Thu Feb 13 23:27:18 UTC 2025 I: starting to build muscle3/unstable/arm64 on jenkins on '2025-02-13 23:27' Thu Feb 13 23:27:18 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/77477/console.log Thu Feb 13 23:27:18 UTC 2025 I: Downloading source for unstable/muscle3=3.8.1551-3 --2025-02-13 23:27:18-- http://deb.debian.org/debian/pool/main/m/muscle3/muscle3_3.8.1551-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2162 (2.1K) [text/prs.lines.tag] Saving to: ‘muscle3_3.8.1551-3.dsc’ 0K .. 100% 394M=0s 2025-02-13 23:27:18 (394 MB/s) - ‘muscle3_3.8.1551-3.dsc’ saved [2162/2162] Thu Feb 13 23:27:18 UTC 2025 I: muscle3_3.8.1551-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: muscle3 Binary: muscle3 Architecture: any Version: 3.8.1551-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: https://www.drive5.com/muscle/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/muscle3 Vcs-Git: https://salsa.debian.org/med-team/muscle3.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: muscle3 deb science optional arch=any Checksums-Sha1: 9d9d56e5f064686491a3ef348cd565b1fc1ff3d3 190019 muscle3_3.8.1551.orig.tar.gz 7332727b3f578e3eb38fa9f85483be291b671d90 22592 muscle3_3.8.1551-3.debian.tar.xz Checksums-Sha256: c70c552231cd3289f1bad51c9bd174804c18bb3adcf47f501afec7a68f9c482e 190019 muscle3_3.8.1551.orig.tar.gz c96423b7d6b21ef0a12a39a16348d6a47c07cb434aac7ab9148daca934bd37a7 22592 muscle3_3.8.1551-3.debian.tar.xz Files: 1b7c9661f275a82d3cf708f923736bf8 190019 muscle3_3.8.1551.orig.tar.gz bc3277acd1766f2e2ad1e7d53ddad4a5 22592 muscle3_3.8.1551-3.debian.tar.xz Dgit: 1aad73295d27d0893020aad928efa2732b7fe6bf debian archive/debian/3.8.1551-3 https://git.dgit.debian.org/muscle3 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV/AP4UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr0Cw/+PF2G3bxVnyoh7Mvj3Da1zANOGXgt uckJ0yRNtHWjA3uUHp6Vi/EEkm6k+UBp05VGrUlNCRqyJ2XmOYeC9HOCDN4ybaIe eaHAWE9GUfOcxE66hn1O+ifoS/GzVYmvMjlXUuQRYKX2AXQpSlda1bdzzyPGJUUb mJfDK5Wkp59qxwyqFCQ52Lu3DPJo2oUcGIN6aELU9vV3A/kGYZl9BSx996HYZEYL PECvkNG1ihFWGAC3omvfvYZVYdg8yE34f5I9Y2tL50HKDcCmK+aV2dCJqJWO8nbi XY4AuOdrrchJE67phDwp7eE/6zHjAdVXDwJV9+TShzMjSoqCpNra2Saco2QkCAs3 uWK0UukAb+jlFevxqsClMqVRRnPCY1W1eBCABMz2NMtVC7HebvDVHumz72omXdep HBfUBXxvVkTUycwfD/z98G1imvtNWEN4UcOsHh9uUlwCnyoYzDQpR0zK0ggh3rMv yzEN0mA3O6xLUCVbT4Rqzvk7iOThraClDe7Jg7RA9V2C1zTV5ZaeHT3gcv9Ux+N/ uzhJJSuikny+P6C14mGhw3aKiYRnwIDPZG4a380XiVkAphLXqVpHOf41E25LCyMR GCXsUjdJq4Zdf+wfdUNnGxjTP5qUbp3V+TFjQ2yfiJXQRUnLH1Gmrv/omZ48BbBq 5zuDomrNujQm+l0= =Mc5i -----END PGP SIGNATURE----- Thu Feb 13 23:27:18 UTC 2025 I: Checking whether the package is not for us Thu Feb 13 23:27:18 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Feb 13 23:27:18 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Feb 13 23:28:03 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Mar 18 17:50:20 -12 2026 I: pbuilder-time-stamp: 1773899420 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [muscle3_3.8.1551-3.dsc] I: copying [./muscle3_3.8.1551.orig.tar.gz] I: copying [./muscle3_3.8.1551-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./muscle3_3.8.1551-3.dsc: unsupported subcommand dpkg-source: info: extracting muscle3 in muscle3-3.8.1551 dpkg-source: info: unpacking muscle3_3.8.1551.orig.tar.gz dpkg-source: info: unpacking muscle3_3.8.1551-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Fix_FTBFS_Hurd.patch dpkg-source: info: applying makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1957226/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='1e1ae9ed4cbb462f9df399ecc06813a1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1957226' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hsZXNPsW/pbuilderrc_lqV6 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hsZXNPsW/b1 --logfile b1/build.log muscle3_3.8.1551-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1957226/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19922 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After unpacking 80.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Fetched 20.1 MB in 0s (93.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19922 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-3_arm64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/muscle3-3.8.1551/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../muscle3_3.8.1551-3_source.changes dpkg-buildpackage: info: source package muscle3 dpkg-buildpackage: info: source version 3.8.1551-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/muscle3-3.8.1551' dh_auto_build -- 'GPP=$(CXX)' make -j12 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/muscle3-3.8.1551' g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 aligngivenpath.cpp -o aligngivenpath.