Wed Mar 19 06:22:59 UTC 2025 I: starting to build c2x/unstable/arm64 on jenkins on '2025-03-19 06:22'
Wed Mar 19 06:22:59 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/87041/console.log
Wed Mar 19 06:22:59 UTC 2025 I: Downloading source for unstable/c2x=2.42+ds-1
--2025-03-19 06:23:00-- http://deb.debian.org/debian/pool/main/c/c2x/c2x_2.42%2bds-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1950 (1.9K) [text/prs.lines.tag]
Saving to: ‘c2x_2.42+ds-1.dsc’
0K . 100% 306M=0s
2025-03-19 06:23:00 (306 MB/s) - ‘c2x_2.42+ds-1.dsc’ saved [1950/1950]
Wed Mar 19 06:23:00 UTC 2025 I: c2x_2.42+ds-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: c2x
Binary: c2x
Architecture: any
Version: 2.42+ds-1
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders: Andrius Merkys <merkys@debian.org>,
Homepage: https://www.c2x.org.uk
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/debichem-team/c2x
Vcs-Git: https://salsa.debian.org/debichem-team/c2x.git
Testsuite: autopkgtest
Testsuite-Triggers: pdb2pqr-doc
Build-Depends: debhelper-compat (= 13), libsymspg-dev
Package-List:
c2x deb science optional arch=any
Checksums-Sha1:
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7a2d04edbcadfa9a985a88b4505e3ad6210771ed 2448 c2x_2.42+ds-1.debian.tar.xz
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Files:
8380d8c248a84d6e54692966787742e9 215472 c2x_2.42+ds.orig.tar.xz
bbf6d268c2702291b3cbcb0fa7e6cb80 2448 c2x_2.42+ds-1.debian.tar.xz
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Wed Mar 19 06:23:00 UTC 2025 I: Checking whether the package is not for us
Wed Mar 19 06:23:00 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net.
Wed Mar 19 06:23:00 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Wed Mar 19 06:23:28 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Mar 18 18:23:02 -12 2025
I: pbuilder-time-stamp: 1742365382
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [c2x_2.42+ds-1.dsc]
I: copying [./c2x_2.42+ds.orig.tar.xz]
I: copying [./c2x_2.42+ds-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./c2x_2.42+ds-1.dsc: unsupported subcommand
dpkg-source: info: extracting c2x in c2x-2.42+ds
dpkg-source: info: unpacking c2x_2.42+ds.orig.tar.xz
dpkg-source: info: unpacking c2x_2.42+ds-1.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3828468/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='b2471d86f740492fa4ead457939e6e8e'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3828468'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8tjvd5Vd/pbuilderrc_RsCS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8tjvd5Vd/b1 --logfile b1/build.log c2x_2.42+ds-1.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3828468/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libsymspg-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19898 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libsymspg-dev; however:
Package libsymspg-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu76{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsymspg-dev{a} libsymspg2{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.6 MB of archives. After unpacking 85.1 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-2 [337 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-2 [103 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-2 [43.6 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-7 [285 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-3 [9526 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.3+b1 [630 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 libsymspg2 arm64 2.6.0-1 [190 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 libsymspg-dev arm64 2.6.0-1 [37.4 kB]
Fetched 20.6 MB in 0s (122 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19898 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.46-2_arm64.deb ...
Unpacking libmagic-mgc (1:5.46-2) ...
Selecting previously unselected package libmagic1t64:arm64.
Preparing to unpack .../02-libmagic1t64_1%3a5.46-2_arm64.deb ...
Unpacking libmagic1t64:arm64 (1:5.46-2) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.46-2_arm64.deb ...
Unpacking file (1:5.46-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.4-5_arm64.deb ...
Unpacking bsdextrautils (2.40.4-5) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-7_arm64.deb ...
Unpacking m4 (1.4.19-7) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.5.4-4_all.deb ...
Unpacking libtool (2.5.4-4) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:arm64.
Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ...
Unpacking libelf1t64:arm64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:arm64.
Preparing to unpack .../23-libunistring5_1.3-1_arm64.deb ...
Unpacking libunistring5:arm64 (1.3-1) ...
Selecting previously unselected package libicu76:arm64.
Preparing to unpack .../24-libicu76_76.1-3_arm64.deb ...
Unpacking libicu76:arm64 (76.1-3) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.3+b1_arm64.deb ...
Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.3+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.23.1-1_arm64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package libsymspg2:arm64.
Preparing to unpack .../30-libsymspg2_2.6.0-1_arm64.deb ...
Unpacking libsymspg2:arm64 (2.6.0-1) ...
Selecting previously unselected package libsymspg-dev:arm64.
Preparing to unpack .../31-libsymspg-dev_2.6.0-1_arm64.deb ...
Unpacking libsymspg-dev:arm64 (2.6.0-1) ...
Setting up libpipeline1:arm64 (1.5.8-1) ...
Setting up bsdextrautils (2.40.4-5) ...
Setting up libmagic-mgc (1:5.46-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libmagic1t64:arm64 (1:5.46-2) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-7) ...
