Sat Mar 29 06:56:44 UTC 2025 I: starting to build lmfit-py/unstable/arm64 on jenkins on '2025-03-29 06:56' Sat Mar 29 06:56:44 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/86225/console.log Sat Mar 29 06:56:44 UTC 2025 I: Downloading source for unstable/lmfit-py=1.3.3-1 --2025-03-29 06:56:44-- http://deb.debian.org/debian/pool/main/l/lmfit-py/lmfit-py_1.3.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2702 (2.6K) [text/prs.lines.tag] Saving to: ‘lmfit-py_1.3.3-1.dsc’ 0K .. 100% 385M=0s 2025-03-29 06:56:44 (385 MB/s) - ‘lmfit-py_1.3.3-1.dsc’ saved [2702/2702] Sat Mar 29 06:56:44 UTC 2025 I: lmfit-py_1.3.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lmfit-py Binary: python3-lmfit, python-lmfit-doc Architecture: all Version: 1.3.3-1 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Michael Hudson-Doyle , Homepage: https://lmfit.github.io/lmfit-py/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/lmfit-py Vcs-Git: https://salsa.debian.org/science-team/lmfit-py.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-matplotlib, python3-pandas, python3-pytest, python3-scipy, python3-tk Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-numpy3, dh-sequence-python3, dh-sequence-sphinxdoc , pybuild-plugin-pyproject, python3-all, python3-asteval (>= 1.0~), python3-dill , python3-ipython , python3-nbsphinx , python3-numpy (>= 1.19~), python3-pandas, python3-pytest , python3-pytest-cov , python3-scipy (>= 1.6~), python3-setuptools, python3-setuptools-scm, python3-sphinx , python3-sphinx-gallery , python3-sympy , python3-uncertainties (>= 3.2.2~) Package-List: python-lmfit-doc deb doc optional arch=all python3-lmfit deb python optional arch=all Checksums-Sha1: beaeda648fb417ea437502289d633d3b42a86069 632645 lmfit-py_1.3.3.orig.tar.gz cc4371e8360c4e88515ad842a0a70d92ccf1aabe 8088 lmfit-py_1.3.3-1.debian.tar.xz Checksums-Sha256: 73321e6b881f2f686235721a7dfc02af6bb0f030a25efeb66638f62b1c6053a1 632645 lmfit-py_1.3.3.orig.tar.gz 7dddf0b9217df182f24003d129eeb44345a1d14edee6fb72dc1cb306f5b01268 8088 lmfit-py_1.3.3-1.debian.tar.xz Files: 48f689a1036ba8107a7e69429b9f4da2 632645 lmfit-py_1.3.3.orig.tar.gz 770847e36eb8952db469290a18e8a5dc 8088 lmfit-py_1.3.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEtBU2D1kett1zr/uD0w3s0lmTIvwFAmfm1iUACgkQ0w3s0lmT Ivw0dg/9FMJvBxWS/s+Q3vDlhfAnWK1ESRR1DL4uH+wOTlh0GfKh/mkf9jzDJ+i3 zUEeQ3vSoS0me81Uwav2cv2zn6jwAe2wFpb+8/JWcjysdosLFFSP6DEMelVMpmV1 L8aSK1I3hWEE/LhMn84q3DYtHx0legTMh4EY452piITFJNlfVvYNwA2ObIJJknlS wP3cM90Td/1gTyavo/4cJeRqNmVTb35LJvOARHzK8aJy2vfTY/jEe+F+JxrfmR7t 8oi2e9dB8vgM3eMClX1NLSunfTfOaVNO5TKhG55QzFHdTNua2r25C14bslBqynFg LYHnyWRbuJ6Bn8t7TJfyY7qmvsveE6BxMVCIdobHWccEFfrnTTgYG8sf+hBteXU7 huENdQBi3+NiQ5oBXkTHT2I5v04avH4+3KFtwGj9yCVmyyQxaSTzfiD48nDl3owO Gj1Zssi4aLBdp0uIzOQnsUXkzSyIOmBt13liC6oS6adOC/bSctvKElhGShyvnVAQ sQ4o8GyGrP+jtGsX6j1QGvuROG89IIedi8rnzIHeNvGVHGs/pIsr82qSlM6BHldf vgHGBOGtj6GSE84LEFgwT5DKKYMRpsxN5TUB+znC5OtZ9rtG5ZIWmeUOY4TZkVqa jOobG2QoZgbEJZVFHGFoUcx/QYsdmG1ieN+9z8uEKyN/WG70n0s= =2YDQ -----END PGP SIGNATURE----- Sat Mar 29 06:56:44 UTC 2025 I: Checking whether the package is not for us Sat Mar 29 06:56:44 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Mar 29 06:56:44 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Mar 29 07:11:17 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 1 01:19:47 -12 2026 I: pbuilder-time-stamp: 1777641587 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lmfit-py_1.3.3-1.dsc] I: copying [./lmfit-py_1.3.3.orig.tar.gz] I: copying [./lmfit-py_1.3.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lmfit-py_1.3.3-1.dsc: unsupported subcommand dpkg-source: info: extracting lmfit-py in lmfit-py-1.3.3 dpkg-source: info: unpacking lmfit-py_1.3.3.orig.tar.gz dpkg-source: info: unpacking lmfit-py_1.3.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deactivate_test.patch dpkg-source: info: applying 0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch dpkg-source: info: applying exclude_test_for_32bit.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2112413/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='09b9c374575e4b569a8db8daf5d7192f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2112413' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0EolXhxo/pbuilderrc_r29y --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0EolXhxo/b1 --logfile b1/build.log lmfit-py_1.3.3-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2112413/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-sequence-numpy3, dh-sequence-python3, dh-sequence-sphinxdoc, pybuild-plugin-pyproject, python3-all, python3-asteval (>= 1.0~), python3-dill, python3-ipython, python3-nbsphinx, python3-numpy (>= 1.19~), python3-pandas, python3-pytest, python3-pytest-cov, python3-scipy (>= 1.6~), python3-setuptools, python3-setuptools-scm, python3-sphinx, python3-sphinx-gallery, python3-sympy, python3-uncertainties (>= 3.2.2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19919 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-asteval (>= 1.0~); however: Package python3-asteval is not installed. pbuilder-satisfydepends-dummy depends on python3-dill; however: Package python3-dill is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-nbsphinx; however: Package python3-nbsphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1.19~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.6~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-gallery; however: Package python3-sphinx-gallery is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy; however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.2.2~); however: Package python3-uncertainties is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libopenjp2-7{a} libpgm-5.3-0t64{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsodium23{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-tinycss2-common{a} python3{a} python3-alabaster{a} python3-all{a} python3-asteval{a} python3-asttokens{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-bleach{a} python3-brotli{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dill{a} python3-docutils{a} python3-executing{a} python3-fastjsonschema{a} python3-fonttools{a} python3-fs{a} python3-html5lib{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-client{a} python3-jupyter-core{a} python3-jupyterlab-pygments{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-matplotlib-inline{a} python3-minimal{a} python3-mistune{a} python3-more-itertools{a} python3-mpmath{a} python3-nbclient{a} python3-nbconvert{a} python3-nbformat{a} python3-nbsphinx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pandocfilters{a} python3-parso{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-psutil{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-gallery{a} python3-stack-data{a} python3-sympy{a} python3-tinycss2{a} python3-tk{a} python3-toml{a} python3-tornado{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-wcwidth{a} python3-webencodings{a} python3-wheel{a} python3-zipp{a} python3-zmq{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx optipng pandoc python3-bottleneck python3-cssselect python3-fqdn python3-isoduration python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-sphinxcontrib.bibtex python3-tables python3-uritemplate python3-webcolors python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 232 newly installed, 0 to remove and 0 not upgraded. Need to get 122 MB of archives. After unpacking 521 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.2-2 [853 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.2-2 [1995 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-1 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.2-2 [1888 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.2-2 [746 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [136 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-19 [361 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3596 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-3 [337 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-3 [103 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-3 [43.5 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.47-1.1 [274 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.2 [318 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.2 [387 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B] Get: 59 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250308 [115 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.3-1 [190 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-4 [78.5 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.0-2 [1424 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1+b1 [442 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3.1 [173 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-hotkeys all 0.2.0-1 [12.6 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 96 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-metadata all 12-4 [6532 B] Get: 97 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1+b2 [205 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2 [190 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1+b1 [152 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libsodium23 arm64 1.0.18-1+b2 [121 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-2 [325 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.2 [221 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libzmq5 arm64 4.3.5-1+b3 [253 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-toml all 0.10.2-1 [16.2 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-build all 1.2.2-1 [36.0 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 pybuild-plugin-pyproject all 6.20250308 [11.7 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.10.1+dfsg1-2 [2736 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python-tinycss2-common all 1.4.0-2 [44.7 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.2-2 [1044 B] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-asteval all 1.0.6-2 [22.0 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-asttokens all 3.0.0-1 [20.1 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-attr all 25.3.0-1 [69.5 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-babel all 2.17.0-1 [117 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-webencodings all 0.5.1-5 [11.1 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-html5lib all 1.2-2 [92.1 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-bleach all 6.2.0-1 [51.2 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-soupsieve all 2.6-1 [38.3 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-bs4 all 4.13.3-2 [166 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-cffi-backend arm64 1.17.1-2+b2 [92.7 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.1-1+b1 [119 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1+b1 [190 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-coverage arm64 7.6.0+dfsg1-2+b2 [175 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-dill all 0.3.9-1 [83.5 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-roman all 5.0-1 [10.6 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-executing all 2.2.0-0.1 [24.5 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-7 [95.2 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.1-1+b1 [1139 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-2 [25.3 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.15.2-7 [14.8 MB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-5 [4148 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.55.3-2+b1 [1381 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 169 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 173 http://deb.debian.org/debian unstable/main arm64 python3-parso all 0.8.4-1 [67.8 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 python3-typeshed all 0.0~git20241223.ea91db2-1 [1530 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib-inline all 0.1.7-1 [9032 B] Get: 178 http://deb.debian.org/debian unstable/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 python3-prompt-toolkit all 3.0.50-1 [278 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 python3-pexpect all 4.9-3 [55.6 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 186 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 python3-ipython all 8.30.0-2 [568 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 python3-rpds-py arm64 0.21.0-2+b1 [226 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 python3-referencing all 0.35.1-2 [23.5 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 197 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 python3-jupyter-core all 5.7.2-5 [35.3 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 python3-psutil arm64 7.0.0-1 [220 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 python3-tornado arm64 6.4.2-1 [349 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 python3-zmq arm64 26.2.1-1+b1 [167 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 python3-jupyter-client all 8.6.3-2 [92.4 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 python3-jupyterlab-pygments all 0.2.2-3 [6096 B] Get: 204 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-5+b1 [495 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.2-2 [105 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.2-1 [9516 B] Get: 208 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.1.0-5+b1 [81.8 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-2 [23.7 MB] Get: 211 http://deb.debian.org/debian unstable/main arm64 python3-mistune all 3.0.2-2 [33.2 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 python3-nbclient all 0.8.0-2 [62.2 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 python3-tinycss2 all 1.4.0-2 [25.0 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 python3-pandocfilters all 1.5.1-1 [23.7 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 python3-nbconvert all 7.16.6-1 [160 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 sphinx-common all 8.1.3-5 [617 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.3.0-2 [114 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 python3-sphinx all 8.1.3-5 [468 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 python3-nbsphinx all 0.9.5+ds-1 [39.9 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 python3-pytz all 2025.1-3 [150 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2025.1-3 [4004 B] Get: 225 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-8+b1 [3872 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.5-1 [250 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 python3-setuptools-scm all 8.2.1-1 [41.2 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 python3-sphinx-gallery all 0.17.1-1 [401 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 python3-uncertainties all 3.2.2-1 [54.7 kB] Fetched 122 MB in 2s (57.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19919 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_arm64.deb ... Unpacking python3.13 (3.13.2-2) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/lmfit-py-1.3.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lmfit-py_1.3.3-1_source.changes dpkg-buildpackage: info: source package lmfit-py dpkg-buildpackage: info: source version 1.3.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Roland Mas dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.3' find . -name "*.pickle" -delete rm -rf doc/examples if [ -f lmfit/version.py.orig ] ; then mv lmfit/version.py.orig lmfit/version.py ; fi dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars debian/files rm -fr -- debian/python3-lmfit/ debian/tmp/ debian/python-lmfit-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.3' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.3' cp -a lmfit/version.py lmfit/version.py.orig dh_auto_configure pybuild --configure -i python{version} -p 3.13 make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.3' dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit * Building wheel... running bdist_wheel running build running build_py creating build/lib/lmfit copying lmfit/version.py -> build/lib/lmfit copying lmfit/printfuncs.py -> build/lib/lmfit copying lmfit/parameter.py -> build/lib/lmfit copying lmfit/models.py -> build/lib/lmfit copying lmfit/model.py -> build/lib/lmfit copying lmfit/minimizer.py -> build/lib/lmfit copying lmfit/lineshapes.py -> build/lib/lmfit copying lmfit/jsonutils.py -> build/lib/lmfit copying lmfit/confidence.py -> build/lib/lmfit copying lmfit/_ampgo.py -> build/lib/lmfit copying lmfit/__init__.py -> build/lib/lmfit running egg_info writing lmfit.egg-info/PKG-INFO writing dependency_links to lmfit.egg-info/dependency_links.txt writing requirements to lmfit.egg-info/requires.txt writing top-level names to lmfit.egg-info/top_level.txt reading manifest file 'lmfit.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS.txt' writing manifest file 'lmfit.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/lmfit copying build/lib/lmfit/__init__.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/confidence.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/minimizer.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/model.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/models.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/parameter.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-aarch64/wheel/./lmfit copying build/lib/lmfit/version.py -> build/bdist.linux-aarch64/wheel/./lmfit running install_egg_info Copying lmfit.egg-info to build/bdist.linux-aarch64/wheel/./lmfit-1.3.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/lmfit-1.3.3.dist-info/WHEEL creating '/build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/.tmp-b66gtll6/lmfit-1.3.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'lmfit/__init__.py' adding 'lmfit/_ampgo.py' adding 'lmfit/confidence.py' adding 'lmfit/jsonutils.py' adding 'lmfit/lineshapes.py' adding 'lmfit/minimizer.py' adding 'lmfit/model.py' adding 'lmfit/models.py' adding 'lmfit/parameter.py' adding 'lmfit/printfuncs.py' adding 'lmfit/version.py' adding 'lmfit-1.3.3.dist-info/AUTHORS.txt' adding 'lmfit-1.3.3.dist-info/LICENSE' adding 'lmfit-1.3.3.dist-info/METADATA' adding 'lmfit-1.3.3.dist-info/WHEEL' adding 'lmfit-1.3.3.dist-info/top_level.txt' adding 'lmfit-1.3.3.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built lmfit-1.3.3-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.13 I: pybuild pybuild:308: cp -r NIST_STRD examples /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build I: pybuild base:311: cd /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build configfile: pyproject.toml plugins: cov-5.0.0, typeguard-4.4.2 collected 671 items tests/test_1variable.py . [ 0%] tests/test_NIST_Strd.py ........................... [ 4%] tests/test_algebraic_constraint.py .... [ 4%] tests/test_ampgo.py ............ [ 6%] tests/test_basicfit.py . [ 6%] tests/test_basinhopping.py ..... [ 7%] tests/test_bounded_jacobian.py .. [ 7%] tests/test_bounds.py . [ 7%] tests/test_brute.py ............ [ 9%] tests/test_builtin_models.py ....... [ 10%] tests/test_confidence.py ............. [ 12%] tests/test_covariance_matrix.py ..ssssssss. [ 14%] tests/test_custom_independentvar.py . [ 14%] tests/test_default_kws.py . [ 14%] tests/test_dual_annealing.py ... [ 15%] tests/test_itercb.py .................... [ 18%] tests/test_jacobian_pickling.py .. [ 18%] tests/test_jsonutils.py ................. [ 20%] tests/test_least_squares.py ...... [ 21%] tests/test_lineshapes.py ............................................... [ 28%] .......................................... [ 35%] tests/test_manypeaks_speed.py . [ 35%] tests/test_max_nfev.py ........................... [ 39%] tests/test_minimizer.py ............... [ 41%] tests/test_model.py .................................................... [ 49%] ........................................................................ [ 59%] ......s....s.................................................. [ 69%] tests/test_model_saveload.py ........................ [ 72%] tests/test_model_uncertainties.py ....... [ 73%] tests/test_models.py ........ [ 74%] tests/test_multidatasets.py . [ 75%] tests/test_nose.py ...................s...... [ 78%] tests/test_pandas.py .. [ 79%] tests/test_parameter.py ................................................ [ 86%] .......... [ 87%] tests/test_parameters.py ................................ [ 92%] tests/test_params_uvars.py .... [ 93%] tests/test_printfuncs.py ............................s...... [ 98%] tests/test_shgo.py ...... [ 99%] tests/test_stepmodel.py .... [100%] =============================== warnings summary =============================== tests/test_manypeaks_speed.py:15 /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build/tests/test_manypeaks_speed.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(max_runs=5) tests/test_model_saveload.py::test_load_legacy_modelresult /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'gaussian', saved with Python version 3.10 warnings.warn(msg) tests/test_model_saveload.py::test_load_model_versions /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.10 warnings.warn(msg) tests/test_model_saveload.py::test_load_model_versions /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.11 warnings.warn(msg) tests/test_model_saveload.py::test_load_model_versions /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.12 warnings.warn(msg) tests/test_nose.py::CommonMinimizerTest::test_emcee /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_float /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_output /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_nose.py::CommonMinimizerTest::test_emcee_seed /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) tests/test_parameters.py::test_dumps_loads_parameters_usersyms /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:30: DeprecationWarning: numpy.core is deprecated and has been renamed to numpy._core. The numpy._core namespace contains private NumPy internals and its use is discouraged, as NumPy internals can change without warning in any release. In practice, most real-world usage of numpy.core is to access functionality in the public NumPy API. If that is the case, use the public NumPy API. If not, you are using NumPy internals. If you would still like to access an internal attribute, use numpy._core.half. t = getattr(module, oname, None) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.13.2-final-0 ----------- Coverage HTML written to dir htmlcov =========== 659 passed, 12 skipped, 17 warnings in 337.01s (0:05:37) =========== I: pybuild pybuild:334: rm -fr /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build/NIST_STRD /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build/examples; find /build/reproducible-path/lmfit-py-1.3.3/.pybuild/cpython3_3.13_lmfit/build -name "*.sav" -delete rm -fr -- /tmp/dh-xdg-rundir-0Sk4ZcJA create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars rm -fr -- debian/.debhelper/generated/python3-lmfit/ debian/python3-lmfit/ debian/tmp/ debian/.debhelper/generated/python-lmfit-doc/ debian/python-lmfit-doc/ dh_auto_install -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/lmfit-py-1.3.3/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/lmfit-py-1.3.3/debian/tmp I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.3' mv examples/example_emcee_Model_interface.py examples/nodoc_example_emcee_Model_interface.py cp doc/sphinx/ext_mathjax.py doc/extensions.py PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ .pybuild/html # HTML generator Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files. loading intersphinx inventory 'py' from https://docs.python.org/3/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.scipy.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'numpy.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'matplotlib' from https://matplotlib.org/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'matplotlib.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'sympy' from https://docs.sympy.org/latest/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.sympy.org/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.sympy.org', port=443): Max retries exceeded with url: /latest/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.sympy.org' ([Errno -3] Temporary failure in name resolution)")) loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://pandas.pydata.org/pandas-docs/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='pandas.pydata.org', port=443): Max retries exceeded with url: /pandas-docs/stable/objects.inv (Caused by NameResolutionError(": Failed to resolve 'pandas.pydata.org' ([Errno -3] Temporary failure in name resolution)")) generating gallery... generating gallery for examples... [ 5%] example_use_pandas.py generating gallery for examples... [ 10%] example_expression_model.py generating gallery for examples... [ 14%] example_fit_with_inequality.py generating gallery for examples... [ 19%] example_diffev.py generating gallery for examples... [ 24%] example_fit_with_bounds.py generating gallery for examples... [ 29%] example_fit_with_algebraic_constraint.py generating gallery for examples... [ 33%] example_reduce_fcn.py generating gallery for examples... [ 38%] example_sympy.py generating gallery for examples... [ 43%] example_basinhopping.py generating gallery for examples... [ 48%] example_fit_multi_datasets.py generating gallery for examples... [ 52%] example_fit_multi_datasets_Model-interface.py generating gallery for examples... [ 57%] example_Model_interface.py generating gallery for examples... [ 62%] example_fit_with_derivfunc.py generating gallery for examples... [ 67%] example_detect_outliers.py generating gallery for examples... [ 71%] example_uncertainties_y_and_x.py generating gallery for examples... [ 76%] example_complex_resonator_model.py generating gallery for examples... [ 81%] lmfit_emcee_model_selection.py generating gallery for examples... [ 86%] example_fit_jacobian_benchmark.py generating gallery for examples... [ 90%] example_confidence_interval.py generating gallery for examples... [ 95%] example_two_dimensional_peak.py generating gallery for examples... [100%] example_brute.py computation time summary: - ../examples/example_brute.py: 47.95 sec 0.0 MB - ../examples/example_confidence_interval.py: 46.49 sec 0.0 MB - ../examples/example_two_dimensional_peak.py: 7.26 sec 0.0 MB - ../examples/example_basinhopping.py: 7.25 sec 0.0 MB - ../examples/example_fit_jacobian_benchmark.py: 4.84 sec 0.0 MB - ../examples/example_sympy.py: 3.82 sec 0.0 MB - ../examples/example_detect_outliers.py: 3.48 sec 0.0 MB - ../examples/example_complex_resonator_model.py: 2.13 sec 0.0 MB - ../examples/example_diffev.py: 1.40 sec 0.0 MB - ../examples/example_reduce_fcn.py: 1.19 sec 0.0 MB - ../examples/example_fit_with_bounds.py: 1.08 sec 0.0 MB - ../examples/example_fit_with_algebraic_constraint.py: 0.98 sec 0.0 MB - ../examples/example_use_pandas.py: 0.78 sec 0.0 MB - ../examples/example_fit_with_inequality.py: 0.78 sec 0.0 MB - ../examples/example_uncertainties_y_and_x.py: 0.77 sec 0.0 MB - ../examples/example_Model_interface.py: 0.76 sec 0.0 MB - ../examples/example_expression_model.py: 0.70 sec 0.0 MB - ../examples/example_fit_with_derivfunc.py: 0.57 sec 0.0 MB - ../examples/example_fit_multi_datasets_Model-interface.py: 0.51 sec 0.0 MB - ../examples/example_fit_multi_datasets.py: 0.41 sec 0.0 MB - ../examples/lmfit_emcee_model_selection.py: 0.00 sec 0.0 MB building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 14 source files that are out of date updating environment: [new config] 36 added, 0 changed, 0 removed reading sources... 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[100%] whatsnew /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:27: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from lmfit.models import LinearModel, LorentzianModel peak = LorentzianModel() background = LinearModel() model = peak + background [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:289: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import ExpressionModel mod = ExpressionModel('off + amp * exp(-x/x0) * sin(x*phase)') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:303: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, sin x = linspace(0, 10, 501) params = mod.make_params(off=0.25, amp=1.0, x0=2.0, phase=0.04) y = mod.eval(params, x=x) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:324: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: script = """ def mycurve(x, amp, cen, sig): loren = lorentzian(x, amplitude=amp, center=cen, sigma=sig) gauss = gaussian(x, amplitude=amp, center=cen, sigma=sig) return log(loren) * gradient(gauss) / gradient(x) """ [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:335: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = ExpressionModel('mycurve(x, height, mid, wid)', init_script=script, independent_vars=['x']) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:354: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from numpy import loadtxt from lmfit.models import GaussianModel data = loadtxt('test_peak.dat') x = data[:, 0] y = data[:, 1] mod = GaussianModel() pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:374: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:385: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' import matplotlib.pyplot as plt plt.plot(x, y, '-') plt.plot(x, out.best_fit, '-', label='Gaussian Model') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:406: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import LorentzianModel mod = LorentzianModel() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:415: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:424: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, '-') plt.plot(x, out.best_fit, '-', label='Lorentzian Model') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:435: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import VoigtModel mod = VoigtModel() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:443: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:454: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, '-') axes[0].plot(x, out.best_fit, '-', label='Voigt Model\ngamma constrained') axes[0].legend() # free gamma parameter pars['gamma'].set(value=0.7, vary=True, expr='') out_gamma = mod.fit(y, pars, x=x) axes[1].plot(x, y, '-') axes[1].plot(x, out_gamma.best_fit, '-', label='Voigt Model\ngamma unconstrained') axes[1].legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:485: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out_gamma.fit_report(min_correl=0.25)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:522: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_stepmodel.