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 aligngivenpathsw.cpp -o aligngivenpathsw.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 aligntwomsas.cpp -o aligntwomsas.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 aligntwoprofs.cpp -o aligntwoprofs.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 aln.cpp -o aln.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 alpha.cpp -o alpha.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 anchors.cpp -o anchors.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 bittraceback.cpp -o bittraceback.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 blosum62.cpp -o blosum62.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 blosumla.cpp -o blosumla.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 clust.cpp -o clust.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 cluster.cpp -o cluster.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 clwwt.cpp -o clwwt.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 color.cpp -o color.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 cons.cpp -o cons.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 diaglist.cpp -o diaglist.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 diffobjscore.cpp -o diffobjscore.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 diffpaths.cpp -o diffpaths.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 difftrees.cpp -o difftrees.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 difftreese.cpp -o difftreese.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 distcalc.cpp -o distcalc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 distfunc.cpp -o distfunc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 distpwkimura.cpp -o distpwkimura.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 domuscle.cpp -o domuscle.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 dosp.cpp -o dosp.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 dpreglist.cpp -o dpreglist.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 drawtree.cpp -o drawtree.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 edgelist.cpp -o edgelist.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 enumopts.cpp -o enumopts.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 enumtostr.cpp -o enumtostr.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 estring.cpp -o estring.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fasta.cpp -o fasta.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fasta2.cpp -o fasta2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fastclust.cpp -o fastclust.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fastdist.cpp -o fastdist.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistjones.cpp -o fastdistjones.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistkbit.cpp -o fastdistkbit.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistkmer.cpp -o fastdistkmer.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistmafft.cpp -o fastdistmafft.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistnuc.cpp -o fastdistnuc.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 fastscorepath2.cpp -o fastscorepath2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 finddiags.cpp -o finddiags.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 finddiagsn.cpp -o finddiagsn.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbalign.cpp -o glbalign.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbalign352.cpp -o glbalign352.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbaligndiag.cpp -o glbaligndiag.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignle.cpp -o glbalignle.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignsimple.cpp -o glbalignsimple.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignsp.cpp -o glbalignsp.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignspn.cpp -o glbalignspn.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignss.cpp -o glbalignss.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 glbalndimer.cpp -o glbalndimer.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 globals.cpp -o globals.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 globalslinux.cpp -o globalslinux.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 globalsosx.cpp -o globalsosx.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 globalsother.cpp -o globalsother.