Setting up file (1:5.46-2) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up libsymspg2:arm64 (2.6.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up libicu76:arm64 (76.1-3) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.3+b1) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libsymspg-dev:arm64 (2.6.0-1) ...
Setting up libtool (2.5.4-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.41-6) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.37.1-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/reproducible-path/c2x-2.42+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../c2x_2.42+ds-1_source.changes
dpkg-buildpackage: info: source package c2x
dpkg-buildpackage: info: source version 2.42+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_auto_clean
make -j12 clean
make[1]: Entering directory '/build/reproducible-path/c2x-2.42+ds'
rm -f c2x check2xsf.o check_read.o xsf_write.o molecule_fix.o cube_write.o cell_read.o periodic_table.o basis.o super.o xplor_write.o pdb_write.o cell_write.o dx_write.o vasp_write.o pdb_read.o xyz_write.o cml_write.o fdf_write.o gpfa.o rotate.o chdiff_read.o esp_read.o interpolate.o line_write.o shelx_read.o shelx_write.o fbin_write.o ident_sym.o primitive.o ksym.o f15.o cif_write.o cube_read.o cif_read.o c2x2spg.o sort_atoms.o py_write.o xsf_read.o vasp_read.o denfmt_write.o denfmt_read.o parse.o dipole.o fort34_read.o crystal_read.o abinit_read.o abinit_write.o abinit_in_read.o fdf_read.o qe_write.o qe_read.o parity.o potential.o qe_rho_read.o qe_xml_read.o dict.o charge.o qe_psi_read.o print_cell.o bands_write.o geom_write.o xv_read.o rho_read.o tube.o ccp4_write.o xc.o band_process.o gcoeff_write.o wavecar_write.o bxsf_write.o bands_read.o xyz_read.o gcoeff_read.o elk_write.o elk_read.o geom_read.o npy_read.o npy_write.o file_read.o data_combine.o dx_read.o mol_read.o mol_write.o zones.o grad.o band_plot.o dos.o bravais_sc.o phonon_read.o
make[1]: Leaving directory '/build/reproducible-path/c2x-2.42+ds'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j12 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/c2x-2.42+ds'
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o check2xsf.o check2xsf.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o check_read.o check_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xsf_write.o xsf_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o molecule_fix.o molecule_fix.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cube_write.o cube_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cell_read.o cell_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o periodic_table.o periodic_table.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o basis.o basis.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o super.o super.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xplor_write.o xplor_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o pdb_write.o pdb_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cell_write.o cell_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dx_write.o dx_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o vasp_write.o vasp_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o pdb_read.o pdb_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xyz_write.o xyz_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cml_write.o cml_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o fdf_write.o fdf_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o gpfa.o gpfa.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o rotate.o rotate.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o chdiff_read.o chdiff_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o esp_read.o esp_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o interpolate.o interpolate.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o line_write.o line_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o shelx_read.o shelx_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o shelx_write.o shelx_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o fbin_write.o fbin_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o ident_sym.o ident_sym.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o primitive.o primitive.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o ksym.o ksym.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o f15.o f15.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cif_write.o cif_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cube_read.o cube_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cif_read.o cif_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o c2x2spg.o c2x2spg.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o sort_atoms.o sort_atoms.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o py_write.o py_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xsf_read.o xsf_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o vasp_read.o vasp_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o denfmt_write.o denfmt_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o denfmt_read.o denfmt_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o parse.o parse.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dipole.o dipole.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o fort34_read.o fort34_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o crystal_read.o crystal_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o abinit_read.o abinit_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o abinit_write.o abinit_write.c
vasp_read.c: In function 'vasp_read':
vasp_read.c:206:13: warning: '*<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
206 | if(!nionsp[nspec-1])
| ~~~~~~^~~~~~~~~
