.3-1) ... Setting up libost-seq-dev (2.9.3-1) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up libost-img-alg2.9 (2.9.3-1) ... Setting up libost-seq-alg2.9 (2.9.3-1) ... Setting up libost-bindings2.9 (2.9.3-1) ... Setting up libost-db2.9 (2.9.3-1) ... Setting up libost-img-dev (2.9.3-1) ... Setting up libost-mol-alg2.9 (2.9.3-1) ... Setting up libost-seq-alg-dev (2.9.3-1) ... Setting up libost-gfx2.9 (2.9.3-1) ... Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-5) ... Setting up libost-mol-alg-dev (2.9.3-1) ... Setting up libost-io2.9 (2.9.3-1) ... Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-5) ... Setting up libost-mol-mm2.9 (2.9.3-1) ... Setting up libost-mol-mm-dev (2.9.3-1) ... Setting up libqt5help5:amd64 (5.15.15-6) ... Setting up libost-gui2.9 (2.9.3-1) ... Setting up libost-io-dev (2.9.3-1) ... Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-5) ... Setting up libqt5designer5:amd64 (5.15.15-6) ... Setting up python3-pyqt5 (5.15.11+dfsg-2) ... Setting up python3-fonttools (4.55.8-1) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-2) ... Setting up python3-ost (2.9.3-1) ... Setting up openstructure (2.9.3-1) ... Building compounds library, this may take a while... 0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ Processing triggers for libc-bin (2.41-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/promod3-3.4.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../promod3_3.4.2+ds-1_source.changes dpkg-buildpackage: info: source package promod3 dpkg-buildpackage: info: source version 3.4.2+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds' dh_auto_configure -- \ -DOPTIMIZE=ON -DDISABLE_DOCUMENTATION=ON -DOST_ROOT=/usr -DCOMPOUND_LIB=/var/cache/openstructure/compounds.chemlib cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DOPTIMIZE=ON -DDISABLE_DOCUMENTATION=ON -DOST_ROOT=/usr -DCOMPOUND_LIB=/var/cache/openstructure/compounds.chemlib .. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning (dev) at CMakeLists.txt:58 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done CMake Warning (dev) at cmake_support/PROMOD3.cmake:980 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:997 (get_compiler_version) CMakeLists.txt:87 (setup_compiler_flags) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Python: /usr/bin/python3 (found suitable version "3.13.2", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed CMake Warning (dev) at cmake_support/PROMOD3.cmake:1029 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost package: python313 CMake Warning (dev) at cmake_support/PROMOD3.cmake:1043 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: unit_test_framework CMake Warning (dev) at cmake_support/PROMOD3.cmake:1050 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: filesystem system CMake Warning (dev) at cmake_support/PROMOD3.cmake:1054 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: iostreams CMake Warning (dev) at cmake_support/PROMOD3.cmake:1057 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: program_options CMake Warning (dev) at cmake_support/PROMOD3.cmake:1060 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:98 (setup_boost) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.3.0") CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): config/src/CMakeLists.txt:8 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:593 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): core/init/CMakeLists.txt:9 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) core/src/CMakeLists.txt:33 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): core/pymod/CMakeLists.txt:15 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) core/tests/CMakeLists.txt:41 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) loop/src/CMakeLists.txt:52 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): loop/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) loop/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): loop/pymod/CMakeLists.txt:21 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) loop/tests/CMakeLists.txt:33 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) scoring/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): scoring/pymod/CMakeLists.txt:16 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) scoring/pymod/CMakeLists.txt:16 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): scoring/pymod/CMakeLists.txt:16 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) scoring/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) scoring/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) scoring/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) sidechain/src/CMakeLists.txt:56 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): sidechain/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) sidechain/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): sidechain/pymod/CMakeLists.txt:22 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) sidechain/tests/CMakeLists.txt:11 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:315 (copy_if_different) cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:292 (stage_and_install_headers) modelling/src/CMakeLists.txt:50 (module) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:641 (copy_if_different) modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install): Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run "cmake --help-policy CMP0177" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modelling/pymod/CMakeLists.txt:35 (pymod) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) modelling/tests/CMakeLists.txt:76 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:464 (copy_if_different) scripts/CMakeLists.txt:12 (script) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): scripts/CMakeLists.txt:15 (copy_if_different) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) actions/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) actions/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:724 (copy_if_different) actions/tests/CMakeLists.txt:14 (promod3_unittest) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:1230 (copy_if_different) actions/CMakeLists.txt:6 (pm_action) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:1230 (copy_if_different) actions/CMakeLists.txt:7 (pm_action) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:1230 (copy_if_different) actions/CMakeLists.txt:8 (pm_action) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): cmake_support/PROMOD3.cmake:1230 (copy_if_different) actions/CMakeLists.txt:9 (pm_action) This warning is for project developers. Use -Wno-dev to suppress it. -- ProMod3 will be built with the following options: OpenStructure (-DOST_ROOT) : /usr Compound library (-DCOMPOUND_LIB): /var/cache/openstructure/compounds.chemlib Optimized (-DOPTIMIZE) : ON Python : /usr/bin/python3 Eigen3 : /usr/include/eigen3 -- Configuring done (7.0s) -- Generating done (0.7s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds' dh_auto_build cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/promod3-3.4.2+ds -B/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/depend make -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/modelling_pymod.dir/DependInfo.cmake "--color=" make -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" make -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/depend make -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/core_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/config/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src/CMakeFiles/config_header.dir/DependInfo.cmake "--color=" make -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/loop_pymod.dir/DependInfo.cmake "--color=" make -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/scoring_pymod.dir/DependInfo.cmake "--color=" make -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/sidechain_pymod.dir/DependInfo.cmake "--color=" make -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/__init__.py make -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init___init__.py_pymod.dir/DependInfo.cmake "--color=" make -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/__init__.py make -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src/config.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/config.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 make -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data_dir.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/scoring/__init__.py make -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/loop/__init__.py make -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data_dir.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/depend cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data_dir.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_pm.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_closegaps.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_closegaps.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/helper.py make -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/sidechain/__init__.py make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend [ 1%] Generating ../../stage/lib64/python3.13/site-packages/promod3/__init__.py make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/core/init/__init__.py.in -DOUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/__init__.py -DOST_COMPOUNDS_CHEMLIB_PATH="\"/var/cache/openstructure/compounds.chemlib\"" -DOST_ROOT=/usr -DPROMOD3_VERSION_STRING=3.4.2 -DGIT_BRANCH= -DGIT_COMMIT_HASH= -P /build/reproducible-path/promod3-3.4.2+ds/cmake_support/substitute.cmake make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f extras/CMakeFiles/bash-completion.dir/build.make extras/CMakeFiles/bash-completion.dir/depend cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_molprobity.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_molprobity.py make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/extras /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/extras /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/extras/CMakeFiles/bash-completion.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target config_header make -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/build cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3 cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/pm3argparse.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/pm3argparse.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_pipeline.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_pipeline.py make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/scripts/pm.in -DOUT_FILE=pm -DOST_ROOT="/usr" -DLIBDIR=lib64 -DLIBEXECPATH=libexec/promod3 -DPYTHON_MODULE_PATH=python3.13/site-packages/ -DOST_PYMOD_PATH=/usr/lib/python3/dist-packages -DPython_EXECUTABLE=/usr/bin/python3 -P /build/reproducible-path/promod3-3.4.2+ds/cmake_support/substitute.cmake make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests [ 1%] Built target scoring_pymod [ 1%] Built target loop_data_dir cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_ring_punches.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_ring_punches.py make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target loop_pymod make -f extras/CMakeFiles/bash-completion.dir/build.make extras/CMakeFiles/bash-completion.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target scoring_data_dir make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target subst_pm [ 1%] Built target sidechain_pymod [ 1%] Generating ../stage/etc/bash_completion.d/pm-completion.bash cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/extras && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/extras/pm-completion.bash.in -DOUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/etc/bash_completion.d/pm-completion.bash -DPM3_ACTION_NAMES=build-model\ build-rawmodel\ help\ build-sidechains -P /build/reproducible-path/promod3-3.4.2+ds/cmake_support/substitute.cmake [ 1%] Built target create_stage make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-model /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-model [ 1%] Built target init___init__.py_pymod cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_denovo.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_denovo.py make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/depend [ 1%] Built target sidechain_data_dir make -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core_headers.dir/DependInfo.cmake "--color=" make -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/depend make -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop_headers.dir/DependInfo.cmake "--color=" [ 1%] Built target bash-completion make -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_fragger_handle.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_fragger_handle.py make -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-rawmodel /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-rawmodel make -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/depend make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./check_io.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./check_io.hh [ 1%] Built target core_pymod make -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/promod3_scripts.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./all_atom_env.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_env.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./bb_dep_rotamer_lib.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./bb_dep_rotamer_lib.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_reconstruct_sidechains.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_reconstruct_sidechains.py make -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./cluster.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./cluster.hh make -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'core/init/CMakeFiles/init_pymod.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./extension_scheme.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./extension_scheme.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-help /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-help make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different pm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin/pm cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./disulfid.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./disulfid.hh make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./backbone_score_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_score_base.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./all_atom_positions.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_positions.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-sidechains /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-sidechains cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./dynamic_spatial_organizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./dynamic_spatial_organizer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_monte_carlo.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_monte_carlo.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/pm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin/pm cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./backbone_overall_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_overall_scorer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./amino_acid_atoms.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./amino_acid_atoms.hh [ 1%] Built target init_pymod cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./export_helper.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./export_helper.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./frame.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./frame.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_mhandle_helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_mhandle_helper.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./gap.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_graph.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_graph.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./geom_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_base.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_alignment_fiddling.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_alignment_fiddling.py make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./backbone.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./backbone.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./scoring_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scoring_object_loader.hh [ 1%] Built target actions cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./gap_extender.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap_extender.hh [ 1%] Built target promod3_scripts cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./geom_stems.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_stems.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./bb_trace_param.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./bb_trace_param.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cbeta_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_raw_model.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_raw_model.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle_scoring_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring_base.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./model.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./model.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./data_bag.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./data_bag.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./message.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./message.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_planar_rings.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_planar_rings.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./all_atom_relaxer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./all_atom_relaxer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cb_packing_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cb_packing_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_data_sink.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_sink.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./backbone_relaxer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./backbone_relaxer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl4_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_hash_table.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_hash_table.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_afdb_modelling.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_afdb_modelling.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cbeta_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./ccd.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./ccd.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_data_source.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_source.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./reduced_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./kic.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./kic.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_serializer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_serializer.hh [ 1%] Built target modelling_pymod cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./loop_candidate.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./loop_candidate.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./reduced_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl3_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./runtime_profiling.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./runtime_profiling.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./clash_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./superpose.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./superpose.