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 globalswin32.cpp -o globalswin32.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 gonnet.cpp -o gonnet.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 henikoffweight.cpp -o henikoffweight.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 henikoffweightpb.cpp -o henikoffweightpb.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 html.cpp -o html.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 hydro.cpp -o hydro.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 intmath.cpp -o intmath.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 local.cpp -o local.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 main.cpp -o main.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 makerootmsa.cpp -o makerootmsa.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 makerootmsab.cpp -o makerootmsab.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 maketree.cpp -o maketree.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 mhack.cpp -o mhack.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 mpam200.cpp -o mpam200.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 msa.cpp -o msa.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 msa2.cpp -o msa2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 msadistkimura.cpp -o msadistkimura.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 msf.cpp -o msf.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 muscle.cpp -o muscle.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 muscleout.cpp -o muscleout.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 nucmx.cpp -o nucmx.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 nwdasimple.cpp -o nwdasimple.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 nwdasimple2.cpp -o nwdasimple2.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 nwdasmall.cpp -o nwdasmall.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 nwrec.cpp -o nwrec.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 nwsmall.cpp -o nwsmall.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 objscore.cpp -o objscore.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 objscore2.cpp -o objscore2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 objscoreda.cpp -o objscoreda.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 onexception.cpp -o onexception.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 options.cpp -o options.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 outweights.cpp -o outweights.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 pam200mafft.cpp -o pam200mafft.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 params.cpp -o params.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 phy.cpp -o phy.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 phy2.cpp -o phy2.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 phy3.cpp -o phy3.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 phy4.cpp -o phy4.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 phyfromclust.cpp -o phyfromclust.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 phyfromfile.cpp -o phyfromfile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 physeq.cpp -o physeq.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 phytofile.cpp -o phytofile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 posgap.cpp -o posgap.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 ppscore.cpp -o ppscore.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 profdb.cpp -o profdb.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 profile.cpp -o profile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 profilefrommsa.cpp -o profilefrommsa.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 progalign.cpp -o progalign.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 progress.cpp -o progress.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 progressivealign.cpp -o progressivealign.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 pwpath.cpp -o pwpath.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 readmx.cpp -o readmx.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 realigndiffs.cpp -o realigndiffs.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 realigndiffse.cpp -o realigndiffse.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 refine.cpp -o refine.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 refinehoriz.cpp -o refinehoriz.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 refinesubfams.cpp -o refinesubfams.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 refinetree.cpp -o refinetree.