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o abinit_in_read.o abinit_in_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o fdf_read.o fdf_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_write.o qe_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_read.o qe_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o parity.o parity.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o potential.o potential.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_rho_read.o qe_rho_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_xml_read.o qe_xml_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dict.o dict.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o charge.o charge.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_psi_read.o qe_psi_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o print_cell.o print_cell.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o bands_write.o bands_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o geom_write.o geom_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xv_read.o xv_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o rho_read.o rho_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o tube.o tube.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o ccp4_write.o ccp4_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xc.o xc.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o band_process.o band_process.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o gcoeff_write.o gcoeff_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o wavecar_write.o wavecar_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o bxsf_write.o bxsf_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o bands_read.o bands_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xyz_read.o xyz_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o gcoeff_read.o gcoeff_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o elk_write.o elk_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o elk_read.o elk_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o geom_read.o geom_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o npy_read.o npy_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o npy_write.o npy_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o file_read.o file_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o data_combine.o data_combine.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dx_read.o dx_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o mol_read.o mol_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o mol_write.o mol_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o zones.o zones.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o grad.o grad.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o band_plot.o band_plot.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dos.o dos.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o bravais_sc.o bravais_sc.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o phonon_read.o phonon_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -L. -o c2x check2xsf.o check_read.o xsf_write.o molecule_fix.o cube_write.o cell_read.o periodic_table.o basis.o super.o xplor_write.o pdb_write.o cell_write.o dx_write.o vasp_write.o pdb_read.o xyz_write.o cml_write.o fdf_write.o gpfa.o rotate.o chdiff_read.o esp_read.o interpolate.o line_write.o shelx_read.o shelx_write.o fbin_write.o ident_sym.o primitive.o ksym.o f15.o cif_write.o cube_read.o cif_read.o c2x2spg.o sort_atoms.o py_write.o xsf_read.o vasp_read.o denfmt_write.o denfmt_read.o parse.o dipole.o fort34_read.o crystal_read.o abinit_read.o abinit_write.o abinit_in_read.o fdf_read.o qe_write.o qe_read.o parity.o potential.o qe_rho_read.o qe_xml_read.o dict.o charge.o qe_psi_read.o print_cell.o bands_write.o geom_write.o xv_read.o rho_read.o tube.o ccp4_write.o xc.o band_process.o gcoeff_write.o wavecar_write.o bxsf_write.o bands_read.o xyz_read.o gcoeff_read.o elk_write.o elk_read.o geom_read.o npy_read.o npy_write.o file_read.o data_combine.o dx_read.o mol_read.o mol_write.o zones.o grad.o band_plot.o dos.o bravais_sc.o phonon_read.o -lm -lsymspg
make[1]: Leaving directory '/build/reproducible-path/c2x-2.42+ds'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/c2x/
dh_install
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'c2x' in '../c2x_2.42+ds-1_arm64.deb'.
dpkg-deb: building package 'c2x-dbgsym' in '../c2x-dbgsym_2.42+ds-1_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../c2x_2.42+ds-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../c2x_2.42+ds-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3828468 and its subdirectories
I: Current time: Tue Mar 18 18:23:26 -12 2025
I: pbuilder-time-stamp: 1742365406
Wed Mar 19 06:23:28 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Wed Mar 19 06:23:28 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Wed Mar 19 06:24:07 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Wed Mar 19 06:24:08 UTC 2025 I: c2x_2.42+ds-1_arm64.changes:
Format: 1.8
Date: Mon, 17 Mar 2025 05:50:57 -0400
Source: c2x
Binary: c2x c2x-dbgsym
Architecture: arm64
Version: 2.42+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
c2x - converter between DFT electronic structure codes formats
Changes:
c2x (2.42+ds-1) unstable; urgency=medium
.
* New upstream version 2.42
Checksums-Sha1:
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0086b4fd1fee1278a6ce2523197cebfe0dac9691 4863 c2x_2.42+ds-1_arm64.buildinfo
12fd61477eac894e44348e90b3af75b0e97413ef 244112 c2x_2.42+ds-1_arm64.deb
Checksums-Sha256:
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d10d6cb5a264584395ed89f5921c46cb43883642bee0e92aa0efe3b0bc991971 4863 c2x_2.42+ds-1_arm64.buildinfo
47d07f23bd1116bcec26f26da5e1b1b01fbb6d7a2d403e11d2f4ca832861772a 244112 c2x_2.42+ds-1_arm64.deb
Files:
e318ca8cfaced749933ce2a1a366e373 419344 debug optional c2x-dbgsym_2.42+ds-1_arm64.deb
b3c814d294d8f8b2a9c2e4f166ab0c61 4863 science optional c2x_2.42+ds-1_arm64.buildinfo
f86637ee98ea16e53b6275ba051c1e57 244112 science optional c2x_2.42+ds-1_arm64.deb
Wed Mar 19 06:24:08 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_12-87041.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8tjvd5Vd/c2x_2.42+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8tjvd5Vd/c2x_2.42+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8tjvd5Vd/c2x_2.42+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8tjvd5Vd/b1/c2x_2.42+ds-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.8tjvd5Vd/b2/c2x_2.42+ds-1_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 232ms
CPU time consumed: 233ms
Wed Mar 19 06:24:09 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Wed Mar 19 06:24:09 UTC 2025 I: c2x from unstable built successfully and reproducibly on arm64.
Wed Mar 19 06:24:10 UTC 2025 I: Submitting .buildinfo files to external archives:
Wed Mar 19 06:24:10 UTC 2025 I: Submitting 8.0K b1/c2x_2.42+ds-1_arm64.buildinfo.asc
Wed Mar 19 06:24:11 UTC 2025 I: Submitting 8.0K b2/c2x_2.42+ds-1_arm64.buildinfo.asc
Wed Mar 19 06:24:12 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Mar 19 06:24:12 UTC 2025 I: Done submitting .buildinfo files.
Wed Mar 19 06:24:12 UTC 2025 I: Removing signed c2x_2.42+ds-1_arm64.buildinfo.asc files:
removed './b1/c2x_2.42+ds-1_arm64.buildinfo.asc'
removed './b2/c2x_2.42+ds-1_arm64.buildinfo.asc'