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./clash_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./vina_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_closer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_closer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./enumerator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./enumerator.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./density_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./density_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./density_creator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./density_creator.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_cooler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_cooler.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./graph.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./forcefield_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./forcefield_lookup.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./hbond_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./tree.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tree.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_sampler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_sampler.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./frag_db.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./frag_db.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./tetrahedral_polytope.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tetrahedral_polytope.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./hbond_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_scorer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./fragger.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./fragger.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./ss_agreement_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./graph_minimizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph_minimizer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_cruncher.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_cruncher.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./hydrogen_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_density.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_density.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./rigid_blocks.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./rigid_blocks.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./ss_agreement_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./eigen_types.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./eigen_types.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./hydrogen_rule_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_rule_lookup.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./torsion_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./torsion_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_group.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_group.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./score_container.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./score_container.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./idx_handler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./idx_handler.hh [ 1%] Built target promod3_core_headers make -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./loop_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./loop_object_loader.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./scoring_weights.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./scoring_weights.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_id.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_id.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./mm_system_creator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./mm_system_creator.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./pairwise_scoring_function.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_scoring_function.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/build cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib_entry.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_entry.hh make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./sidechain_reconstructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_reconstructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./psipred_prediction.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./psipred_prediction.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib_reader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_reader.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./sidechain_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./pairwise_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_score.hh [ 1%] Building CXX object core/src/CMakeFiles/promod3_core.dir/superpose.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/superpose.cc.o -MF CMakeFiles/promod3_core.dir/superpose.cc.o.d -o CMakeFiles/promod3_core.dir/superpose.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/superpose.cc [ 1%] Building CXX object core/src/CMakeFiles/promod3_core.dir/cluster.cc.o [ 2%] Building CXX object core/src/CMakeFiles/promod3_core.dir/geom_stems.cc.o [ 4%] Building CXX object core/src/CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/cluster.cc.o -MF CMakeFiles/promod3_core.dir/cluster.cc.o.d -o CMakeFiles/promod3_core.dir/cluster.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/cluster.cc [ 4%] Building CXX object core/src/CMakeFiles/promod3_core.dir/geom_base.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/geom_stems.cc.o -MF CMakeFiles/promod3_core.dir/geom_stems.cc.o.d -o CMakeFiles/promod3_core.dir/geom_stems.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/geom_stems.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./stem_geom.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./stem_geom.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/geom_base.cc.o -MF CMakeFiles/promod3_core.dir/geom_base.cc.o.d -o CMakeFiles/promod3_core.dir/geom_base.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/geom_base.cc [ 5%] Building CXX object core/src/CMakeFiles/promod3_core.dir/graph.cc.o [ 4%] Building CXX object core/src/CMakeFiles/promod3_core.dir/tree.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/graph.cc.o -MF CMakeFiles/promod3_core.dir/graph.cc.o.d -o CMakeFiles/promod3_core.dir/graph.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/graph.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./sidechain_connector.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_connector.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/tree.cc.o -MF CMakeFiles/promod3_core.dir/tree.cc.o.d -o CMakeFiles/promod3_core.dir/tree.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/tree.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o -MF CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o.d -o CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/tetrahedral_polytope.cc [ 5%] Building CXX object core/src/CMakeFiles/promod3_core.dir/graph_minimizer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./motif_finder.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./motif_finder.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/graph_minimizer.cc.o -MF CMakeFiles/promod3_core.dir/graph_minimizer.cc.o.d -o CMakeFiles/promod3_core.dir/graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/graph_minimizer.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./constraint_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./constraint_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./sidechain_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_object_loader.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./structure_db.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_score_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_score_base.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./robin_hood.h /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./robin_hood.h cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./torsion_sampler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./torsion_sampler.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./afdb.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./afdb.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_overall_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_overall_scorer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./ushort_vec.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./ushort_vec.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lookup.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./sidechain_atom_rule_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_rule_lookup.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl4_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./sidechain_atom_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_constructor.hh [ 5%] Built target promod3_modelling_headers cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_interaction_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_interaction_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl3_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./structure_db_custom_types.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db_custom_types.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_packing_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_packing_score.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./vina_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_rotamer_constructor.hh [ 5%] Built target promod3_loop_headers cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_clash_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_clash_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./subrotamer_optimizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./subrotamer_optimizer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./scwrl3_energy_functions.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scwrl3_energy_functions.hh make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 5%] Built target promod3_scoring_headers [ 5%] Built target promod3_sidechain_headers [ 5%] Linking CXX shared library ../../stage/lib64/libpromod3_core.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_core.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_core.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_core.so.3.4 -o ../../stage/lib64/libpromod3_core.so.3.4.2 CMakeFiles/promod3_core.dir/cluster.cc.o CMakeFiles/promod3_core.dir/geom_base.cc.o CMakeFiles/promod3_core.dir/geom_stems.cc.o CMakeFiles/promod3_core.dir/superpose.cc.o CMakeFiles/promod3_core.dir/graph.cc.o CMakeFiles/promod3_core.dir/tree.cc.o CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o CMakeFiles/promod3_core.dir/graph_minimizer.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_core.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4 ../../stage/lib64/libpromod3_core.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 5%] Built target promod3_core make -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/_core.dir/DependInfo.cmake "--color=" make -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 5%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o [ 7%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/all_atom_env.cc.o [ 7%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_geom.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/all_atom_env.cc.o -MF CMakeFiles/promod3_loop.dir/all_atom_env.cc.o.d -o CMakeFiles/promod3_loop.dir/all_atom_env.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/all_atom_env.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/pymod/CMakeFiles/_core.dir/export_geom.cc.o -MF CMakeFiles/_core.dir/export_geom.cc.o.d -o CMakeFiles/_core.dir/export_geom.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/pymod/export_geom.cc [ 8%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/amino_acid_atoms.cc.o [ 9%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/density_creator.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o -MF CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o.d -o CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/all_atom_positions.cc [ 9%] Building CXX object core/pymod/CMakeFiles/_core.dir/wrap_core.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes 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core/pymod/CMakeFiles/_core.dir/wrap_core.cc.o -MF CMakeFiles/_core.dir/wrap_core.cc.o.d -o CMakeFiles/_core.dir/wrap_core.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/pymod/wrap_core.cc [ 11%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_graph_minimizer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC 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core/pymod/CMakeFiles/_core.dir/export_graph_minimizer.cc.o -MF CMakeFiles/_core.dir/export_graph_minimizer.cc.o.d -o CMakeFiles/_core.dir/export_graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/pymod/export_graph_minimizer.cc [ 11%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o [ 11%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o [ 11%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_runtime_profiling.cc.o [ 11%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/backbone.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/forcefield_lookup.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/pymod/CMakeFiles/_core.dir/export_runtime_profiling.cc.o -MF CMakeFiles/_core.dir/export_runtime_profiling.cc.o.d -o CMakeFiles/_core.dir/export_runtime_profiling.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/pymod/export_runtime_profiling.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/backbone.cc.o -MF CMakeFiles/promod3_loop.dir/backbone.cc.o.d -o CMakeFiles/promod3_loop.dir/backbone.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/backbone.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o -MF CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o.d -o CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/bb_trace_param.cc [ 12%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/frag_db.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/frag_db.cc.o -MF CMakeFiles/promod3_loop.dir/frag_db.cc.o.d -o CMakeFiles/promod3_loop.dir/frag_db.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/frag_db.cc [ 12%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/fragger.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/fragger.cc.o -MF CMakeFiles/promod3_loop.dir/fragger.cc.o.d -o CMakeFiles/promod3_loop.dir/fragger.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/fragger.cc [ 12%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o -MF CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o.d -o CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/hydrogen_constructor.cc [ 12%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/idx_handler.cc.o [ 14%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/hydrogen_rule_lookup.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/idx_handler.cc.o -MF CMakeFiles/promod3_loop.dir/idx_handler.cc.o.d -o CMakeFiles/promod3_loop.dir/idx_handler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/idx_handler.cc [ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o -MF CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o.d -o CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/loop_object_loader.cc [ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o -MF CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o.d -o CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/mm_system_creator.cc [ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o [ 16%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/structure_db.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o -MF CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o.d -o CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/psipred_prediction.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/structure_db.cc.o -MF CMakeFiles/promod3_loop.dir/structure_db.cc.o.d -o CMakeFiles/promod3_loop.dir/structure_db.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc [ 16%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o -MF CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o.d -o CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/torsion_sampler.cc [ 18%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/sidechain_atom_rule_lookup.cc [ 18%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o -MF CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o.d -o CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/sidechain_atom_constructor.cc In file included from /usr/include/c++/14/string:54, from /usr/include/boost/assert/source_location.hpp:15, from /usr/include/boost/exception/exception.hpp:9, from /usr/include/boost/throw_exception.hpp:21, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:31, from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/structure_db.hh:22, from /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:17: In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:904:15, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38, inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:331:25: /usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] 1084 | { return _M_string_length; } | ^~~~~~~~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /usr/include/ost/generic_property.hh:34, from /usr/include/ost/mol/entity_base.hh:25, from /usr/include/ost/mol/entity_view.hh:27, from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/structure_db.hh:29: /usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In file included from /usr/include/c++/14/string:42: In static member function 'static void std::char_traits::assign(char_type&, const char_type&)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:433:23, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:882:18, inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38, inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:331:25: /usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits::char_type*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized] 350 | __c1 = __c2; | ^~~~ /usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38, inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:331:25: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string]' at /usr/include/boost/variant/variant.hpp:597:21, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step, std::__cxx11::basic_string, boost::mpl::l_item, float, boost::mpl::l_item, int, boost::mpl::l_item, bool, boost::mpl::l_item, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from 'static typename Visitor::result_type boost::variant::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48, inlined from 'typename Visitor::result_type boost::variant::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43, inlined from 'void boost::variant::variant_assign(boost::variant&&) [with T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27, inlined from 'void boost::variant::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10, inlined from 'typename boost::enable_if >, boost::detail::variant::is_variant_constructible_from::is_recursive_, boost::mpl::transform::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type, boost::mpl::protect > > >, boost::mpl::identity::is_sequence_based_, typename boost::mpl::eval_if::is_recursive_, T0_, boost::mpl::identity >::type, boost::detail::variant::make_variant_list::is_recursive_, T0_, boost::mpl::identity >::type, TN ...> >::type> >::type, boost::mpl::protect > >::type> >, boost::variant&>::type boost::variant::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15, inlined from 'void ost::GenericPropContainer::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38, inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:331:25: /usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string, std::allocator >*)((char*)&temp + offsetof(boost::variant, std::allocator >, float, int, bool, geom::Vec3>,boost::variant, std::allocator >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string::.std::__cxx11::basic_string::::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized] 905 | _M_capacity(__str._M_allocated_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)': /usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here 2107 | variant temp(rhs); | ^~~~ [ 19%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/core/_core.