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 refinetreee.cpp -o refinetreee.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 refinevert.cpp -o refinevert.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 refinew.cpp -o refinew.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 savebest.cpp -o savebest.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 scoredist.cpp -o scoredist.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 scoregaps.cpp -o scoregaps.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 scorehistory.cpp -o scorehistory.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 scorepp.cpp -o scorepp.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 seq.cpp -o seq.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 seqvect.cpp -o seqvect.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 setblosumweights.cpp -o setblosumweights.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 setgscweights.cpp -o setgscweights.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 setnewhandler.cpp -o setnewhandler.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 spfast.cpp -o spfast.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 sptest.cpp -o sptest.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 stabilize.cpp -o stabilize.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 subfam.cpp -o subfam.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 subfams.cpp -o subfams.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 sw.cpp -o sw.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 termgaps.cpp -o termgaps.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 textfile.cpp -o textfile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 threewaywt.cpp -o threewaywt.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 tomhydro.cpp -o tomhydro.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 traceback.cpp -o traceback.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 tracebackopt.cpp -o tracebackopt.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 tracebacksw.cpp -o tracebacksw.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 treefrommsa.cpp -o treefrommsa.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 typetostr.cpp -o typetostr.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 upgma2.cpp -o upgma2.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 usage.cpp -o usage.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 validateids.cpp -o validateids.o typetostr.cpp: In function 'const char* SecsToStr(long unsigned int)': typetostr.cpp:13:28: warning: ':' directive writing 1 byte into a region of size between 0 and 14 [-Wformat-overflow=] 13 | sprintf(Str, "%02ld:%02ld:%02ld", hh, mm, ss); | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ typetostr.cpp:13:22: note: directive argument in the range [0, 59] 13 | sprintf(Str, "%02ld:%02ld:%02ld", hh, mm, ss); | ^~~~~~~~~~~~~~~~~~~ typetostr.cpp:13:22: note: directive argument in the range [0, 59] typetostr.cpp:13:16: note: 'sprintf' output between 9 and 23 bytes into a destination of size 16 13 | sprintf(Str, "%02ld:%02ld:%02ld", hh, mm, ss); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 vtml2.cpp -o vtml2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 writescorefile.cpp -o writescorefile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -funroll-loops -Winline -DNDEBUG=1 -o muscle aligngivenpath.o aligngivenpathsw.o aligntwomsas.o aligntwoprofs.o aln.o alpha.o anchors.o bittraceback.o blosum62.o blosumla.o clust.o cluster.o clwwt.o color.o cons.o diaglist.o diffobjscore.o diffpaths.o difftrees.o difftreese.o distcalc.o distfunc.o distpwkimura.o domuscle.o dosp.o dpreglist.o drawtree.o edgelist.o enumopts.o enumtostr.o estring.o fasta.o fasta2.o fastclust.o fastdist.o fastdistjones.o fastdistkbit.o fastdistkmer.o fastdistmafft.o fastdistnuc.o fastscorepath2.o finddiags.o finddiagsn.o glbalign.o glbalign352.o glbaligndiag.o glbalignle.o glbalignsimple.o glbalignsp.o glbalignspn.o glbalignss.o glbalndimer.o globals.o globalslinux.o globalsosx.o globalsother.o globalswin32.o gonnet.o henikoffweight.o henikoffweightpb.o html.o hydro.o intmath.o local.o main.o makerootmsa.o makerootmsab.o maketree.o mhack.o mpam200.o msa.o msa2.o msadistkimura.o msf.o muscle.o muscleout.o nucmx.o nwdasimple.o nwdasimple2.o nwdasmall.o nwrec.o nwsmall.o objscore.o objscore2.o objscoreda.o onexception.o options.o outweights.o pam200mafft.o params.o phy.o phy2.o phy3.o phy4.o phyfromclust.o phyfromfile.o physeq.o phytofile.o posgap.o ppscore.o profdb.o profile.o profilefrommsa.o progalign.o progress.o progressivealign.o pwpath.o readmx.o realigndiffs.o realigndiffse.o refine.o refinehoriz.o refinesubfams.o refinetree.o refinetreee.o refinevert.o refinew.o savebest.o scoredist.o scoregaps.o scorehistory.o scorepp.o seq.o seqvect.o setblosumweights.o setgscweights.o setnewhandler.o spfast.o sptest.o stabilize.o subfam.o subfams.o sw.o termgaps.o textfile.o threewaywt.o tomhydro.o traceback.o tracebackopt.o tracebacksw.o treefrommsa.o typetostr.o upgma2.o usage.o validateids.o vtml2.o writescorefile.