Fri Jul 25 16:28:00 UTC 2025 I: starting to build voronota/unstable/amd64 on jenkins on '2025-07-25 16:27' Fri Jul 25 16:28:00 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_18/47240/console.log Fri Jul 25 16:28:00 UTC 2025 I: Downloading source for unstable/voronota=1.29.4307+ds-2 --2025-07-25 16:28:00-- http://deb.debian.org/debian/pool/main/v/voronota/voronota_1.29.4307%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2080 (2.0K) [text/prs.lines.tag] Saving to: ‘voronota_1.29.4307+ds-2.dsc’ 0K .. 100% 248M=0s 2025-07-25 16:28:00 (248 MB/s) - ‘voronota_1.29.4307+ds-2.dsc’ saved [2080/2080] Fri Jul 25 16:28:00 UTC 2025 I: voronota_1.29.4307+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: voronota Binary: voronota Architecture: any Version: 1.29.4307+ds-2 Maintainer: Debian Science Maintainers Uploaders: Andrius Merkys , Homepage: https://bitbucket.org/kliment/voronota Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/science-team/voronota Vcs-Git: https://salsa.debian.org/science-team/voronota.git Testsuite: autopkgtest Testsuite-Triggers: perl Build-Depends: cmake, debhelper-compat (= 13), help2man Package-List: voronota deb science optional arch=any Checksums-Sha1: 77c6dff727eb8256900bd88691c26bbb894c1d3e 26217108 voronota_1.29.4307+ds.orig.tar.xz 29f2ef36714d6d72c7e8f6983a5acd7040718867 5780 voronota_1.29.4307+ds-2.debian.tar.xz Checksums-Sha256: 0fe3bda294ac5309441236b2a67fedb5859a6bb338759c0b50b8af449b5d430c 26217108 voronota_1.29.4307+ds.orig.tar.xz 482267ffe24983d7a22b46e6900575f8942164815e67b88e197e2597e476fdde 5780 voronota_1.29.4307+ds-2.debian.tar.xz Files: 1aa6fe8bcffd35ccf914793741d8d306 26217108 voronota_1.29.4307+ds.orig.tar.xz 0670162129403ed3ad85511e1a41fe88 5780 voronota_1.29.4307+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmgbRiISHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHJ1wQAJ4F3k5zDmeNu05XbEaIqK0BXtpEzfGH tiu99WUqqtgu57TDOJ/XWdquivvO4JsJCEkAMK3cF77TE/10s9aMGJ9kAQF18x7N FiJkEApiGoU6PWHQkfIvgbxcEOr7kYKR07Jfj6y9DywBCp5nYM3hmOeXbSvmArUs fju3xTNGBLxvBGGlSkZ+YAuxoPF2h9a41ueDiwtvQ1EykDWR5TmpOWIeh4F9d5Oo tdJk90zH7aulPSCUzMsRMTXv3tOpbYTr5KW++B7tr7g8Mq/b+uuq8i25lZtTKTD1 pV2wcQYbhz9mzCjdzOuJp5R/uzKtCxAzBJz5f2+3TwNOf4Kx8UT5OPurqWPtrUwH NlPXNK5gzJNm+SQ9EKzLfJMNT23xYM82UXk7uNXpZhk2DgFNgU+DUueEoxIA1/hd S2NzoHPsM7MrC8+KWy06eXWxo43Bvx352ze3wtEbpKovPmG2byelx561GJF90Vd6 agC5hwOz2HWhZiCw1Kn4IsK7q6PMDRcCxel5/uXx+99O8uXTVDQdmAAhoU8S+lH+ 0vIlDl71GD5mp9VfXOc3qrjvxf2s1i8uROQ9+P1yqXkdI9mYeXrqyu/wemeecgNa wuRIh7uF9KcsE4OJTHkXhyXz/ykLBGOgQmD+Xj5Yh0TahTqtVboiP5efxH2U4OaB zRPYeNw5x4Nx =Yv2O -----END PGP SIGNATURE----- Fri Jul 25 16:28:00 UTC 2025 I: Checking whether the package is not for us Fri Jul 25 16:28:00 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Fri Jul 25 16:28:00 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Fri Jul 25 16:32:16 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 27 10:51:00 -12 2026 I: pbuilder-time-stamp: 1787871060 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [voronota_1.29.4307+ds-2.dsc] I: copying [./voronota_1.29.4307+ds.orig.tar.xz] I: copying [./voronota_1.29.4307+ds-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./voronota_1.29.4307+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting voronota in voronota-1.29.4307+ds dpkg-source: info: unpacking voronota_1.29.4307+ds.orig.tar.xz dpkg-source: info: unpacking voronota_1.29.4307+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-packages.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/453534/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d6414000de4540e18e4dd094b2bc9d72' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='453534' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CfsKGNBu/pbuilderrc_9OzF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CfsKGNBu/b1 --logfile b1/build.log voronota_1.29.4307+ds-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/453534/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 31.6 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2 [698 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-3 [349 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b1 [25.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 28 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Fetched 31.6 MB in 0s (73.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../01-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../02-libproc2-0_2%3a4.0.4-8_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../03-procps_2%3a4.0.4-8_amd64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../04-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../06-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../09-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../11-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../12-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../13-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.19-8_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/voronota-1.29.4307+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../voronota_1.29.4307+ds-2_source.changes dpkg-buildpackage: info: source package voronota dpkg-buildpackage: info: source version 1.29.4307+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds' dh_auto_configure -- -DEXPANSION_LT=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXPANSION_LT=ON .. 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CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o.d -o CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/expansion_lt/src/voronota_lt.