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_core.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_core.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.13/site-packages/promod3/core/_core.so CMakeFiles/_core.dir/export_geom.cc.o CMakeFiles/_core.dir/export_runtime_profiling.cc.o CMakeFiles/_core.dir/export_graph_minimizer.cc.o CMakeFiles/_core.dir/wrap_core.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 19%] Built target _core [ 19%] Linking CXX shared library ../../stage/lib64/libpromod3_loop.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_loop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_loop.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_loop.so.3.4 -o ../../stage/lib64/libpromod3_loop.so.3.4.2 CMakeFiles/promod3_loop.dir/all_atom_env.cc.o CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o CMakeFiles/promod3_loop.dir/amino_acid_atoms.cc.o CMakeFiles/promod3_loop.dir/backbone.cc.o CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o CMakeFiles/promod3_loop.dir/density_creator.cc.o CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o CMakeFiles/promod3_loop.dir/frag_db.cc.o CMakeFiles/promod3_loop.dir/fragger.cc.o CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o 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make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 19%] Built target promod3_loop make -f loop/pymod/CMakeFiles/_loop.dir/build.make loop/pymod/CMakeFiles/_loop.dir/depend make -f scoring/src/CMakeFiles/promod3_scoring.dir/build.make scoring/src/CMakeFiles/promod3_scoring.dir/depend make -f sidechain/src/CMakeFiles/promod3_sidechain.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod 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-DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_all_atom_env.cc.o -MF CMakeFiles/_loop.dir/export_all_atom_env.cc.o.d -o CMakeFiles/_loop.dir/export_all_atom_env.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_all_atom_env.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/cbeta_env_listener.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_all_atom_positions.cc.o -MF CMakeFiles/_loop.dir/export_all_atom_positions.cc.o.d -o CMakeFiles/_loop.dir/export_all_atom_positions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_all_atom_positions.cc [ 23%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o [ 23%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/frame.cc.o [ 25%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o [ 25%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o -MF CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o.d -o CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_amino_acid_atoms.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o -MF CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o.d -o CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/scoring_object_loader.cc [ 26%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/disulfid.cc.o [ 26%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_backbone.cc.o [ 26%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o -MF CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o.d -o CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/bb_dep_rotamer_lib.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o -MF CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/cb_packing_score.cc [ 26%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_backbone.cc.o -MF CMakeFiles/_loop.dir/export_backbone.cc.o.d -o CMakeFiles/_loop.dir/export_backbone.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_backbone.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/disulfid.cc.o -MF CMakeFiles/promod3_sidechain.dir/disulfid.cc.o.d -o CMakeFiles/promod3_sidechain.dir/disulfid.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/disulfid.cc [ 28%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o -MF CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/cbeta_score.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/frame.cc.o -MF CMakeFiles/promod3_sidechain.dir/frame.cc.o.d -o CMakeFiles/promod3_sidechain.dir/frame.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/frame.cc [ 29%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o -MF CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o.d -o CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_forcefield_lookup.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/reduced_env_listener.cc [ 29%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_frag_db.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/particle_scoring.cc [ 30%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o [ 30%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/scwrl4_particle_scoring.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_frag_db.cc.o -MF CMakeFiles/_loop.dir/export_frag_db.cc.o.d -o CMakeFiles/_loop.dir/export_frag_db.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_frag_db.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/scwrl3_particle_scoring.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/vina_particle_scoring.cc [ 30%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer.cc [ 32%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_cruncher.cc [ 32%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_density.cc [ 32%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_group.cc [ 33%] 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/build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_id.cc [ 33%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_lib.cc [ 35%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/reduced_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/reduced_score.cc.o -MF CMakeFiles/promod3_scoring.dir/reduced_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/reduced_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/reduced_score.cc [ 35%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/clash_env_listener.cc [ 36%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_lib_entry.cc [ 36%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_lib_reader.cc [ 38%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o -MF CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o.d -o CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/sidechain_connector.cc [ 38%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/clash_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/clash_score.cc.o -MF CMakeFiles/promod3_scoring.dir/clash_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/clash_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/clash_score.cc [ 39%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/density_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/density_score.cc.o -MF CMakeFiles/promod3_scoring.dir/density_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/density_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/density_score.cc [ 39%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o -MF CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o.d -o CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/sidechain_object_loader.cc [ 39%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_constructor.cc [ 39%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/hbond_env_listener.cc [ 40%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_lookup.cc [ 42%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/hbond_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/hbond_score.cc.o -MF CMakeFiles/promod3_scoring.dir/hbond_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/hbond_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/hbond_score.cc [ 42%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/scwrl4_rotamer_constructor.cc [ 42%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_fragger.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_fragger.cc.o -MF CMakeFiles/_loop.dir/export_fragger.cc.o.d -o CMakeFiles/_loop.dir/export_fragger.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_fragger.cc [ 43%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/scwrl3_rotamer_constructor.cc [ 43%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/vina_rotamer_constructor.cc [ 43%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o -MF CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/ss_agreement_score.cc [ 45%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_loop_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_loop_object_loader.cc.o -MF CMakeFiles/_loop.dir/export_loop_object_loader.cc.o.d -o CMakeFiles/_loop.dir/export_loop_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_loop_object_loader.cc [ 45%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/ss_agreement_env_listener.cc [ 45%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o -MF CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o.d -o CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/subrotamer_optimizer.cc [ 46%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/torsion_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/torsion_score.cc.o -MF CMakeFiles/promod3_scoring.dir/torsion_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/torsion_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/torsion_score.cc [ 46%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o -MF CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/pairwise_score.cc [ 47%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o -MF CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o.d -o CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/constraint_constructor.cc [ 47%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_mm_system_creator.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_mm_system_creator.cc.o -MF CMakeFiles/_loop.dir/export_mm_system_creator.cc.o.d -o CMakeFiles/_loop.dir/export_mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_mm_system_creator.cc [ 49%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_psipred_prediction.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_psipred_prediction.cc.o -MF CMakeFiles/_loop.dir/export_psipred_prediction.cc.o.d -o CMakeFiles/_loop.dir/export_psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_psipred_prediction.cc [ 49%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_overall_scorer.cc [ 49%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_interaction_env_listener.cc [ 50%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_interaction_score.cc [ 50%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_structure_db.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_structure_db.cc.o -MF CMakeFiles/_loop.dir/export_structure_db.cc.o.d -o CMakeFiles/_loop.dir/export_structure_db.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_structure_db.cc [ 50%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_packing_score.cc [ 52%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_clash_score.cc [ 52%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_torsion_sampler.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_torsion_sampler.cc.o -MF CMakeFiles/_loop.dir/export_torsion_sampler.cc.o.d -o CMakeFiles/_loop.dir/export_torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_torsion_sampler.cc [ 53%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/wrap_loop.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/wrap_loop.cc.o -MF CMakeFiles/_loop.dir/wrap_loop.cc.o.d -o CMakeFiles/_loop.dir/wrap_loop.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/wrap_loop.cc [ 54%] Linking CXX shared library ../../stage/lib64/libpromod3_sidechain.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_sidechain.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_sidechain.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_sidechain.so.3.4 -o ../../stage/lib64/libpromod3_sidechain.so.3.4.2 CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o CMakeFiles/promod3_sidechain.dir/disulfid.cc.o CMakeFiles/promod3_sidechain.dir/frame.cc.o CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/rotamer.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_sidechain.so.3.4 ../../stage/lib64/libpromod3_sidechain.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 54%] Built target promod3_sidechain make -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/_sidechain.dir/DependInfo.cmake "--color=" [ 54%] Linking CXX shared library ../../stage/lib64/libpromod3_scoring.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_scoring.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 54%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_connector.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_connector.cc.o -MF CMakeFiles/_sidechain.dir/export_connector.cc.o.d -o CMakeFiles/_sidechain.dir/export_connector.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_connector.cc [ 56%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_disulfid.cc.o [ 57%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_disulfid.cc.o -MF CMakeFiles/_sidechain.dir/export_disulfid.cc.o.d -o CMakeFiles/_sidechain.dir/export_disulfid.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_disulfid.cc [ 57%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_frame.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_frame.cc.o -MF CMakeFiles/_sidechain.dir/export_frame.cc.o.d -o CMakeFiles/_sidechain.dir/export_frame.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_frame.cc [ 57%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer.cc.o [ 57%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_particle.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o.d -o 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-DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer_ids.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer_lib.cc [ 61%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o CMakeFiles/promod3_scoring.dir/backbone_overall_scorer.cc.o CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o CMakeFiles/promod3_scoring.dir/reduced_score.cc.o CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o CMakeFiles/promod3_scoring.dir/clash_score.cc.o CMakeFiles/promod3_scoring.dir/density_score.cc.o CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o CMakeFiles/promod3_scoring.dir/hbond_score.cc.o CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o CMakeFiles/promod3_scoring.dir/torsion_score.cc.o CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_scoring.so.3.4 ../../stage/lib64/libpromod3_scoring.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 63%] Built target promod3_scoring make -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/_scoring.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 64%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_backbone_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_backbone_score.cc.o -MF CMakeFiles/_scoring.dir/export_backbone_score.cc.o.d -o CMakeFiles/_scoring.dir/export_backbone_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_backbone_score.cc make -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 66%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o -MF CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o.d -o CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/extension_scheme.cc In file included from /usr/include/boost/python/override.hpp:13, from /usr/include/boost/python/wrapper.hpp:8, from /usr/include/boost/python/object/value_holder.hpp:15, from /usr/include/boost/python/object/class_metadata.hpp:14, from /usr/include/boost/python/class.hpp:23, from /usr/include/boost/python.hpp:18, from /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_mm_system_creator.cc:17: In member function 'boost::python::converter::extract_rvalue::result_type boost::python::converter::extract_rvalue::operator()() const [with T = bool]', inlined from 'boost::python::extract::operator result_type() const [with T = bool]' at /usr/include/boost/python/extract.hpp:136:23, inlined from 'void promod3::core::ConvertListToVector(const boost::python::list&, std::vector&) [with T = bool]' at /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh:66:16: /usr/include/boost/python/extract.hpp:185:11: warning: '*(bool*)((char*)& + offsetof(boost::python::extract,boost::python::extract::.boost::python::converter::extract_rvalue::m_data.boost::python::converter::rvalue_from_python_data::.boost::python::converter::rvalue_from_python_storage::storage))' may be used uninitialized [-Wmaybe-uninitialized] 185 | ); | ^ In file included from /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_mm_system_creator.cc:18: /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh: In function 'void promod3::core::ConvertListToVector(const boost::python::list&, std::vector&) [with T = bool]': /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh:66:32: note: '' declared here 66 | v.push_back(boost::python::extract(l[i])); | ^~~~~~~~~~~~~~~~ [ 66%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/gap.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/gap.cc.o -MF CMakeFiles/promod3_modelling.dir/gap.cc.o.d -o CMakeFiles/promod3_modelling.dir/gap.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/gap.cc [ 66%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_all_atom_score.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_all_atom_score.cc.o -MF CMakeFiles/_scoring.dir/export_all_atom_score.cc.o.d -o CMakeFiles/_scoring.dir/export_all_atom_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_all_atom_score.cc [ 67%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/gap_extender.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/gap_extender.cc.o -MF CMakeFiles/promod3_modelling.dir/gap_extender.cc.o.d -o CMakeFiles/promod3_modelling.dir/gap_extender.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/gap_extender.cc [ 67%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/model.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/model.cc.o -MF CMakeFiles/promod3_modelling.dir/model.cc.o.d -o CMakeFiles/promod3_modelling.dir/model.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/model.cc [ 67%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o -MF CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o.d -o CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/all_atom_relaxer.cc [ 67%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_object_loader.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_object_loader.cc.o -MF CMakeFiles/_scoring.dir/export_object_loader.cc.o.d -o CMakeFiles/_scoring.dir/export_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_object_loader.cc [ 69%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o -MF CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o.d -o CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_pairwise_functions.cc [ 70%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o -MF CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o.d -o CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/backbone_relaxer.cc [ 70%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/ccd.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/ccd.cc.o -MF CMakeFiles/promod3_modelling.dir/ccd.cc.o.d -o CMakeFiles/promod3_modelling.dir/ccd.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/ccd.cc [ 71%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/kic.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/kic.cc.o -MF CMakeFiles/promod3_modelling.dir/kic.cc.o.d -o CMakeFiles/promod3_modelling.dir/kic.