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/muscle3-3.8.1551' make[1]: Leaving directory '/build/reproducible-path/muscle3-3.8.1551' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/muscle3/ debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/muscle3-3.8.1551' dh_install mv debian/muscle3/usr/bin/muscle debian/muscle3/usr/bin/muscle3 make[1]: Leaving directory '/build/reproducible-path/muscle3-3.8.1551' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'muscle3-dbgsym' in '../muscle3-dbgsym_3.8.1551-3_arm64.deb'. dpkg-deb: building package 'muscle3' in '../muscle3_3.8.1551-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../muscle3_3.8.1551-3_arm64.buildinfo dpkg-genchanges --build=binary -O../muscle3_3.8.1551-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1957226 and its subdirectories I: Current time: Wed Mar 18 17:51:02 -12 2026 I: pbuilder-time-stamp: 1773899462 Thu Feb 13 23:28:04 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Thu Feb 13 23:28:04 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Thu Feb 13 23:28:56 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Thu Feb 13 23:28:57 UTC 2025 I: muscle3_3.8.1551-3_arm64.changes: Format: 1.8 Date: Sun, 17 Dec 2023 15:04:37 +0100 Source: muscle3 Binary: muscle3 muscle3-dbgsym Architecture: arm64 Version: 3.8.1551-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: muscle3 - multiple alignment program of protein sequences Closes: 1048044 Changes: muscle3 (3.8.1551-3) unstable; urgency=medium . * Team upload. * makefile.patch: mark forwarding not-needed. * 01_Fix_FTBFS_Hurd.patch: mark forwarding missing. * d/control: declare compliance to standards version 4.6.2. * d/s/lintian-overrides: remove now unused override. * d/clean: new: cleanup build artifacts. (Closes: #1048044) Checksums-Sha1: 7d466feb814f6c30ea119431d0d2a75c9241dd99 808956 muscle3-dbgsym_3.8.1551-3_arm64.deb a91fb313a09990a3b38874d9d162a3e1d8463994 4863 muscle3_3.8.1551-3_arm64.buildinfo 8da7e972a206d229b957591fb2e49434ecd71749 229920 muscle3_3.8.1551-3_arm64.deb Checksums-Sha256: 61f91bfa7118491e7d2cea0ef26654bd927c9e6de33c36ac2f0859024f3701d4 808956 muscle3-dbgsym_3.8.1551-3_arm64.deb fd0da0130b175fb1fe1f5657acf5f18a2ca68758bfb0f72b9e4991b40b437e02 4863 muscle3_3.8.1551-3_arm64.buildinfo ee5917d3dfcc9fcf67f99235c7900516c9d990bdb02d50cfd48b2f5ed1eee1c5 229920 muscle3_3.8.1551-3_arm64.deb Files: d95e692b73ee0e5fef0a271697184955 808956 debug optional muscle3-dbgsym_3.8.1551-3_arm64.deb 4b380cb9a31d4af50b17a6907cf8629a 4863 science optional muscle3_3.8.1551-3_arm64.buildinfo fb1f0ce5f985b37a81cfd854f65916fa 229920 science optional muscle3_3.8.1551-3_arm64.deb Thu Feb 13 23:28:58 UTC 2025 I: diffoscope 288 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_3-77477.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.hsZXNPsW/muscle3_3.8.1551-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.hsZXNPsW/muscle3_3.8.1551-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.hsZXNPsW/muscle3_3.8.1551-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.hsZXNPsW/b1/muscle3_3.8.1551-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.hsZXNPsW/b2/muscle3_3.8.1551-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 219ms CPU time consumed: 220ms Thu Feb 13 23:28:58 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Thu Feb 13 23:28:58 UTC 2025 I: muscle3 from unstable built successfully and reproducibly on arm64. Thu Feb 13 23:28:59 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Feb 13 23:28:59 UTC 2025 I: Submitting 8.0K b1/muscle3_3.8.1551-3_arm64.buildinfo.asc Thu Feb 13 23:29:00 UTC 2025 I: Submitting 8.0K b2/muscle3_3.8.1551-3_arm64.buildinfo.asc Thu Feb 13 23:29:01 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Feb 13 23:29:01 UTC 2025 I: Done submitting .buildinfo files. Thu Feb 13 23:29:01 UTC 2025 I: Removing signed muscle3_3.8.1551-3_arm64.buildinfo.asc files: removed './b1/muscle3_3.8.1551-3_arm64.buildinfo.asc' removed './b2/muscle3_3.8.1551-3_arm64.buildinfo.asc'