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_contacts.cpp [ 31%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs 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/build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_energy_stats.cpp [ 75%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o [ 77%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o [ 79%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_global_energy_by_cuts.cpp [ 81%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_potentials_stats.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 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/build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_contacts_quality.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_score_scores.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_simulate_potential_for_membrane_proteins.cpp [ 83%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_split_atoms_file.cpp [ 85%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o [ 87%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contacts.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_contact_environments.cpp [ 89%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_vectorize_points.cpp [ 91%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_balls_to_atoms_file.cpp [ 93%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_write_qa_scores_in_casp_format.cpp [ 95%] Building CXX object CMakeFiles/voronota.dir/src/voronota.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/voronota.cpp.o -MF CMakeFiles/voronota.dir/src/voronota.cpp.o.d -o CMakeFiles/voronota.dir/src/voronota.cpp.o -c /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:59:22: warning: 'template class std::pointer_to_unary_function' is deprecated [-Wdeprecated-declarations] 59 | typedef std::pointer_to_unary_function FunctionPtr; | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/voronota.cpp:1: /usr/include/c++/14/bits/stl_function.h:1102:11: note: declared here 1102 | class pointer_to_unary_function : public unary_function<_Arg, _Result> | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:63, from /usr/include/c++/14/set:62, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/search_for_spherical_collisions.h:4, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_query_balls_clashes.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/bits/stl_tree.h:64: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices_in_parallel.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_vertices.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/bits/stl_tree.h:63, from /usr/include/c++/14/set:62, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/search_for_spherical_collisions.h:4, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_draw_balls.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/bits/stl_tree.h:64: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_mock_solvent.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/vector:62, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/spheres_boundary_construction.h:4, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_demo_ses.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/vector:63: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_calculate_contacts.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 97%] Linking CXX executable voronota-lt cd /build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu/expansion_lt && /usr/bin/cmake -E cmake_link_script CMakeFiles/voronota-lt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -rdynamic -Wl,--dependency-file=CMakeFiles/voronota-lt.dir/link.d "CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o" -o voronota-lt -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu' [ 97%] Built target voronota-lt In file included from /usr/include/c++/14/string:51, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../auxiliaries/program_options_handler.h:4, from /build/reproducible-path/voronota-1.29.4307+ds/src/modes/mode_run_script.cpp:1: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::BoundingSpheresHierarchy::Cluster]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = long unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:651:7, inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:147:27, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' writing between 9 and 9223372036854775807 bytes into a region of size 8 overflows the destination [-Wstringop-overflow=] 452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long unsigned int]', inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long unsigned int]' at /usr/include/c++/14/bits/alloc_traits.h:515:28, inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:380:33, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:398:44, inlined from 'std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:334:26, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:603:61, inlined from 'static std::vector voronota::apollota::SplittingOfSpheres::order_for_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:69:11, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::split_by_median(const std::vector&, const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:61:42, inlined from 'static std::vector > voronota::apollota::SplittingOfSpheres::binary_split(const std::vector&, unsigned int) [with PointType = voronota::apollota::SimpleSphere]' at /build/reproducible-path/voronota-1.29.4307+ds/src/modes/../scripting/operators/../../common/../apollota/splitting_of_spheres.h:43:51: /usr/include/c++/14/bits/new_allocator.h:151:55: note: destination object of size 8 allocated by 'operator new' 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [100%] Linking CXX executable voronota /usr/bin/cmake -E cmake_link_script CMakeFiles/voronota.