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/kic.cc [ 71%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o -MF CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o.d -o CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/loop_candidate.cc [ 71%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo.cc [ 71%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o -MF CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o.d -o CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_constraint_constructor.cc [ 73%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo_closer.cc [ 73%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo_cooler.cc [ 74%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo_sampler.cc /build/reproducible-path/promod3-3.4.2+ds/modelling/src/model.cc: In function 'void promod3::modelling::MergeMHandle(const ModellingHandle&, ModellingHandle&, uint, uint, uint, uint, const geom::Mat4&)': /build/reproducible-path/promod3-3.4.2+ds/modelling/src/model.cc:402:17: warning: possibly dangling reference to a temporary [-Wdangling-reference] 402 | const String& seqres = source_mhandle.seqres[source_chain_idx].GetString(); | ^~~~~~ /build/reproducible-path/promod3-3.4.2+ds/modelling/src/model.cc:402:75: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(((int)source_chain_idx)).ost::seq::SequenceHandle::GetString()' 402 | const String& seqres = source_mhandle.seqres[source_chain_idx].GetString(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 74%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/loop/_loop.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_loop.dir/link.txt --verbose=1 [ 74%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o -MF CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o.d -o CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/rigid_blocks.cc [ 74%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo_scorer.cc /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_loop.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.13/site-packages/promod3/loop/_loop.so CMakeFiles/_loop.dir/export_all_atom_env.cc.o CMakeFiles/_loop.dir/export_all_atom_positions.cc.o CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o CMakeFiles/_loop.dir/export_backbone.cc.o CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o CMakeFiles/_loop.dir/export_frag_db.cc.o CMakeFiles/_loop.dir/export_fragger.cc.o CMakeFiles/_loop.dir/export_loop_object_loader.cc.o CMakeFiles/_loop.dir/export_mm_system_creator.cc.o CMakeFiles/_loop.dir/export_psipred_prediction.cc.o CMakeFiles/_loop.dir/export_structure_db.cc.o CMakeFiles/_loop.dir/export_torsion_sampler.cc.o CMakeFiles/_loop.dir/wrap_loop.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_loop.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 74%] Built target _loop [ 76%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o -MF CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o.d -o CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_scwrl3_energy_functions.cc [ 76%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_density_scorer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_density_scorer.cc.o -MF CMakeFiles/_scoring.dir/export_density_scorer.cc.o.d -o CMakeFiles/_scoring.dir/export_density_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_density_scorer.cc [ 77%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/score_container.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/score_container.cc.o -MF CMakeFiles/promod3_modelling.dir/score_container.cc.o.d -o CMakeFiles/promod3_modelling.dir/score_container.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/score_container.cc [ 77%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o -MF CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o.d -o CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/scoring_weights.cc [ 78%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o -MF CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o.d -o CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/sidechain_reconstructor.cc [ 78%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o -MF CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o.d -o CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/sidechain_env_listener.cc [ 80%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/motif_finder.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/motif_finder.cc.o -MF CMakeFiles/promod3_modelling.dir/motif_finder.cc.o.d -o CMakeFiles/promod3_modelling.dir/motif_finder.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/motif_finder.cc [ 80%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/afdb.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/afdb.cc.o -MF CMakeFiles/promod3_modelling.dir/afdb.cc.o.d -o CMakeFiles/promod3_modelling.dir/afdb.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/afdb.cc [ 81%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/wrap_scoring.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/wrap_scoring.cc.o -MF CMakeFiles/_scoring.dir/wrap_scoring.cc.o.d -o CMakeFiles/_scoring.dir/wrap_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/wrap_scoring.cc /build/reproducible-path/promod3-3.4.2+ds/modelling/src/afdb.cc: In function 'void promod3::modelling::CreatePentaMatch(const ost::seq::SequenceList&, const String&, bool)': /build/reproducible-path/promod3-3.4.2+ds/modelling/src/afdb.cc:220:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 220 | const String& sname = seq_list[i].GetName(); | ^~~~~ /build/reproducible-path/promod3-3.4.2+ds/modelling/src/afdb.cc:220:48: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(i).ost::seq::SequenceHandle::GetName()' 220 | const String& sname = seq_list[i].GetName(); | ~~~~~~~~~~~~~~~~~~~^~ [ 81%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/scoring/_scoring.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_scoring.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_scoring.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.13/site-packages/promod3/scoring/_scoring.so CMakeFiles/_scoring.dir/export_backbone_score.cc.o CMakeFiles/_scoring.dir/export_all_atom_score.cc.o CMakeFiles/_scoring.dir/export_object_loader.cc.o CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o CMakeFiles/_scoring.dir/export_density_scorer.cc.o CMakeFiles/_scoring.dir/wrap_scoring.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_scoring.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 81%] Built target _scoring [ 81%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/sidechain/_sidechain.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_sidechain.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_sidechain.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.13/site-packages/promod3/sidechain/_sidechain.so CMakeFiles/_sidechain.dir/export_connector.cc.o CMakeFiles/_sidechain.dir/export_disulfid.cc.o CMakeFiles/_sidechain.dir/export_frame.cc.o CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o CMakeFiles/_sidechain.dir/export_particle.cc.o CMakeFiles/_sidechain.dir/export_rotamer.cc.o CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_sidechain.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 81%] Built target _sidechain In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Dense:1, from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/eigen_types.hh:23, from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/superpose.hh:24, from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/backbone.hh:33, from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/kic.hh:21, from /build/reproducible-path/promod3-3.4.2+ds/modelling/src/kic.cc:17: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]': /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 4 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Linking CXX shared library ../../stage/lib64/libpromod3_modelling.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_modelling.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_modelling.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_modelling.so.3.4 -o ../../stage/lib64/libpromod3_modelling.so.3.4.2 CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o CMakeFiles/promod3_modelling.dir/gap.cc.o CMakeFiles/promod3_modelling.dir/gap_extender.cc.o CMakeFiles/promod3_modelling.dir/model.cc.o CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o CMakeFiles/promod3_modelling.dir/ccd.cc.o CMakeFiles/promod3_modelling.dir/kic.cc.o CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o CMakeFiles/promod3_modelling.dir/score_container.cc.o CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o CMakeFiles/promod3_modelling.dir/motif_finder.cc.o CMakeFiles/promod3_modelling.dir/afdb.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_modelling.so.3.4.2 ../../stage/lib64/libpromod3_modelling.so.3.4 ../../stage/lib64/libpromod3_modelling.so make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 81%] Built target 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CMakeFiles/_modelling.dir/export_motif_finder.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_motif_finder.cc cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_afdb.cc.o -MF CMakeFiles/_modelling.dir/export_afdb.cc.o.d -o CMakeFiles/_modelling.dir/export_afdb.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_afdb.cc [ 90%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/wrap_modelling.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/wrap_modelling.cc.o -MF CMakeFiles/_modelling.dir/wrap_modelling.cc.o.d -o CMakeFiles/_modelling.dir/wrap_modelling.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/wrap_modelling.cc [ 90%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/modelling/_modelling.so cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_modelling.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_modelling.dir/link.d -Wl,-z,relro -shared -o ../../stage/lib64/python3.13/site-packages/promod3/modelling/_modelling.so CMakeFiles/_modelling.dir/export_extension_scheme.cc.o CMakeFiles/_modelling.dir/export_gap.cc.o CMakeFiles/_modelling.dir/export_gap_extender.cc.o CMakeFiles/_modelling.dir/export_loop_candidate.cc.o CMakeFiles/_modelling.dir/export_loop_closure.cc.o CMakeFiles/_modelling.dir/export_model.cc.o CMakeFiles/_modelling.dir/export_monte_carlo.cc.o CMakeFiles/_modelling.dir/export_rigid_blocks.cc.o CMakeFiles/_modelling.dir/export_score_container.cc.o CMakeFiles/_modelling.dir/export_scoring_weights.cc.o CMakeFiles/_modelling.dir/export_sidechain_reconstructor.cc.o CMakeFiles/_modelling.dir/export_motif_finder.cc.o CMakeFiles/_modelling.dir/export_afdb.cc.o CMakeFiles/_modelling.dir/wrap_modelling.cc.o -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_modelling.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 90%] Built target _modelling make -f 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'/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/depend make -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/depend make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/DependInfo.cmake "--color=" [ 91%] Generating ../../stage/share/promod3/loop_data/ff_lookup_charmm.dat [ 91%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_coil.dat make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_torsion_sampler_coil.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_coil.dat'\ TorsionSampler make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_ff_lookup_charmm.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/ff_lookup_charmm.dat'\ ForcefieldLookup make -f loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 91%] Generating ../../stage/share/promod3/loop_data/torsion_sampler.dat make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_torsion_sampler.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler.dat'\ TorsionSampler [ 92%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_extended.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_torsion_sampler_extended.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_extended.dat'\ TorsionSampler make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 92%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_helical.dat make -f scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 92%] Generating ../../stage/share/promod3/loop_data/frag_db.dat make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_frag_db.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/frag_db.dat'\ FragDB cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_torsion_sampler_helical.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_helical.dat'\ TorsionSampler make -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/depend make -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/depend [ 94%] Generating ../../stage/share/promod3/loop_data/structure_db.dat [ 95%] Generating ../../stage/share/promod3/scoring_data/aa_packing_scorer.dat make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_structure_db.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/structure_db.dat'\ StructureDB make -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/depend [ 95%] Generating ../../stage/share/promod3/scoring_data/cb_packing_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/depend cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_aa_packing_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/aa_packing_scorer.dat'\ AllAtomPackingScorer make -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/DependInfo.cmake "--color=" make -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/depend cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_cb_packing_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/cb_packing_scorer.dat'\ CBPackingScorer make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/DependInfo.cmake "--color=" [ 97%] Generating ../../stage/share/promod3/scoring_data/reduced_scorer.dat [ 98%] Generating ../../stage/share/promod3/scoring_data/cbeta_scorer.dat cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_reduced_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/reduced_scorer.dat'\ ReducedScorer cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_cbeta_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/cbeta_scorer.dat'\ CBetaScorer make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. make -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. make -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' Compound library not available. Some functionality may not work as expected. [ 98%] Generating ../../stage/share/promod3/scoring_data/hbond_scorer.dat Compound library not available. Some functionality may not work as expected. make -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_hbond_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/hbond_scorer.dat'\ HBondScorer make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] Generating ../../stage/share/promod3/scoring_data/ss_agreement_scorer.dat cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_ss_agreement_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/ss_agreement_scorer.dat'\ SSAgreementScorer Compound library not available. Some functionality may not work as expected. [ 98%] Generating ../../stage/share/promod3/scoring_data/torsion_scorer.dat [ 98%] Generating ../../stage/share/promod3/scoring_data/aa_scorer.dat cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_torsion_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/torsion_scorer.dat'\ TorsionScorer cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_aa_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/aa_scorer.dat'\ AllAtomInteractionScorer Compound library not available. Some functionality may not work as expected. [100%] Generating ../../stage/share/promod3/sidechain_data/bb_dep_lib.dat cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/sidechain/data/convert_lib.py'\ '/build/reproducible-path/promod3-3.4.2+ds/sidechain/data/portable_bb_dep_lib.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data/bb_dep_lib.dat'\ BBDepRotamerLib [100%] Generating ../../stage/share/promod3/sidechain_data/lib.dat cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/sidechain/data/convert_lib.py'\ '/build/reproducible-path/promod3-3.4.2+ds/sidechain/data/portable_lib.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data/lib.dat'\ RotamerLib Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. Compound library not available. Some functionality may not work as expected. /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.' pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_scoring_data_cbeta_scorer.dat [100%] Built target generate_scoring_data_aa_packing_scorer.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_sidechain_data_lib.dat [100%] Built target generate_scoring_data_cb_packing_scorer.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_scoring_data_ss_agreement_scorer.dat [100%] Built target generate_scoring_data_aa_scorer.dat [100%] Built target generate_scoring_data_torsion_scorer.dat [100%] Built target generate_loop_data_ff_lookup_charmm.dat [100%] Built target generate_scoring_data_hbond_scorer.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_torsion_sampler_extended.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_torsion_sampler_coil.dat [100%] Built target generate_loop_data_torsion_sampler.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_scoring_data_reduced_scorer.dat make -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'scoring/data/CMakeFiles/scoring_data.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_torsion_sampler_helical.dat [100%] Built target scoring_data make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_sidechain_data_bb_dep_lib.dat make -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'sidechain/data/CMakeFiles/sidechain_data.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target sidechain_data make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_frag_db.dat make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target generate_loop_data_structure_db.dat make -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/depend make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/build make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'loop/data/CMakeFiles/loop_data.dir/build'. make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target loop_data make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds' dh_auto_test --no-parallel cd obj-x86_64-linux-gnu && make -j1 check ARGS\+=--verbose ARGS\+=-j1 make[2]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/promod3-3.4.2+ds -B/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/promod3-3.4.2+ds -B/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles 94 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[4]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-model /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-model cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-rawmodel /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-rawmodel cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-help /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-help cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-sidechains /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-sidechains make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 0%] Built target actions make -f actions/tests/CMakeFiles/test_data_actions.dir/build.make actions/tests/CMakeFiles/test_data_actions.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_data_actions.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_data_actions.dir/build.make actions/tests/CMakeFiles/test_data_actions.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/tests/data/gly.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data/gly.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/tests/data/seq.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data/seq.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/tests/data/seq_ins.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data/seq_ins.fasta make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 0%] Built target test_data_actions make -f actions/tests/CMakeFiles/test_actions.py_run.dir/build.make actions/tests/CMakeFiles/test_actions.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_actions.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_actions.py_run.dir/build.make actions/tests/CMakeFiles/test_actions.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] running checks test_actions.