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:533: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:540: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y) plt.plot(x, out.init_fit, '--', label='initial fit') plt.plot(x, out.best_fit, '-', label='best fit') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:563: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:579: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:590: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y) axes[0].plot(x, init, '--', label='initial fit') axes[0].plot(x, out.best_fit, '-', label='best fit') axes[0].legend() comps = out.eval_components(x=x) axes[1].plot(x, y) axes[1].plot(x, comps['g1_'], '--', label='Gaussian component 1') axes[1].plot(x, comps['g2_'], '--', label='Gaussian component 2') axes[1].plot(x, comps['exp_'], '--', label='Exponential component') axes[1].legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:632: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss2.py :hide-code: :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:638: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y) plt.plot(x, out.init_fit, '--', label='initial fit') plt.plot(x, out.best_fit, '-', label='best fit') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:652: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:689: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: import numpy as np import matplotlib.pyplot as plt from lmfit.models import SplineModel, GaussianModel data = np.loadtxt('test_splinepeak.dat') x = data[:, 0] y = data[:, 1] plt.plot(x, y, label='data') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:706: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:717: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: model = GaussianModel(prefix='peak_') params = model.make_params(amplitude=8, center=16, sigma=1) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:731: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_xvals = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25]) bkg = SplineModel(prefix='bkg_', xknots=knot_xvals) params.update(bkg.guess(y, x)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:751: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: model = model + bkg params['peak_amplitude'].min = 0 params['peak_center'].min = 10 params['peak_center'].max = 20 out = model.fit(y, params, x=x) print(out.fit_report(min_correl=0.3)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:770: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.3)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:786: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = out.eval_components() plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') plt.legend() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:797: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:810: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')]) plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:818: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')]) plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:836: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_xvals1 = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25]) knot_xvals2 = np.array([1, 3, 5, 7, 9, 11, 13, 16, 19, 21, 23, 25]) knot_xvals3 = np.array([1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25]) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:877: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: plt.plot(x, y, 'o', label='data') for nknots in (10, 15, 20, 25): model = SplineModel(prefix='bkg_', xknots=np.linspace(0, 25, nknots)) params = model.guess(y, x) out = model.fit(y, params, x=x) plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst:894: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o', label='data') for nknots in (10, 15, 20, 25): model = SplineModel(prefix='bkg_', xknots=np.linspace(0, 25, nknots)) params = model.guess(y, x) out = model.fit(y, params, x=x) plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:47: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit x = np.linspace(0.3, 10, 100) np.random.seed(0) y = 1/(0.1*x) + 2 + 0.1*np.random.randn(x.size) pars = lmfit.Parameters() pars.add_many(('a', 0.1), ('b', 1)) def residual(p): return 1/(p['a']*x) + p['b'] - y [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:68: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mini = lmfit.Minimizer(residual, pars) result = mini.minimize() print(lmfit.fit_report(result.params)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:78: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ci = lmfit.conf_interval(mini, result) lmfit.printfuncs.report_ci(ci) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:105: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: for p in result.params: result.params[p].stderr = abs(result.params[p].value * 0.1) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:144: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: # import matplotlib.pyplot as plt import numpy as np from lmfit import conf_interval, conf_interval2d, report_ci from lmfit.lineshapes import gaussian from lmfit.models import GaussianModel, LinearModel sigma_levels = [1, 2, 3] rng = np.random.default_rng(seed=102) ######################### # set up data -- deliberately adding imperfections and # a small amount of non-Gaussian noise npts = 501 x = np.linspace(1, 100, num=npts) noise = rng.normal(scale=0.3, size=npts) + 0.2*rng.f(3, 9, size=npts) y = (gaussian(x, amplitude=83, center=47., sigma=5.) + 0.02*x + 4 + 0.25*np.cos((x-20)/8.0) + noise) mod = GaussianModel() + LinearModel() params = mod.make_params(amplitude=100, center=50, sigma=5, slope=0, intecept=2) out = mod.fit(y, params, x=x) print(out.fit_report()) ######################### # run conf_intervale, print report sigma_levels = [1, 2, 3] ci = conf_interval(out, out, sigmas=sigma_levels) print("## Confidence Report:") report_ci(ci) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:191: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ######################### # plot initial fit colors = ('#2030b0', '#b02030', '#207070') fig, axes = plt.subplots(2, 3, figsize=(15, 9.5)) axes[0, 0].plot(x, y, 'o', markersize=3, label='data', color=colors[0]) axes[0, 0].plot(x, out.best_fit, label='fit', color=colors[1]) axes[0, 0].set_xlabel('x') axes[0, 0].set_ylabel('y') axes[0, 0].legend() aix, aiy = 0, 0 nsamples = 50 explicitly_calculate_sigma = True for pairs in (('sigma', 'amplitude'), ('intercept', 'amplitude'), ('slope', 'intercept'), ('slope', 'center'), ('sigma', 'center')): xpar, ypar = pairs if explicitly_calculate_sigma: print(f"Generating chi-square map for {pairs}") c_x, c_y, chi2_mat = conf_interval2d(out, out, xpar, ypar, nsamples, nsamples, nsigma=3.5, chi2_out=True) # explicitly calculate sigma matrix: sigma increases chi_square # from chi_square_best # to chi_square + sigma**2 * reduced_chi_square # so: sigma = sqrt((chi2-chi2_best)/ reduced_chi_square) chi2_min = chi2_mat.min() sigma_mat = np.sqrt((chi2_mat-chi2_min)/out.redchi) else: print(f"Generating sigma map for {pairs}") # or, you could just calculate the matrix of probabilities as: c_x, c_y, sigma_mat = conf_interval2d(out, out, xpar, ypar, nsamples, nsamples, nsigma=3.5) aix += 1 if aix == 2: aix = 0 aiy += 1 ax = axes[aix, aiy] cnt = ax.contour(c_x, c_y, sigma_mat, levels=sigma_levels, colors=colors, linestyles='-') ax.clabel(cnt, inline=True, fmt=r"$\sigma=%.0f$", fontsize=13) # draw boxes for estimated uncertaties: # dotted : scaled stderr from initial fit # dashed : values found from conf_interval() xv = out.params[xpar].value xs = out.params[xpar].stderr yv = out.params[ypar].value ys = out.params[ypar].stderr cix = ci[xpar] ciy = ci[ypar] nc = len(sigma_levels) for i in sigma_levels: # dotted line: scaled stderr ax.plot((xv-i*xs, xv+i*xs, xv+i*xs, xv-i*xs, xv-i*xs), (yv-i*ys, yv-i*ys, yv+i*ys, yv+i*ys, yv-i*ys), linestyle='dotted', color=colors[i-1]) # dashed line: refined uncertainties from conf_interval xsp, xsm = cix[nc+i][1], cix[nc-i][1] ysp, ysm = ciy[nc+i][1], ciy[nc-i][1] ax.plot((xsm, xsp, xsp, xsm, xsm), (ysm, ysm, ysp, ysp, ysm), linestyle='dashed', color=colors[i-1]) ax.set_xlabel(xpar) ax.set_ylabel(ypar) ax.grid(True, color='#d0d0d0') plt.show() # [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:295: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:306: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_confidence_advanced.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:311: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: lmfit.report_fit(out2.params, min_correl=0.5) print('') lmfit.printfuncs.report_ci(ci) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:328: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a1', 't2', 30, 30) ctp = axes[0].