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4307+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -rdynamic -Wl,--dependency-file=CMakeFiles/voronota.dir/link.d CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o CMakeFiles/voronota.dir/src/modes/mode_plot_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_balls.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_balls_clashes.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_balls_distances.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_balls_sequences_pairings_stats.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_depth_values.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o CMakeFiles/voronota.dir/src/modes/mode_write_qa_scores_in_casp_format.cpp.o CMakeFiles/voronota.dir/src/voronota.cpp.o -o voronota make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu' [100%] Built target voronota make[2]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/voronota/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/voronota-1.29.4307\+ds/debian/voronota AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/voronota-1.29.4307+ds -B/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-cadscore -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-contacts -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-resources -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-voromqa -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-volumes -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-pocket -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-membrane -- Installing: /build/reproducible-path/voronota-1.29.4307+ds/debian/voronota/usr/bin/voronota-lt make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs debian/rules execute_before_dh_installman make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4307+ds' for BIN in ./voronota-*; \ do \ grep -qle --help ${BIN} && help2man ${BIN} --version-string 1.29.4307+ds --no-discard-stderr --no-info > ${BIN}.1; \ done make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4307+ds' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'voronota' in '../voronota_1.29.4307+ds-2_amd64.deb'. dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.29.4307+ds-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../voronota_1.29.4307+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../voronota_1.29.4307+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/453534 and its subdirectories I: Current time: Thu Aug 27 10:55:14 -12 2026 I: pbuilder-time-stamp: 1787871314 Fri Jul 25 16:32:17 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Jul 25 16:32:17 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Jul 25 16:48:44 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Jul 25 16:48:44 UTC 2025 I: voronota_1.29.4307+ds-2_amd64.changes: Format: 1.8 Date: Wed, 07 May 2025 03:13:29 -0400 Source: voronota Binary: voronota voronota-dbgsym Architecture: amd64 Version: 1.29.4307+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: voronota - Voronoi diagram-based tool to find atom contacts Changes: voronota (1.29.4307+ds-2) unstable; urgency=medium . * Build Voronota-LT, install its header-only libraries. Checksums-Sha1: 52248e92db9a4a0ef5fb8735f35d530ebbe92c27 36765444 voronota-dbgsym_1.29.4307+ds-2_amd64.deb a7d3dcf74b9af4a70284023afcf01a98e9f8d083 5999 voronota_1.29.4307+ds-2_amd64.buildinfo 67108fa333d1ffd723412fde1d652fd6f942cf41 2779836 voronota_1.29.4307+ds-2_amd64.deb Checksums-Sha256: afd988a80729e7f5e731ebfb37ab9c2eb7f57f8837c0f4cb75127b91c31364f8 36765444 voronota-dbgsym_1.29.4307+ds-2_amd64.deb 37ffc61a8da4d9fe18db3d1fe7942b7c15380b8e809977c89c82373986945b33 5999 voronota_1.29.4307+ds-2_amd64.buildinfo f4efa25afeea5b8157c6e27b2f06f723db6ec2fe563146643ac144267dde5b9a 2779836 voronota_1.29.4307+ds-2_amd64.deb Files: d25c4f39d10a4982c2c12ea096277378 36765444 debug optional voronota-dbgsym_1.29.4307+ds-2_amd64.deb bf990c13538cb6ecd696c9704eb71968 5999 science optional voronota_1.29.4307+ds-2_amd64.buildinfo 8d1f70095c9ca4d5aa7acbcf2f11284e 2779836 science optional voronota_1.29.4307+ds-2_amd64.deb Fri Jul 25 16:48:45 UTC 2025 I: diffoscope 301 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_18-47240.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CfsKGNBu/voronota_1.29.4307+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CfsKGNBu/voronota_1.29.4307+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CfsKGNBu/voronota_1.29.4307+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CfsKGNBu/b1/voronota_1.29.4307+ds-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.CfsKGNBu/b2/voronota_1.29.4307+ds-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 158ms CPU time consumed: 160ms Fri Jul 25 16:48:45 UTC 2025 I: diffoscope 301 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 25 16:48:45 UTC 2025 I: voronota from unstable built successfully and reproducibly on amd64. Fri Jul 25 16:48:46 UTC 2025 I: Removing signed voronota_1.29.4307+ds-2_amd64.buildinfo.asc files: removed './b1/voronota_1.29.4307+ds-2_amd64.buildinfo.asc' removed './b2/voronota_1.29.4307+ds-2_amd64.buildinfo.asc'