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/actions/tests/test_actions.py" Compound library not available. Some functionality may not work as expected. . ---------------------------------------------------------------------- Ran 1 test in 0.001s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target test_actions.py_run make -f core/tests/CMakeFiles/test_data_core.dir/build.make core/tests/CMakeFiles/test_data_core.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_data_core.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_data_core.dir/build.make core/tests/CMakeFiles/test_data_core.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests//test_helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core//test_helper.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/broken_on_purpose.chemlib /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/broken_on_purpose.chemlib cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/1crn.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/1crn_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn_cut.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2aoh-1_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2aoh-1_cut_A.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut_A.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2aoh-1_cut_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut_B.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2jlp-1.aln /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.aln cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2jlp-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2jlp-1.json /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.json cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2jlp-1.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5d52-1_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5d52-1_cut_A.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut_A.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5d52-1_cut_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut_B.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/1crn.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn.hhm cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/1crn_corrupted.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn_corrupted.hhm cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5ua4_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5ua4_B.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5ua4_B.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5ua4_B.hhm cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/alignment.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/alignment.fas cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake.fas cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_1.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_1.fas cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_2trg.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_2trg.fas cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_3.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_3.fas cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake.fas.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake.fas.gz cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_nel.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_nel.fas cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_sw.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_sw.fas make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target test_data_core make -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3 cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target create_stage make -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./check_io.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./check_io.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./cluster.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./cluster.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./dynamic_spatial_organizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./dynamic_spatial_organizer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./export_helper.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./export_helper.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./geom_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_base.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./geom_stems.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_stems.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./message.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./message.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_data_sink.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_sink.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_data_source.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_source.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_serializer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_serializer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./runtime_profiling.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./runtime_profiling.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./superpose.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./superpose.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./enumerator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./enumerator.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./graph.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./tree.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tree.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./tetrahedral_polytope.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tetrahedral_polytope.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./graph_minimizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph_minimizer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./eigen_types.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./eigen_types.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target promod3_core_headers make -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/config/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src/CMakeFiles/config_header.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src/config.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/config.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 1%] Built target config_header make -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src 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/build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_suite_core.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_suite_core.dir/build.make core/tests/CMakeFiles/test_suite_core.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 4%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_check_io.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_check_io.cc.o -MF CMakeFiles/test_suite_core.dir/test_check_io.cc.o.d -o CMakeFiles/test_suite_core.dir/test_check_io.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_check_io.cc [ 5%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o -MF CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o.d -o CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_portable_binary.cc [ 5%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o -MF CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o.d -o CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_graph_minimizer.cc [ 6%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/tests.cc.o -MF CMakeFiles/test_suite_core.dir/tests.cc.o.d -o CMakeFiles/test_suite_core.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/tests/tests.cc [ 6%] Linking CXX executable ../../tests/core/test_suite_core cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_core.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_core.dir/link.d CMakeFiles/test_suite_core.dir/test_check_io.cc.o CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o CMakeFiles/test_suite_core.dir/tests.cc.o -o ../../tests/core/test_suite_core -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 6%] Built target test_suite_core make -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/core_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/__init__.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/helper.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/pm3argparse.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/pm3argparse.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 6%] Built target core_pymod make -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/_core.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'core/pymod/CMakeFiles/_core.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 8%] Built target _core make -f core/tests/CMakeFiles/test_suite_core_run.dir/build.make core/tests/CMakeFiles/test_suite_core_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_suite_core_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_suite_core_run.dir/build.make core/tests/CMakeFiles/test_suite_core_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 9%] running checks for module core cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/test_suite_core Running 4 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 9%] Built target test_suite_core_run make -f core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build.make core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build.make core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 10%] running checks test_setcompoundschemlib.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_setcompoundschemlib.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 0.728s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 10%] Built target test_setcompoundschemlib.py_run make -f core/tests/CMakeFiles/test_helper.py_run.dir/build.make core/tests/CMakeFiles/test_helper.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_helper.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_helper.py_run.dir/build.make core/tests/CMakeFiles/test_helper.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 11%] running checks test_helper.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_helper.py" Compound library not available. Some functionality may not work as expected. ............ ---------------------------------------------------------------------- Ran 12 tests in 0.012s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 11%] Built target test_helper.py_run make -f core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build.make core/tests/CMakeFiles/test_pm3argparse.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_pm3argparse.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build.make core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 11%] running checks test_pm3argparse.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_pm3argparse.py" Compound library not available. Some functionality may not work as expected. .................................................................. ---------------------------------------------------------------------- Ran 66 tests in 10.214s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 11%] Built target test_pm3argparse.py_run make -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data_dir.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 11%] Built target loop_data_dir make -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/modelling_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/__init__.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_closegaps.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_closegaps.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_molprobity.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_molprobity.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_pipeline.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_pipeline.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_ring_punches.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_ring_punches.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_denovo.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_denovo.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_fragger_handle.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_fragger_handle.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_reconstruct_sidechains.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_reconstruct_sidechains.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_monte_carlo.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_monte_carlo.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_mhandle_helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_mhandle_helper.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_alignment_fiddling.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_alignment_fiddling.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_raw_model.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_raw_model.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_planar_rings.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_planar_rings.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_afdb_modelling.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_afdb_modelling.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 11%] Built target modelling_pymod make -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./all_atom_env.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_env.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./all_atom_positions.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_positions.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./amino_acid_atoms.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./amino_acid_atoms.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./backbone.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./backbone.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./bb_trace_param.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./bb_trace_param.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./data_bag.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./data_bag.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_hash_table.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_hash_table.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./density_creator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./density_creator.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./forcefield_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./forcefield_lookup.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./frag_db.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./frag_db.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./fragger.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./fragger.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./hydrogen_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./hydrogen_rule_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_rule_lookup.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./idx_handler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./idx_handler.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./loop_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./loop_object_loader.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./mm_system_creator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./mm_system_creator.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./psipred_prediction.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./psipred_prediction.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./stem_geom.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./stem_geom.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./structure_db.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./torsion_sampler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./torsion_sampler.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./ushort_vec.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./ushort_vec.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./sidechain_atom_rule_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_rule_lookup.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./sidechain_atom_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./structure_db_custom_types.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db_custom_types.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 11%] Built target promod3_loop_headers make -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/src/CMakeFiles/promod3_loop.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 20%] Built target promod3_loop make -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/loop_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/loop/__init__.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 20%] Built target loop_pymod make -f loop/pymod/CMakeFiles/_loop.dir/build.make loop/pymod/CMakeFiles/_loop.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/_loop.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/pymod/CMakeFiles/_loop.dir/build.make loop/pymod/CMakeFiles/_loop.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/pymod/CMakeFiles/_loop.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 25%] Built target _loop make -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./backbone_score_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_score_base.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./backbone_overall_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_overall_scorer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./scoring_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scoring_object_loader.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cbeta_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cb_packing_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cb_packing_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cbeta_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./reduced_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./reduced_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./clash_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./clash_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./density_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./density_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./hbond_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./hbond_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./ss_agreement_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./ss_agreement_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./torsion_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./torsion_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./pairwise_scoring_function.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_scoring_function.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./pairwise_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./constraint_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./constraint_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_score_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_score_base.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_overall_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_overall_scorer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_interaction_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_interaction_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_packing_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_packing_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_clash_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_clash_score.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./scwrl3_energy_functions.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scwrl3_energy_functions.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 25%] Built target promod3_scoring_headers make -f scoring/src/CMakeFiles/promod3_scoring.dir/build.make scoring/src/CMakeFiles/promod3_scoring.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/src/CMakeFiles/promod3_scoring.dir/build.make scoring/src/CMakeFiles/promod3_scoring.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/src/CMakeFiles/promod3_scoring.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 36%] Built target promod3_scoring make -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/scoring_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/scoring/__init__.