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[0]) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a2', 't2', 30, 30) ctp = axes[1].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[1]) axes[1].set_xlabel('a2') axes[1].set_ylabel('t2') plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:362: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst:381: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:43: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars.add('frac_curve1', value=0.5, min=0, max=1) pars.add('frac_curve2', expr='1-frac_curve1') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:85: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('amp_1', value=0.5, min=0, max=1) pars.add('cen_1', value=2.2) pars.add('wid_1', value=0.2) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:94: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('amp_2', expr='(2.0 - amp_1**2)') pars.add('wid_2', expr='sqrt(pi)*wid_1') pars.add('cen_2', expr='cen_1 * wid_2 / max(wid_1, 0.001)') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:103: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('param_a', value=1) pars.add('param_b', value=2) pars.add('test_val', value=100) pars.add('bounded', expr='param_a if test_val/2. > 100 else param_b') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:113: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: if pars['test_val'].value/2. > 100: bounded = pars['param_a'].value else: bounded = pars['param_b'].value [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:132: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('x', value=5, vary=True) pars.add('delta', value=5, max=10, vary=True) pars.add('y', expr='delta-x') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:175: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def mylorentzian(x, amp, cen, wid): "lorentzian function: wid = half-width at half-max" return (amp / (1 + ((x-cen) / wid)**2)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:185: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars._asteval.symtable['lorentzian'] = mylorentzian [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:194: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Minimizer def userfcn(x, params): pass fitter = Minimizer(userfcn, pars) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst:209: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() fitter = Minimizer(userfcn, pars) fitter.params._asteval.symtable['lorentzian'] = mylorentzian [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/faq.rst:239: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit def quad_off(x, x0, a, b, c): model = a + b * x**2 model[np.where(x < x0)] = c return model x0 = 19 b = 0.02 a = 2.0 xdat = np.linspace(0, 100, 101) ydat = a + b * xdat**2 ydat[np.where(xdat < x0)] = a + b * x0**2 ydat += np.random.normal(scale=0.1, size=xdat.size) mod = lmfit.Model(quad_off) pars = mod.make_params(x0=22, a=1, b=1, c=1) result = mod.fit(ydat, pars, x=xdat) print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/faq.rst:282: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from scipy.special import erf import lmfit def quad_off(x, x0, a, b, c): m1 = a + b * x**2 m2 = c * np.ones(len(x)) # step up from 0 to 1 at x0: (erf(x-x0)+1)/2 # step down from 1 to 0 at x0: (1-erf(x-x0))/2 model = m1 * (erf(x-x0)+1)/2 + m2 * (1-erf(x-x0))/2 return model x0 = 19 b = 0.02 a = 2.0 xdat = np.linspace(0, 100, 101) ydat = a + b * xdat**2 ydat[np.where(xdat < x0)] = a + b * x0**2 ydat += np.random.normal(scale=0.1, size=xdat.size) mod = lmfit.Model(quad_off) pars = mod.make_params(x0=22, a=1, b=1, c=1) result = mod.fit(ydat, pars, x=xdat) print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:64: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sign, sin, pi def residual(pars, x, data=None, eps=None): # unpack parameters: extract .value attribute for each parameter parvals = pars.valuesdict() period = parvals['period'] shift = parvals['shift'] decay = parvals['decay'] if abs(shift) > pi/2: shift = shift - sign(shift)*pi if abs(period) < 1.e-10: period = sign(period)*1.e-10 model = parvals['amp'] * sin(shift + x/period) * exp(-x*x*decay*decay) if data is None: return model if eps is None: return model - data return (model-data) / eps [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:97: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: from lmfit import Parameter, Parameters params = Parameters() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:104: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['period'] = Parameter(name='period', value=2, min=1.e-10) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:110: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: period = 1 [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:115: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: if abs(period) < 1.e-10: period = sign(period)*1.e-10 [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:521: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_fitting_withreport.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:526: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(fit_report(out)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:535: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('-------------------------------') print('Parameter Value Stderr') for name, param in out.params.items(): print(f'{name:7s} {param.value:11.5f} {param.stderr:11.5f}') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:643: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:656: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import matplotlib.pyplot as plt import numpy as np import lmfit x = np.linspace(1, 10, 250) np.random.seed(0) y = 3.0 * np.exp(-x / 2) - 5.0 * np.exp(-(x - 0.1) / 10.) + 0.1 * np.random.randn(x.size) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:669: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: p = lmfit.Parameters() p.add_many(('a1', 4.), ('a2', 4.), ('t1', 3.), ('t2', 3., True)) def residual(p): v = p.valuesdict() return v['a1'] * np.exp(-x / v['t1']) + v['a2'] * np.exp(-(x - 0.1) / v['t2']) - y [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:683: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi = lmfit.minimize(residual, p, method='nelder', nan_policy='omit') lmfit.printfuncs.report_fit(mi.params, min_correl=0.5) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:690: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(x, y, 'o') plt.plot(x, residual(mi.params) + y, label='best fit') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:717: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi.params.add('__lnsigma', value=np.log(0.1), min=np.log(0.001), max=np.log(2)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:724: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: res = lmfit.minimize(residual, method='emcee', nan_policy='omit', burn=300, steps=1000, thin=20, params=mi.params, is_weighted=False, progress=False) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:743: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(res.acceptance_fraction, 'o') plt.xlabel('walker') plt.ylabel('acceptance fraction') plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:753: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import corner emcee_plot = corner.corner(res.flatchain, labels=res.var_names, truths=list(res.params.valuesdict().values())) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:765: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('median of posterior probability distribution') print('--------------------------------------------') lmfit.report_fit(res.params) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:786: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: highest_prob = np.argmax(res.lnprob) hp_loc = np.unravel_index(highest_prob, res.lnprob.shape) mle_soln = res.chain[hp_loc] for i, par in enumerate(p): p[par].value = mle_soln[i] print('\nMaximum Likelihood Estimation from emcee ') print('-------------------------------------------------') print('Parameter MLE Value Median Value Uncertainty') fmt = ' {:5s} {:11.5f} {:11.5f} {:11.5f}'.format for name, param in p.items(): print(fmt(name, param.value, res.params[name].value, res.params[name].stderr)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst:810: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('\nError estimates from emcee:') print('------------------------------------------------------') print('Parameter -2sigma -1sigma median +1sigma +2sigma') for name in p.keys(): quantiles = np.percentile(res.flatchain[name], [2.275, 15.865, 50, 84.135, 97.275]) median = quantiles[2] err_m2 = quantiles[0] - median err_m1 = quantiles[1] - median err_p1 = quantiles[3] - median err_p2 = quantiles[4] - median fmt = ' {:5s} {:8.4f} {:8.4f} {:8.4f} {:8.4f} {:8.4f}'.format print(fmt(name, err_m2, err_m1, median, err_p1, err_p2)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/intro.rst:43: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin def residual(variables, x, data, uncertainty): """Model a decaying sine wave and subtract data.""" amp = variables[0] phaseshift = variables[1] freq = variables[2] decay = variables[3] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / uncertainty [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/intro.rst:60: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import linspace, random from scipy.optimize import leastsq # generate synthetic data with noise x = linspace(0, 100) noise = random.normal(size=x.size, scale=0.2) data = 7.5 * sin(x*0.22 + 2.5) * exp(-x*x*0.01) + noise # generate experimental uncertainties uncertainty = abs(0.16 + random.normal(size=x.size, scale=0.05)) variables = [10.0, 0.2, 3.0, 0.007] out = leastsq(residual, variables, args=(x, data, uncertainty)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/intro.rst:123: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin from lmfit import minimize, Parameters def residual(params, x, data, uncertainty): amp = params['amp'] phaseshift = params['phase'] freq = params['frequency'] decay = params['decay'] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / uncertainty params = Parameters() params.add('amp', value=10) params.add('decay', value=0.007) params.add('phase', value=0.2) params.add('frequency', value=3.0) out = minimize(residual, params, args=(x, data, uncertainty)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/intro.rst:158: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import create_params params = create_params(amp=10, decay=0.007, phase=0.2, frequency=3.0) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/intro.rst:176: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = Parameters() params.add('amp', value=10, vary=False) params.add('decay', value=0.007, min=0.0) params.add('phase', value=0.2) params.add('frequency', value=3.0, max=10) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/intro.rst:192: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = create_params(amp={'value': 10, 'vary': False}, decay={'value': 0.007, 'min': 0}, phase=0.2, frequency={'value': 3.0, 'max':10}) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/intro.rst:201: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['amp'].vary = False params['decay'].min = 0.10 [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:49: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:57: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, random def gaussian(x, amp, cen, wid): return amp * exp(-(x-cen)**2 / wid) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:69: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from scipy.optimize import curve_fit x = linspace(-10, 10, 101) y = gaussian(x, 2.33, 0.21, 1.51) + random.normal(0, 0.2, x.size) init_vals = [1, 0, 1] # for [amp, cen, wid] best_vals, covar = curve_fit(gaussian, x, y, p0=init_vals) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:90: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Model gmodel = Model(gaussian) print(f'parameter names: {gmodel.param_names}') print(f'independent variables: {gmodel.independent_vars}') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:120: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:130: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params(cen=0.3, amp=3, wid=1.25) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:144: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: x_eval = linspace(0, 10, 201) y_eval = gmodel.eval(params, x=x_eval) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:151: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: y_eval = gmodel.eval(x=x_eval, cen=6.5, amp=100, wid=2.0) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:160: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, params, x=x) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:166: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, x=x, cen=0.5, amp=10, wid=2.0) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:173: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:180: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:190: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o') plt.plot(x, result.init_fit, '--', label='initial fit') plt.plot(x, result.best_fit, '-', label='best fit') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:204: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: gmodel = Model(gaussian) result = gmodel.fit(y, params, x=x, amp=5, cen=5, wid=1) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:350: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from lmfit import Model def decay(t, tau, N): return N*np.exp(-t/tau) decay_model = Model(decay) print(f'independent variables: {decay_model.independent_vars}') params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:375: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: decay_model = Model(decay, independent_vars=['tau']) print(f'independent variables: {decay_model.independent_vars}') params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:407: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def decay2(t, tau, N=10, check_positive=False): if check_positive: arg = abs(t)/max(1.e-9, abs(tau)) else: arg = t/tau return N*np.exp(arg) mod = Model(decay2) print(f'independent variables: {mod.independent_vars}') params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:440: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def voigt(x, amplitude=1.0, center=0.0, sigma=1.0, gamma=None): """Return a 1-dimensional Voigt function. ... """ if gamma is None: gamma = sigma z = (x-center + 1j*gamma) / max(tiny, (sigma*s2)) return amplitude*real(wofz(z)) / max(tiny, (sigma*s2pi)) mod = Model(voigt) print(f'independent variables: {mod.independent_vars}') params = mod.make_params(amplitude=10, center=5, sigma=2) # or params2 = mod.make_params(amplitude=10, center=5, sigma=2, gamma=1.5) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:483: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, amplitude=1, center=0, sigma=1): # function definition, for now just ``pass`` pass mod = Model(myfunc, prefix='f1_') params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:530: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a=1, b=0): return a*x + 10*a - b [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:537: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a, b): return a*x + 10*a - b [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:556: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) # simply supply initial values pars = mod.make_params(a=3, b=0.5) # supply initial values, attributes for bounds, etcetera: pars_bounded = mod.make_params(a=dict(value=3, min=0), b=dict(value=0.5, vary=False)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:576: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import create_params mod = Model(myfunc) # simply supply initial values pars = create_params(a=3, b=0.5) # supply initial values and attributes for bounds, etc: pars_bounded = create_params(a=dict(value=3, min=0), b=dict(value=0.5, vary=False)) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:600: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: x = linspace(0, 10, 100) y_eval = mod.eval(x=x, a=7.0, b=-2.0) y_sim = y_eval + random.normal(0, 0.2, x.size) out = mod.fit(y_sim, pars, x=x, a=3.0, b=0.0) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:631: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) mod.set_param_hint('bounded_parameter', min=0, max=1.0) pars = mod.make_params() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:643: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('Parameter hints:') for pname, par in mod.param_hints.items(): print(pname, par) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:658: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) mod.set_param_hint('wid', min=0) mod.set_param_hint('fwhm', expr='2.3548*wid') params = mod.make_params(amp={'value': 10, 'min':0.1, 'max':2000}, cen=5.5, wid=1.25) params.pretty_print() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:775: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodel.py [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:779: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodel.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1077: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: :hide-code: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1081: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: dely = result.eval_uncertainty(sigma=3) plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label=r'3-$\sigma$ uncertainty band') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1092: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o') plt.plot(x, result.init_fit, '--', label='initial fit') plt.plot(x, result.best_fit, '-', label='best fit') plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label=r'3-$\sigma$ uncertainty band') plt.legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1116: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_uncertainty2.py [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1126: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_uncertainty_pred.py [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1169: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_parameters_uvars.py [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1201: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodelresult.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1206: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodelresult.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1228: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def gaussian_plus_line(x, amp, cen, wid, slope, intercept): """line + 1-d gaussian""" gauss = (amp / (sqrt(2*pi) * wid)) * exp(-(x-cen)**2 / (2*wid**2)) line = slope*x + intercept return gauss + line [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1239: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian_plus_line) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1251: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def line(x, slope, intercept): """a line""" return slope*x + intercept [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1259: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) + Model(line) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1265: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_two_components.