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 36%] Built target scoring_pymod make -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/_scoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/pymod/CMakeFiles/_scoring.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 40%] Built target _scoring make -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./bb_dep_rotamer_lib.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./bb_dep_rotamer_lib.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./disulfid.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./disulfid.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./frame.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./frame.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_graph.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_graph.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle_scoring_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring_base.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl4_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl3_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./vina_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_particle_scoring.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_cruncher.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_cruncher.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_density.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_density.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_group.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_group.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_id.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_id.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib_entry.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_entry.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib_reader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_reader.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./sidechain_connector.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_connector.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./sidechain_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_object_loader.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lookup.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl4_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl3_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./vina_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_rotamer_constructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./subrotamer_optimizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./subrotamer_optimizer.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 40%] Built target promod3_sidechain_headers make -f sidechain/src/CMakeFiles/promod3_sidechain.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/src/CMakeFiles/promod3_sidechain.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/src/CMakeFiles/promod3_sidechain.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 51%] Built target promod3_sidechain make -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/sidechain_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/sidechain/__init__.py make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 51%] Built target sidechain_pymod make -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/_sidechain.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/pymod/CMakeFiles/_sidechain.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 57%] Built target _sidechain make -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling_headers.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./extension_scheme.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./extension_scheme.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./gap.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./gap_extender.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap_extender.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./model.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./model.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./all_atom_relaxer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./all_atom_relaxer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./backbone_relaxer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./backbone_relaxer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./ccd.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./ccd.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./kic.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./kic.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./loop_candidate.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./loop_candidate.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_closer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_closer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_cooler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_cooler.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_sampler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_sampler.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_scorer.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./rigid_blocks.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./rigid_blocks.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./score_container.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./score_container.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./scoring_weights.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./scoring_weights.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./sidechain_reconstructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_reconstructor.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./sidechain_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_env_listener.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./motif_finder.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./motif_finder.hh cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./robin_hood.h /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./robin_hood.h cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./afdb.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./afdb.hh make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 57%] Built target promod3_modelling_headers make -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'modelling/src/CMakeFiles/promod3_modelling.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 67%] Built target promod3_modelling make -f modelling/pymod/CMakeFiles/_modelling.dir/build.make modelling/pymod/CMakeFiles/_modelling.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/_modelling.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/pymod/CMakeFiles/_modelling.dir/build.make modelling/pymod/CMakeFiles/_modelling.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'modelling/pymod/CMakeFiles/_modelling.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 73%] Built target _modelling make -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init___init__.py_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'core/init/CMakeFiles/init___init__.py_pymod.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 74%] Built target init___init__.py_pymod make -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init_pymod.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'core/init/CMakeFiles/init_pymod.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 74%] Built target init_pymod make -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/_init.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'core/init/CMakeFiles/_init.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 74%] Built target _init make -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 75%] Built target generate_loop_data_ff_lookup_charmm.dat make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 75%] Built target generate_loop_data_torsion_sampler.dat make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 75%] Built target generate_loop_data_torsion_sampler_coil.dat make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 76%] Built target generate_loop_data_torsion_sampler_extended.dat make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 76%] Built target generate_loop_data_torsion_sampler_helical.dat make -f loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 76%] Built target generate_loop_data_frag_db.dat make -f loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 77%] Built target generate_loop_data_structure_db.dat make -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'loop/data/CMakeFiles/loop_data.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 77%] Built target loop_data make -f loop/tests/CMakeFiles/test_data_loop.dir/build.make loop/tests/CMakeFiles/test_data_loop.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_data_loop.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/tests/CMakeFiles/test_data_loop.dir/build.make loop/tests/CMakeFiles/test_data_loop.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/1A88A.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A.hhm cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/1A88A.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/1A88A_with_gap.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A_with_gap.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory 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/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa_prot_polar_hisd.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hisd.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa_prot_polar_hise.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hise.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa_prot_polar_hish.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hish.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa_prot_ref.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_ref.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/CHARMM27.dat /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/CHARMM27.dat make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 77%] Built target test_data_loop make -f loop/tests/CMakeFiles/test_suite_loop.dir/build.make loop/tests/CMakeFiles/test_suite_loop.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_suite_loop.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/tests/CMakeFiles/test_suite_loop.dir/build.make loop/tests/CMakeFiles/test_suite_loop.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 77%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o -MF CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o -c 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_backbone.cc.o -MF CMakeFiles/test_suite_loop.dir/test_backbone.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_backbone.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_backbone.cc [ 79%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o -MF CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_forcefield.cc [ 79%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o -MF CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_hydrogens.cc [ 80%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o -MF CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_mm_system_creator.cc [ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o -MF CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_psipred_prediction.cc [ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o -MF CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_sidechain_construction.cc [ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o -MF CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_torsion_sampler.cc [ 82%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o -MF CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_structuredb.cc [ 82%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/tests.cc.o -MF CMakeFiles/test_suite_loop.dir/tests.cc.o.d -o CMakeFiles/test_suite_loop.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/tests.cc [ 84%] Linking CXX executable ../../tests/loop/test_suite_loop cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_loop.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_loop.dir/link.d CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o CMakeFiles/test_suite_loop.dir/test_all_atom_positions.cc.o CMakeFiles/test_suite_loop.dir/test_amino_acid_atoms.cc.o CMakeFiles/test_suite_loop.dir/test_backbone.cc.o CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o CMakeFiles/test_suite_loop.dir/tests.cc.o -o ../../tests/loop/test_suite_loop -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 84%] Built target test_suite_loop make -f loop/tests/CMakeFiles/test_suite_loop_run.dir/build.make loop/tests/CMakeFiles/test_suite_loop_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_suite_loop_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f loop/tests/CMakeFiles/test_suite_loop_run.dir/build.make loop/tests/CMakeFiles/test_suite_loop_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 84%] running checks for module loop cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/test_suite_loop Running 68 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 84%] Built target test_suite_loop_run make -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data_dir.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 84%] Built target scoring_data_dir make -f scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_aa_packing_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 85%] Built target generate_scoring_data_aa_packing_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_cb_packing_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 85%] Built target generate_scoring_data_cb_packing_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_cbeta_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 86%] Built target generate_scoring_data_cbeta_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_reduced_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_hbond_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_ss_agreement_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_torsion_scorer.dat make -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 87%] Built target generate_scoring_data_aa_scorer.dat make -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'scoring/data/CMakeFiles/scoring_data.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 87%] Built target scoring_data make -f scoring/tests/CMakeFiles/test_data_scoring.dir/build.make scoring/tests/CMakeFiles/test_data_scoring.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_data_scoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/tests/CMakeFiles/test_data_scoring.dir/build.make scoring/tests/CMakeFiles/test_data_scoring.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/data/1CRNA.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data/1CRNA.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/data/3DEFA.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data/3DEFA.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/data/clash_test.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data/clash_test.pdb make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 87%] Built target test_data_scoring make -f scoring/tests/CMakeFiles/test_suite_scoring.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_suite_scoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/tests/CMakeFiles/test_suite_scoring.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/test_backbone_score_base.cc [ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/test_backbone_scorer.cc [ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/test_all_atom_scorer.cc /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/test_all_atom_scorer.cc:73:33: warning: 'promod3::loop::AllAtomPositions scoring::{anonymous}::GenerateTestPos(const String&, uint, uint)' defined but not used [-Wunused-function] 73 | promod3::loop::AllAtomPositions GenerateTestPos( | ^~~~~~~~~~~~~~~ [ 89%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/tests.cc.o -MF CMakeFiles/test_suite_scoring.dir/tests.cc.o.d -o CMakeFiles/test_suite_scoring.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/tests.cc [ 89%] Linking CXX executable ../../tests/scoring/test_suite_scoring cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_scoring.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_scoring.dir/link.d CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o CMakeFiles/test_suite_scoring.dir/tests.cc.o -o ../../tests/scoring/test_suite_scoring -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 89%] Built target test_suite_scoring make -f scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_suite_scoring_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 90%] running checks for module scoring cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/test_suite_scoring Running 20 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 90%] Built target test_suite_scoring_run make -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data_dir.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 90%] Built target sidechain_data_dir make -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 91%] Built target generate_sidechain_data_bb_dep_lib.dat make -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 91%] Built target generate_sidechain_data_lib.dat make -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/sidechain_data.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 91%] Built target sidechain_data make -f sidechain/tests/CMakeFiles/test_data_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_data_sidechain.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_data_sidechain.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/tests/CMakeFiles/test_data_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_data_sidechain.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests/data/all_sc.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain/data/all_sc.pdb make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 91%] Built target test_data_sidechain make -f sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_suite_sidechain.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 91%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o -MF CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests/test_frame_construction.cc [ 92%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o -MF CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests/test_rotamers.cc [ 92%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/tests.cc.o -MF CMakeFiles/test_suite_sidechain.dir/tests.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests/tests.cc [ 93%] Linking CXX executable ../../tests/sidechain/test_suite_sidechain cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_sidechain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_sidechain.dir/link.d CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o CMakeFiles/test_suite_sidechain.dir/tests.cc.o -o ../../tests/sidechain/test_suite_sidechain -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 93%] Built target test_suite_sidechain make -f sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 93%] running checks for module sidechain cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain/test_suite_sidechain Running 4 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 93%] Built target test_suite_sidechain_run make -f modelling/tests/CMakeFiles/test_data_modelling.dir/build.make modelling/tests/CMakeFiles/test_data_modelling.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_data_modelling.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_data_modelling.dir/build.make modelling/tests/CMakeFiles/test_data_modelling.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1cjx-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1cjx-1.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1cjx-1.pdb.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1cjx-1.pdb.gz cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1CRN.