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1270: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1277: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'o') axes[0].plot(x, result.init_fit, '--', label='initial fit') axes[0].plot(x, result.best_fit, '-', label='best fit') axes[0].legend() comps = result.eval_components() axes[1].plot(x, y, 'o') axes[1].plot(x, comps['gaussian'], '--', label='Gaussian component') axes[1].plot(x, comps['line'], '--', label='Line component') axes[1].legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1299: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = result.eval_components() plt.plot(x, y, 'o') plt.plot(x, comps['gaussian'], '--', label='Gaussian component') plt.plot(x, comps['line'], '--', label='Line component') [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1321: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: xwide = linspace(-5, 25, 3001) predicted = mod.eval(result.params, x=xwide) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1338: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: def fcn1(x, a): pass def fcn2(x, b): pass def fcn3(x, c): pass [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1350: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(fcn1) + Model(fcn2) * Model(fcn3) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1364: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np def convolve(dat, kernel): """simple convolution of two arrays""" npts = min(len(dat), len(kernel)) pad = np.ones(npts) tmp = np.concatenate((pad*dat[0], dat, pad*dat[-1])) out = np.convolve(tmp, kernel, mode='valid') noff = int((len(out) - npts) / 2) return (out[noff:])[:npts] [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1382: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_composite.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1387: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst:1394: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'o') axes[0].plot(x, result.init_fit, '--', label='initial fit') axes[0].plot(x, result.best_fit, '-', label='best fit') axes[0].legend() axes[1].plot(x, y, 'o') axes[1].plot(x, 10*comps['jump'], '--', label='Jump component') axes[1].plot(x, 10*comps['gaussian'], '-', label='Gaussian component') axes[1].legend() plt.show() [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/parameters.rst:117: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_parameters_basic.py :hide-output: [docutils] /build/reproducible-path/lmfit-py-1.3.3/doc/parameters.rst:125: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def fcn2min(params, x, data): """Model a decaying sine wave and subtract data.""" v = params.valuesdict() model = v['amp'] * np.sin(x*v['omega'] + v['shift']) * np.exp(-x*x*v['decay']) return model - data [docutils] looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/lmfit-py-1.3.3/doc/bounds.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- bounds /build/reproducible-path/lmfit-py-1.3.3/doc/builtin_models.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- builtin_models /build/reproducible-path/lmfit-py-1.3.3/doc/confidence.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- confidence /build/reproducible-path/lmfit-py-1.3.3/doc/constraints.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- constraints /build/reproducible-path/lmfit-py-1.3.3/doc/examples/index.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- examples/index /build/reproducible-path/lmfit-py-1.3.3/doc/faq.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- faq /build/reproducible-path/lmfit-py-1.3.3/doc/fitting.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- fitting /build/reproducible-path/lmfit-py-1.3.3/doc/installation.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- installation /build/reproducible-path/lmfit-py-1.3.3/doc/intro.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- intro /build/reproducible-path/lmfit-py-1.3.3/doc/model.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- model /build/reproducible-path/lmfit-py-1.3.3/doc/parameters.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- parameters /build/reproducible-path/lmfit-py-1.3.3/doc/support.rst: document is referenced in multiple toctrees: ['contents', 'index'], selecting: index <- support 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The HTML pages are in .pybuild/html. rm doc/extensions.py mv examples/nodoc_example_emcee_Model_interface.py examples/example_emcee_Model_interface.py dh_installdocs -i install -m0755 -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -p -m0644 debian/copyright debian/python3-lmfit/usr/share/doc/python3-lmfit/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc-base/ install -p -m0644 debian/python-lmfit-doc.doc-base debian/python-lmfit-doc/usr/share/doc-base/python-lmfit-doc.python-lmfit-doc dh_installdocs .pybuild/html -p python-lmfit-doc --doc-main-package=python3-lmfit install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python3-lmfit cd '.pybuild/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/lmfit-py-1.3.3/debian/python-lmfit-doc/usr/share/doc/python3-lmfit chmod -R u\+rw,go=rX debian/python-lmfit-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc-base/ install -p -m0644 debian/python-lmfit-doc.doc-base debian/python-lmfit-doc/usr/share/doc-base/python-lmfit-doc.python-lmfit-doc make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.3' dh_sphinxdoc -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js rm -rf debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.doctrees rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.buildinfo mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -p -m0644 debian/.debhelper/generated/python3-lmfit/dh_installchangelogs.dch.trimmed debian/python3-lmfit/usr/share/doc/python3-lmfit/changelog.Debian install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -p -m0644 debian/.debhelper/generated/python-lmfit-doc/dh_installchangelogs.dch.trimmed debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/changelog.Debian rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.3' rm -rf debian/python3-lmfit/usr/lib/python3*/dist-packages/htmlcov debian/python3-lmfit/usr/lib/python3*/dist-packages/.coverage make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.3' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250308 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-lmfit-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=lmfit-py, binary packages=['python3-lmfit'] D: dh_python3 dh_python3:205: processing package python3-lmfit... D: dh_python3 fs:50: moving files from debian/python3-lmfit/usr/lib/python3.13/dist-packages to debian/python3-lmfit/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:254: removing dist-packages/.coverage.codethink03-arm64.2177728.XIheeDFx D: dh_python3 fs:179: Writing INSTALLER in debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.3.3.dist-info D: dh_python3 fs:190: Deleting RECORD in debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.3.3.dist-info D: dh_python3 fs:338: package python3-lmfit details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.3.3.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-lmfit D: dh_python3 pydist:175: trying to find dependency for asteval>=1.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for numpy>=1.24 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for scipy>=1.10.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for uncertainties>=3.2.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for dill>=0.3.4 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pycairo; platform_system == "Windows" and extra == "doc" (python=None) I: dh_python3 pydist:339: Ignoring complex environment marker: pycairo; platform_system == "Windows" and extra == "doc" D: dh_python3 depends:253: D={'python3-dill', 'python3:any', 'python3-uncertainties (>= 3.2.2~)', 'python3-numpy (>= 1.19~)', 'python3-scipy (>= 1.6~)', 'python3-asteval (>= 1.0~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1743180354 as canonical time Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/relbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/no_image.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/lmfitheader.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/listitem.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/headerbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/footerbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/broken_example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/bodybg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_lmfit_emcee_model_selection_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_uncertainties_y_and_x_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_uncertainties_y_and_x_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_uncertainties_y_and_x_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_jacobian_benchmark_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_jacobian_benchmark_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_jacobian_benchmark_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_Model-interface_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_Model-interface_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_Model-interface_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_basinhopping_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_basinhopping_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_basinhopping_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001_3_00x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fe2af31b7b0cbda8b83cc55e6a993962/example_fit_multi_datasets.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/906b26cb632f958951ad30391cca03c2/example_fit_multi_datasets_Model-interface.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/8bc8bf935cb55b846fb887ae67119e73/example_fit_with_bounds.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/83c1efe92ae9450e505c8e1a6f140c89/example_diffev.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/71e355b3b30ce74828ca4cf53539dee9/example_confidence_interval.