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1CRN.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_build.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_build.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_cut.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_final.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_final.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_rec.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_rec.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_sc.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_sc.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_sc_test.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_sc_test.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1CRNA.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1CRNA.hhm cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1eye.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1eye_rec.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye_rec.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1eye_sc_test.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye_sc_test.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1ITX-A-11_sidechain.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1ITX-A-11_sidechain.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1K5C-A-16_clash.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1K5C-A-16_clash.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1mcg.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1mcg.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2aoh-1_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2aoh-1_cut_A.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut_A.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2aoh-1_cut_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut_B.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2dbs.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2dbs.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2jlp-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2jlp-1.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2jlp-1.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2jlp-1.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2xim-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2xim-1.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2xim-1.pdb.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2xim-1.pdb.gz cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/3b08-3.pdb.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/3b08-3.pdb.gz cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/3b08-3.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/3b08-3.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/4nyk.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/4nyk.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/4R6K-A-13_sidechain.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/4R6K-A-13_sidechain.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/4ksl-1.pdb.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/4ksl-1.pdb.gz cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/4ksl-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/4ksl-1.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/5d52-1.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/5d52-1_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/5d52-1_cut_A.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut_A.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/5d52-1_cut_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut_B.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/CA-3cm91E.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/CA-3cm91E.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/CA-3cm91E.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/CA-3cm91E.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/cbeta.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/cbeta.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/cbeta.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/cbeta.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/del.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/del.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/ff_NAD.dat /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/ff_NAD.dat cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/gly.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/gly_on_top.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_on_top.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/gly_almost_on_top.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_almost_on_top.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/gly_shifted_nter.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_shifted_nter.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/hetero-punched.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/hetero-punched.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/ins.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/ins.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/modelCApartial-5tgl1A.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/modelCApartial-5tgl1A.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E 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/usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/port_str_db.dat /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/port_str_db.dat cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/sep.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/sep.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/sep.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/sep.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/seq.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/seq.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/smtl2bl4.1.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/smtl2bl4.1.pdb cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/ter.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/ter.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/terminal_deletion_aln.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/terminal_deletion_aln.fasta cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/double_gap_aln.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/double_gap_aln.fasta make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 93%] Built target test_data_modelling make -f modelling/tests/CMakeFiles/test_suite_modelling.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_suite_modelling.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_suite_modelling.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 94%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_loop_candidates.cc [ 94%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_loop_closing.cc [ 95%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_sidechain_reconstructor.cc [ 95%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/tests.cc.o cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/tests.cc.o -MF CMakeFiles/test_suite_modelling.dir/tests.cc.o.d -o CMakeFiles/test_suite_modelling.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/tests.cc [ 95%] Linking CXX executable ../../tests/modelling/test_suite_modelling cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_modelling.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_modelling.dir/link.d CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o CMakeFiles/test_suite_modelling.dir/tests.cc.o -o ../../tests/modelling/test_suite_modelling -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_modelling.so.3.4.2 ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 95%] Built target test_suite_modelling make -f modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_suite_modelling_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 96%] running checks for module modelling cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/test_suite_modelling Running 7 test cases... *** No errors detected make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 96%] Built target test_suite_modelling_run make -f modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build.make modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build.make modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 96%] running checks test_close_gaps.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_close_gaps.py" Compound library not available. Some functionality may not work as expected. ................................. ---------------------------------------------------------------------- Ran 33 tests in 67.356s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 96%] Built target test_close_gaps.py_run make -f modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build.make modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build.make modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 96%] running checks test_gap_extension.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_gap_extension.py" Compound library not available. Some functionality may not work as expected. ...... ---------------------------------------------------------------------- Ran 6 tests in 0.125s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 96%] Built target test_gap_extension.py_run make -f modelling/tests/CMakeFiles/test_modelling.py_run.dir/build.make modelling/tests/CMakeFiles/test_modelling.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_modelling.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_modelling.py_run.dir/build.make modelling/tests/CMakeFiles/test_modelling.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 97%] running checks test_modelling.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_modelling.py" Compound library not available. Some functionality may not work as expected. ..............Alignment-structure mismatch at pos 0 in chain A, alignment is 'X' structure residue is 'S'. Ok for modified residue SEP. ...residue A.GLY8 has conflicting atom CA - skipping atom. residue A.GLY8 is missing atoms CA ........ ---------------------------------------------------------------------- Ran 25 tests in 0.374s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 97%] Built target test_modelling.py_run make -f modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build.make modelling/tests/CMakeFiles/test_pipeline.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_pipeline.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build.make modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 97%] running checks test_pipeline.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_pipeline.py" Compound library not available. Some functionality may not work as expected. Switched to slower reference platform of OpenMM! ............... ---------------------------------------------------------------------- Ran 15 tests in 124.554s OK OpenMM CPU platform not available. Skipping almost_on_top check. phenix.molprobity is missing. Please install it and make it available in your PATH to execute test testMolProbity. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 97%] Built target test_pipeline.py_run make -f modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build.make modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build.make modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 97%] running checks test_ring_punches.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_ring_punches.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 0.373s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 97%] Built target test_ring_punches.py_run make -f modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build.make modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build.make modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] running checks test_sidechain_reconstruction.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_sidechain_reconstruction.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 6.322s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] Built target test_sidechain_reconstruction.py_run make -f modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build.make modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build.make modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] running checks test_alignment_fiddling.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_alignment_fiddling.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 0.033s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] Built target test_alignment_fiddling.py_run make -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_pm.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/scripts/pm.in -DOUT_FILE=pm -DOST_ROOT="/usr" -DLIBDIR=lib64 -DLIBEXECPATH=libexec/promod3 -DPYTHON_MODULE_PATH=python3.13/site-packages/ -DOST_PYMOD_PATH=/usr/lib/python3/dist-packages -DPython_EXECUTABLE=/usr/bin/python3 -P /build/reproducible-path/promod3-3.4.2+ds/cmake_support/substitute.cmake make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] Built target subst_pm make -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/promod3_scripts.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different pm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin/pm cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/pm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin/pm make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] Built target promod3_scripts make -f actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-model.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_build-model.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] running checks test_action_build-model.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/actions/tests/test_action_build-model.py" Compound library not available. Some functionality may not work as expected. ... ---------------------------------------------------------------------- Ran 3 tests in 12.136s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] Built target test_action_build-model.py_run make -f actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] running checks test_action_build-rawmodel.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/actions/tests/test_action_build-rawmodel.py" Compound library not available. Some functionality may not work as expected. ... ---------------------------------------------------------------------- Ran 3 tests in 4.251s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [ 98%] Built target test_action_build-rawmodel.py_run make -f actions/tests/CMakeFiles/test_action_help.py_run.dir/build.make actions/tests/CMakeFiles/test_action_help.py_run.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_help.py_run.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f actions/tests/CMakeFiles/test_action_help.py_run.dir/build.make actions/tests/CMakeFiles/test_action_help.py_run.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] running checks test_action_help.py cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/ /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/actions/tests/test_action_help.py" Compound library not available. Some functionality may not work as expected. .. ---------------------------------------------------------------------- Ran 2 tests in 0.089s OK make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target test_action_help.py_run make -f CMakeFiles/codetest.dir/build.make CMakeFiles/codetest.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles/codetest.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/codetest.dir/build.make CMakeFiles/codetest.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/codetest.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target codetest make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' [100%] Built target check make[4]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/promod3-3.4.2\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/promod3-3.4.2+ds -B/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/config.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4.2 -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4.2" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_core.so -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./check_io.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./cluster.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./dynamic_spatial_organizer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./export_helper.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./geom_base.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./geom_stems.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./message.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./portable_binary_data_sink.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./portable_binary_data_source.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./portable_binary_serializer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./runtime_profiling.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./superpose.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./enumerator.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./graph.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./tree.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./tetrahedral_polytope.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./graph_minimizer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./eigen_types.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/_core.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/_core.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/helper.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/pm3argparse.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4.2 -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4.2" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_loop.so -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./all_atom_env.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./all_atom_positions.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./amino_acid_atoms.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./backbone.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./bb_trace_param.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./data_bag.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./dense_hash_table.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./dense_map.hh -- Up-to-date: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./dense_map.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./density_creator.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./forcefield_lookup.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./frag_db.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./fragger.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./hydrogen_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./hydrogen_rule_lookup.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./idx_handler.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./loop_object_loader.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./mm_system_creator.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./psipred_prediction.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./stem_geom.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./structure_db.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./torsion_sampler.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./ushort_vec.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./sidechain_atom_rule_lookup.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./sidechain_atom_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./structure_db_custom_types.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/loop/_loop.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/loop/_loop.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/loop/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_coil.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_extended.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_helical.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/frag_db.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/structure_db.