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/699f40a9aaadc3e2940695c56ce1a766/example_complex_resonator_model.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/60ed202e1a46df18e620e4db6b68bc5b/example_uncertainties_y_and_x.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/570649c46ce3ba7d3aa57423dbdf4bfc/example_detect_outliers.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/4b0b2bd3ab5ac85a687b73fdf77c10e8/example_fit_with_algebraic_constraint.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/43307aed08caee4fd5f81b541b305e07/example_fit_with_derivfunc.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/1e1423cf629493dec61889ad589cc4ee/example_sympy.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/00134ee71b9a3140093a2c880ffc05b2/example_two_dimensional_peak.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/f81f821349f6ac014b70d7d599914cf0/example_expression_model.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/dbec5987901e14219cbb0374bcb09f84/example_Model_interface.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/d91d8231a4fc8b35dce7ae4cca7141a1/example_use_pandas.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/cb0c48698554996e8733a1803c042898/lmfit_emcee_model_selection.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/a77b5add2eaa4ab07fa4f0e915c3066a/example_basinhopping.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/9a2c85e37f5bf773d8457e3313adec9d/example_fit_jacobian_benchmark.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/9896395df97ee7377a6f37d810ed61b7/example_fit_with_inequality.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/9525432cdc678720dba934ae8fde54b3/example_brute.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/94d199f783ca5474abd6b2528828a3da/example_reduce_fcn.zip using File::StripNondeterminism::handlers::zip dh_compress -O--buildsystem=pybuild cd debian/python3-lmfit cd debian/python-lmfit-doc chmod a-x usr/share/doc/python3-lmfit/changelog.Debian gzip -9nf usr/share/doc/python3-lmfit/changelog.Debian cd '/build/reproducible-path/lmfit-py-1.3.3' chmod a-x usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/42b143772ac94b1e24f82c78c37f8727/example_fit_jacobian_benchmark.py usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/6bd1774e2b7de7f7c5a9bb78e91a173a/example_fit_multi_datasets_Model-interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/9db45352ed3b7a40b0471b4137f67079/example_fit_jacobian_benchmark.ipynb usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb gzip -9nf usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/42b143772ac94b1e24f82c78c37f8727/example_fit_jacobian_benchmark.py usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/6bd1774e2b7de7f7c5a9bb78e91a173a/example_fit_multi_datasets_Model-interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/9db45352ed3b7a40b0471b4137f67079/example_fit_jacobian_benchmark.ipynb usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb cd '/build/reproducible-path/lmfit-py-1.3.3' dh_fixperms -O--buildsystem=pybuild find debian/python3-lmfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-lmfit-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-lmfit-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-lmfit-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-lmfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-lmfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-lmfit-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/postinst cat debian/python3-lmfit.postinst.debhelper >> debian/python3-lmfit/DEBIAN/postinst chmod 0755 -- debian/python3-lmfit/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/prerm cat debian/python3-lmfit.prerm.debhelper >> debian/python3-lmfit/DEBIAN/prerm chmod 0755 -- debian/python3-lmfit/DEBIAN/prerm install -m0755 -d debian/python-lmfit-doc/DEBIAN dh_numpy3 -O--buildsystem=pybuild Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/DEBIAN echo misc:Depends= >> debian/python3-lmfit.substvars echo misc:Pre-Depends= >> debian/python3-lmfit.substvars dpkg-gencontrol -ppython3-lmfit -ldebian/changelog -Tdebian/python3-lmfit.substvars -cdebian/control -Pdebian/python3-lmfit install -m0755 -d debian/python-lmfit-doc/DEBIAN echo misc:Depends= >> debian/python-lmfit-doc.substvars echo misc:Pre-Depends= >> debian/python-lmfit-doc.substvars dpkg-gencontrol -ppython-lmfit-doc -ldebian/changelog -Tdebian/python-lmfit-doc.substvars -cdebian/control -Pdebian/python-lmfit-doc chmod 0644 -- debian/python3-lmfit/DEBIAN/control chmod 0644 -- debian/python-lmfit-doc/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python-lmfit-doc/DEBIAN install -m0755 -d debian/python3-lmfit/DEBIAN cd debian/python-lmfit-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-lmfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-lmfit/DEBIAN/md5sums chmod 0644 -- debian/python-lmfit-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python-lmfit-doc .. dpkg-deb --root-owner-group --build debian/python3-lmfit .. dpkg-deb: building package 'python3-lmfit' in '../python3-lmfit_1.3.3-1_all.deb'. dpkg-deb: building package 'python-lmfit-doc' in '../python-lmfit-doc_1.3.3-1_all.deb'. dpkg-genbuildinfo --build=binary -O../lmfit-py_1.3.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../lmfit-py_1.3.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2112413 and its subdirectories I: Current time: Fri May 1 01:34:15 -12 2026 I: pbuilder-time-stamp: 1777642455 Sat Mar 29 07:11:18 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Mar 29 07:11:18 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Mar 29 07:16:02 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Mar 29 07:16:03 UTC 2025 I: lmfit-py_1.3.3-1_arm64.changes: Format: 1.8 Date: Fri, 28 Mar 2025 17:45:54 +0100 Source: lmfit-py Binary: python-lmfit-doc python3-lmfit Architecture: all Version: 1.3.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Roland Mas Description: python-lmfit-doc - Least-Squares Minimization with Constraints (Documentation) python3-lmfit - Least-Squares Minimization with Constraints (Python 3) Changes: lmfit-py (1.3.3-1) unstable; urgency=medium . * Team upload. * New upstream release. Checksums-Sha1: ce10e358288f073adb1f9db8952ac9d5cee63558 11413 lmfit-py_1.3.3-1_arm64.buildinfo 3679a9bf68359caf85c89007cace74da6e1c4613 6379724 python-lmfit-doc_1.3.3-1_all.deb 5596ef9972093ee5bf061603ebf182aea786d7cd 82296 python3-lmfit_1.3.3-1_all.deb Checksums-Sha256: d7454189837c0440fa8f4b1efa1e51a9926669c2323cb838105b6b77308206a8 11413 lmfit-py_1.3.3-1_arm64.buildinfo a7fd36166be17c85fdacf2b71c592f70edb3612894c647ca33d83fdc1c6c71a5 6379724 python-lmfit-doc_1.3.3-1_all.deb c9e665ff9dae7fa6ec57d336b048fa732e969f3c782f75593013a2a6d208d36f 82296 python3-lmfit_1.3.3-1_all.deb Files: ef4b57486c7d16dcf951e307f74153fd 11413 science optional lmfit-py_1.3.3-1_arm64.buildinfo 7c09d1a71d4ecdf21a0197e5ffb32f3c 6379724 doc optional python-lmfit-doc_1.3.3-1_all.deb ff3152741293e9cc00373343ffa4e68f 82296 python optional python3-lmfit_1.3.3-1_all.deb Sat Mar 29 07:16:04 UTC 2025 I: diffoscope 291 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_6-86225.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0EolXhxo/lmfit-py_1.3.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0EolXhxo/lmfit-py_1.3.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0EolXhxo/lmfit-py_1.3.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0EolXhxo/b1/lmfit-py_1.3.3-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.0EolXhxo/b2/lmfit-py_1.3.3-1_arm64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 1.830s) 0.890s 66 calls diff 0.624s 6 calls xz 0.159s 11 calls js-beautify 0.125s 220 calls html2text 0.014s 3 calls cmp 0.014s 3 calls cmp (external) 0.003s 53 calls cmp (internal) ## compare_files (cumulative) (total time: 22.331s) 4.922s 1 call abc.DotChangesFile 4.887s 1 call abc.DebFile 4.829s 2 calls abc.XzFile 4.149s 1 call abc.DebDataTarFile 2.348s 1 call abc.JavaScriptFile 0.748s 20 calls abc.HtmlFile 0.401s 20 calls abc.TextFile 0.036s 1 call abc.TarFile 0.011s 1 call abc.Md5sumsFile ## container_extract (total time: 0.767s) 0.624s 6 calls diffoscope.comparators.xz.XzContainer 0.115s 504 calls diffoscope.comparators.deb.DebTarContainer 0.025s 8 calls diffoscope.comparators.deb.DebContainer 0.002s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.009s) 0.009s 83 calls linediff ## has_same_content_as (total time: 0.021s) 0.011s 1 call abc.DebDataTarFile 0.004s 20 calls abc.HtmlFile 0.002s 22 calls abc.TextFile 0.002s 2 calls abc.DebFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.JavaScriptFile ## main (total time: 6.131s) 6.101s 2 calls outputs 0.030s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.808s) 0.804s 1 call html 0.002s 1 call text 0.002s 1 call json ## recognizes (total time: 0.402s) 0.289s 2412 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.069s 12 calls diffoscope.comparators.binary.FilesystemFile 0.023s 108 calls diffoscope.comparators.debian.DebControlMember 0.021s 260 calls diffoscope.comparators.utils.archive.ArchiveMember ## specialize (total time: 0.708s) 0.708s 56 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 6.457s CPU time consumed: 7.118s Sat Mar 29 07:16:11 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Mar 29 07:16:11 UTC 2025 E: lmfit-py failed to build reproducibly in unstable on arm64. Sat Mar 29 07:16:12 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Mar 29 07:16:12 UTC 2025 I: Submitting 16K b1/lmfit-py_1.3.3-1_arm64.buildinfo.asc Sat Mar 29 07:16:19 UTC 2025 I: Submitting 16K b2/lmfit-py_1.3.3-1_arm64.buildinfo.asc Sat Mar 29 07:16:25 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Mar 29 07:16:25 UTC 2025 I: Done submitting .buildinfo files. Sat Mar 29 07:16:25 UTC 2025 I: Removing signed lmfit-py_1.3.3-1_arm64.buildinfo.asc files: removed './b1/lmfit-py_1.3.3-1_arm64.buildinfo.asc' removed './b2/lmfit-py_1.3.3-1_arm64.buildinfo.asc'