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/ff_lookup_charmm.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4.2 -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4.2" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_scoring.so -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./backbone_score_base.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./backbone_overall_scorer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./scoring_object_loader.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./cbeta_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./cb_packing_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./cbeta_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./reduced_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./reduced_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./clash_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./clash_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./density_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./hbond_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./hbond_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./ss_agreement_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./ss_agreement_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./torsion_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./pairwise_scoring_function.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./pairwise_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./constraint_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_score_base.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_overall_scorer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_interaction_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_interaction_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_packing_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_clash_score.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./scwrl3_energy_functions.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/scoring/_scoring.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/scoring/_scoring.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/scoring/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/cb_packing_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/cbeta_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/reduced_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/hbond_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/ss_agreement_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/torsion_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/aa_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/aa_packing_scorer.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4.2 -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4.2" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./bb_dep_rotamer_lib.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./disulfid.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./frame.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_graph.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./particle.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./particle_scoring_base.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./particle_scoring.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl4_particle_scoring.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl3_particle_scoring.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./vina_particle_scoring.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_cruncher.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_density.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_group.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_id.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib_entry.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib_reader.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./sidechain_connector.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./sidechain_object_loader.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lookup.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./vina_rotamer_constructor.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./subrotamer_optimizer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/sidechain/_sidechain.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/sidechain/_sidechain.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/sidechain/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/sidechain_data/lib.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/sidechain_data/bb_dep_lib.dat -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4.2 -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4.2" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_modelling.so -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./extension_scheme.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./gap.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./gap_extender.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./model.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./all_atom_relaxer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./backbone_relaxer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./ccd.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./kic.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./loop_candidate.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_closer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_cooler.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_sampler.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_scorer.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./rigid_blocks.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./score_container.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./scoring_weights.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./sidechain_reconstructor.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./sidechain_env_listener.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./motif_finder.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./robin_hood.h -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./afdb.hh -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_modelling.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_modelling.so" to "" -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/__init__.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_closegaps.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_molprobity.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_pipeline.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_ring_punches.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_denovo.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_fragger_handle.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_reconstruct_sidechains.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_monte_carlo.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_mhandle_helper.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_alignment_fiddling.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_raw_model.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_planar_rings.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/bin/pm -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/libexec/promod3/pm-build-model -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/libexec/promod3/pm-build-rawmodel -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/libexec/promod3/pm-help -- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/libexec/promod3/pm-build-sidechains make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds' mv debian/tmp/usr/bin/pm debian/tmp/usr/bin/promod # See debian/README.Debian make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds' dh_install for PKG in core loop modelling scoring sidechain; do \ dh_install -p libpromod3-${PKG}-dev usr/include/promod3/${PKG}; \ dh_install -p libpromod3-${PKG}-dev usr/lib64/libpromod3_${PKG}.so usr/lib/x86_64-linux-gnu; \ dh_install -p libpromod3-${PKG}3.4 usr/lib64/libpromod3_${PKG}.so.* usr/lib/x86_64-linux-gnu; \ done make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds' dh_install rm -rf debian/tmp/usr/include/promod3 debian/tmp/usr/lib64 make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds' dh_installdocs dh_installchangelogs dh_python3 I: dh_python3 fs:421: renaming _core.so to _core.cpython-313-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _loop.so to _loop.cpython-313-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _scoring.so to _scoring.cpython-313-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _modelling.so to _modelling.cpython-313-x86_64-linux-gnu.so I: dh_python3 fs:421: renaming _sidechain.so to _sidechain.cpython-313-x86_64-linux-gnu.so dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package promod3: substitution variable ${python3:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libpromod3-loop3.4-dbgsym' in '../libpromod3-loop3.4-dbgsym_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-loop-dev' in '../libpromod3-loop-dev_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-core-dev' in '../libpromod3-core-dev_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-core3.4-dbgsym' in '../libpromod3-core3.4-dbgsym_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-scoring3.4' in '../libpromod3-scoring3.4_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-sidechain-dev' in '../libpromod3-sidechain-dev_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-modelling3.4-dbgsym' in '../libpromod3-modelling3.4-dbgsym_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-core3.4' in '../libpromod3-core3.4_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'promod3-data' in '../promod3-data_3.4.2+ds-1_all.deb'. dpkg-deb: building package 'libpromod3-modelling3.4' in '../libpromod3-modelling3.4_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-loop3.4' in '../libpromod3-loop3.4_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-sidechain3.4' in '../libpromod3-sidechain3.4_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'python3-promod3-dbgsym' in '../python3-promod3-dbgsym_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'python3-promod3' in '../python3-promod3_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-modelling-dev' in '../libpromod3-modelling-dev_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'promod3' in '../promod3_3.4.2+ds-1_all.deb'. dpkg-deb: building package 'libpromod3-sidechain3.4-dbgsym' in '../libpromod3-sidechain3.4-dbgsym_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-scoring-dev' in '../libpromod3-scoring-dev_3.4.2+ds-1_amd64.deb'. dpkg-deb: building package 'libpromod3-scoring3.4-dbgsym' in '../libpromod3-scoring3.4-dbgsym_3.4.2+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../promod3_3.4.2+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../promod3_3.4.2+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/899332 and its subdirectories I: Current time: Tue Apr 1 14:50:42 -12 2025 I: pbuilder-time-stamp: 1743562242 Wed Apr 2 02:50:54 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Apr 2 02:50:54 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed Apr 2 03:04:52 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed Apr 2 03:04:53 UTC 2025 I: promod3_3.4.2+ds-1_amd64.changes: Format: 1.8 Date: Tue, 01 Apr 2025 05:15:30 -0400 Source: promod3 Binary: libpromod3-core-dev libpromod3-core3.4 libpromod3-core3.4-dbgsym libpromod3-loop-dev libpromod3-loop3.4 libpromod3-loop3.4-dbgsym libpromod3-modelling-dev libpromod3-modelling3.4 libpromod3-modelling3.4-dbgsym libpromod3-scoring-dev libpromod3-scoring3.4 libpromod3-scoring3.4-dbgsym libpromod3-sidechain-dev libpromod3-sidechain3.4 libpromod3-sidechain3.4-dbgsym promod3 promod3-data python3-promod3 python3-promod3-dbgsym Architecture: amd64 all Version: 3.4.2+ds-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: libpromod3-core-dev - protein homology modelling engine libpromod3-core3.4 - protein homology modelling engine libpromod3-loop-dev - protein homology modelling engine libpromod3-loop3.4 - protein homology modelling engine libpromod3-modelling-dev - protein homology modelling engine libpromod3-modelling3.4 - protein homology modelling engine libpromod3-scoring-dev - protein homology modelling engine libpromod3-scoring3.4 - protein homology modelling engine libpromod3-sidechain-dev - protein homology modelling engine libpromod3-sidechain3.4 - protein homology modelling engine promod3 - protein homology modelling engine promod3-data - protein homology modelling engine - data files python3-promod3 - protein homology modelling engine - Python 3 package Changes: promod3 (3.4.2+ds-1) unstable; urgency=medium . * New upstream release 3.4.2+ds. Checksums-Sha1: 9d9469162228f6efd3ec8e6114611ce0a06906d6 24480 libpromod3-core-dev_3.4.2+ds-1_amd64.deb d5453a8483a30524a2130703832d137017e26446 2714064 libpromod3-core3.4-dbgsym_3.4.2+ds-1_amd64.deb 0b525a0085acf18365bc3a1f35b33aa773f822ac 97492 libpromod3-core3.4_3.4.2+ds-1_amd64.deb 79026b7f60e7218c8926f7a16703f441b4e48c5a 35500 libpromod3-loop-dev_3.4.2+ds-1_amd64.deb e176f8db09b40c813984f3d8e556418f48269877 5426544 libpromod3-loop3.4-dbgsym_3.4.2+ds-1_amd64.deb be2bbb4bbd95d46f0e0359458e95b96a80e8bb9d 289612 libpromod3-loop3.4_3.4.2+ds-1_amd64.deb 71c375ac07c4ec94f8ae5b8325c67272c0dc88d5 37152 libpromod3-modelling-dev_3.4.2+ds-1_amd64.deb 662975b9de6f94f0667b5674afe8809e0f71597d 12185404 libpromod3-modelling3.4-dbgsym_3.4.2+ds-1_amd64.deb d3bf60a6e928b0344937b95e7365abf0d8f5606b 307968 libpromod3-modelling3.4_3.4.2+ds-1_amd64.deb e3ba19644efd3e66cad97bee0c00b81397497e24 18072 libpromod3-scoring-dev_3.4.2+ds-1_amd64.deb b06fa7d6fcbcae6fa412ec8a694cf1c2b54edf15 4630432 libpromod3-scoring3.4-dbgsym_3.4.2+ds-1_amd64.deb e7ff32f36bee5f02a23c030da23ab329b901d930 181640 libpromod3-scoring3.4_3.4.2+ds-1_amd64.deb 287004a3d4b6ca68f4f1814800ed0021bc2239eb 19428 libpromod3-sidechain-dev_3.4.2+ds-1_amd64.deb 280c44e72100035aec1508c4ffbf82564c3e9b0b 4524784 libpromod3-sidechain3.4-dbgsym_3.4.2+ds-1_amd64.deb 85fcc1955b57b4330bd63197b13fb704557a359c 238084 libpromod3-sidechain3.4_3.4.2+ds-1_amd64.deb 1e11468ad525f2eacffe1a9d2ce31fb40c12f2fe 371418628 promod3-data_3.4.2+ds-1_all.deb f67ee4a18ec473bbaa5d8460c38fee94bbdb974b 11036 promod3_3.4.2+ds-1_all.deb 51d5c426284d5d3e408d1feb1e880ff4f68f35b0 18865 promod3_3.4.2+ds-1_amd64.buildinfo 9783b5a2170384227fd178f1072c9f4a72858dce 19436780 python3-promod3-dbgsym_3.4.2+ds-1_amd64.deb 7860802ce343c92900323983c39c24d0a963b8a5 1053228 python3-promod3_3.4.2+ds-1_amd64.deb Checksums-Sha256: 8724f179f94a17213a16613921ac4e6c938e4f95ec3ec8285e996806760c063c 24480 libpromod3-core-dev_3.4.2+ds-1_amd64.deb 7d190957932ec289b6671acde80b43b26ce88da9359d6cb825ef7bf56554fa1d 2714064 libpromod3-core3.4-dbgsym_3.4.2+ds-1_amd64.deb a0d72866a378d4af3b3a01e643931701ac0ee0631a97f024f757cdccc58bcef3 97492 libpromod3-core3.4_3.4.2+ds-1_amd64.deb 2d719f1333aaa9b28e8bea500621321e5247dc1a681d211a80e9c4e1d7e7c241 35500 libpromod3-loop-dev_3.4.2+ds-1_amd64.deb c7dad4419841bb5a05ab9a430867caec35f5a76b7af6f3cad5734d50f14f9ca1 5426544 libpromod3-loop3.4-dbgsym_3.4.2+ds-1_amd64.deb 3072cf2cdd76d98a8ab7b87fde070d20d2e0d1a05661ae725a103f4d31a34aa5 289612 libpromod3-loop3.4_3.4.2+ds-1_amd64.deb d7ceaa7ea563a7ceccc5454fa4f19c7af244bf1f72c7e76744446c2417255731 37152 libpromod3-modelling-dev_3.4.2+ds-1_amd64.deb d6563a809eec3942495338a136777809e2dab88556705c276f198bf320158c5b 12185404 libpromod3-modelling3.4-dbgsym_3.4.2+ds-1_amd64.deb a0032b25e8645592c6b64eb70acbe031cebaaed21688e4a554ea8931e2cf5a96 307968 libpromod3-modelling3.4_3.4.2+ds-1_amd64.deb dcfeb2b8e05a5271afa5a482401ef81cd794355186214ccf9c9d222479bc9154 18072 libpromod3-scoring-dev_3.4.2+ds-1_amd64.deb 8a255308cf773f201fe426543c27dc5ce44708ea2227292cbb6e1edd72829b38 4630432 libpromod3-scoring3.4-dbgsym_3.4.2+ds-1_amd64.deb 7ae2a650d4c49a4c3c2921d5289c87dcdf542f07c07668141df6b0127c26011e 181640 libpromod3-scoring3.4_3.4.2+ds-1_amd64.deb 307d3c329829efae338de18f114526fd02daca604ac1646ef2750c49023b5eb8 19428 libpromod3-sidechain-dev_3.4.2+ds-1_amd64.deb f18e4c8f00bb24ff8884a1e40c8c54b7cd98f499e931d87ec56aa91478228697 4524784 libpromod3-sidechain3.4-dbgsym_3.4.2+ds-1_amd64.deb 1aec32c98c757a77607acc4e289d401f33d81a445bf716fe7d402858f664b4ab 238084 libpromod3-sidechain3.4_3.4.2+ds-1_amd64.deb 1ac7c965c975bc4a6e39925f1ac2eea4b4b1195ec0f34948aabb5d91b356c08d 371418628 promod3-data_3.4.2+ds-1_all.deb 00e5160c165895f14f18933bbc3decbd80775be680587cede53ba489a8dc2a13 11036 promod3_3.4.2+ds-1_all.deb 0b6d728deab1daff4dae823ee4297f80014bc236a06d7740101e656017015814 18865 promod3_3.4.2+ds-1_amd64.buildinfo 8058b3071ffae3c967906cd3c41315ab55e756347fb14dc5a95469ff644ff077 19436780 python3-promod3-dbgsym_3.4.2+ds-1_amd64.deb 503b5773020c2c31c033294e3126dbad3bb69eafe34b0060a48ada35473e2714 1053228 python3-promod3_3.4.2+ds-1_amd64.deb Files: db42f2ce60de8b7fef829db4511b59d2 24480 libdevel optional libpromod3-core-dev_3.4.2+ds-1_amd64.deb 6e2fcb52e39d076d925dda3e2c5c4ad4 2714064 debug optional libpromod3-core3.4-dbgsym_3.4.2+ds-1_amd64.deb 0c8589c7c681e138ace20faa0db95aef 97492 libs optional libpromod3-core3.4_3.4.2+ds-1_amd64.deb b87453f3ed58cb2e2dbe1edeccb47043 35500 libdevel optional libpromod3-loop-dev_3.4.2+ds-1_amd64.deb 430e119c0236839a62efcded6a5f9231 5426544 debug optional libpromod3-loop3.4-dbgsym_3.4.2+ds-1_amd64.deb 09aeaa3599c07cd2bfc221d38740bad3 289612 libs optional libpromod3-loop3.4_3.4.2+ds-1_amd64.deb 1c4e395b8d0314de5a6fccc1931760bf 37152 libdevel optional libpromod3-modelling-dev_3.4.2+ds-1_amd64.deb caa15b20638667fb00d90acb5c6d1a38 12185404 debug optional libpromod3-modelling3.4-dbgsym_3.4.2+ds-1_amd64.deb 97f3d5eb79c6eed2ffd328b2c05524f5 307968 libs optional libpromod3-modelling3.4_3.4.2+ds-1_amd64.deb ae1fb51a5a3eea43ff300e6a98d6a424 18072 libdevel optional libpromod3-scoring-dev_3.4.2+ds-1_amd64.deb 9f36d5ccfa9cf18e6ed806106a4c5c6e 4630432 debug optional libpromod3-scoring3.4-dbgsym_3.4.2+ds-1_amd64.deb 7e4fc7bdfaffa83604fac6ae9f8e96d1 181640 libs optional libpromod3-scoring3.4_3.4.2+ds-1_amd64.deb ab6aadec13d09ebe4818d5da7d04e3d2 19428 libdevel optional libpromod3-sidechain-dev_3.4.2+ds-1_amd64.deb 9fb268f935c9ecc3b7ad3fb35d94bb0a 4524784 debug optional libpromod3-sidechain3.4-dbgsym_3.4.2+ds-1_amd64.deb ee88ee7c2277cbf17315d561eed0755e 238084 libs optional libpromod3-sidechain3.4_3.4.2+ds-1_amd64.deb f3ce7d831adf53849c6c14f891105250 371418628 science optional promod3-data_3.4.2+ds-1_all.deb 321d090a29825b8ff41cad4f7713cf1e 11036 science optional promod3_3.4.2+ds-1_all.deb 36f2c3b2b22b2edb6314593ab1067fd3 18865 science optional promod3_3.4.2+ds-1_amd64.buildinfo 22bcf87297f40617bea690065f787323 19436780 debug optional python3-promod3-dbgsym_3.4.2+ds-1_amd64.deb 5b212b0dc84ff4d0c14fd8cf3dfa2383 1053228 python optional python3-promod3_3.4.2+ds-1_amd64.deb Wed Apr 2 03:04:54 UTC 2025 I: diffoscope 293 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_15-51570.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.pBMlAM1B/promod3_3.4.2+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.pBMlAM1B/promod3_3.4.2+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.pBMlAM1B/promod3_3.4.2+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.pBMlAM1B/b1/promod3_3.4.2+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.pBMlAM1B/b2/promod3_3.4.2+ds-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 218ms CPU time consumed: 219ms Wed Apr 2 03:04:58 UTC 2025 I: diffoscope 293 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 2 03:04:58 UTC 2025 I: promod3 from unstable built successfully and reproducibly on amd64. Wed Apr 2 03:04:59 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Apr 2 03:04:59 UTC 2025 I: Submitting 20K b1/promod3_3.4.2+ds-1_amd64.buildinfo.asc Wed Apr 2 03:05:08 UTC 2025 I: Submitting 20K b2/promod3_3.4.2+ds-1_amd64.buildinfo.asc Wed Apr 2 03:05:08 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 2 03:05:08 UTC 2025 I: Done submitting .buildinfo files. Wed Apr 2 03:05:08 UTC 2025 I: Removing signed promod3_3.4.2+ds-1_amd64.buildinfo.asc files: removed './b1/promod3_3.4.2+ds-1_amd64.buildinfo.asc' removed './b2/promod3_3.4.2+ds-1_amd64.buildinfo.asc'