Thu Mar 13 02:48:55 UTC 2025 I: starting to build pbcopper/unstable/arm64 on jenkins on '2025-03-13 02:48'
Thu Mar 13 02:48:55 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/61499/console.log
Thu Mar 13 02:48:55 UTC 2025 I: Downloading source for unstable/pbcopper=2.3.0+dfsg-2
--2025-03-13 02:48:56-- http://deb.debian.org/debian/pool/main/p/pbcopper/pbcopper_2.3.0%2bdfsg-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2379 (2.3K) [text/prs.lines.tag]
Saving to: ‘pbcopper_2.3.0+dfsg-2.dsc’
0K .. 100% 358M=0s
2025-03-13 02:48:56 (358 MB/s) - ‘pbcopper_2.3.0+dfsg-2.dsc’ saved [2379/2379]
Thu Mar 13 02:48:56 UTC 2025 I: pbcopper_2.3.0+dfsg-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pbcopper
Binary: libpbcopper2.3.0, libpbcopper-dev
Architecture: any-amd64 arm64 loong64 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 alpha
Version: 2.3.0+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/PacificBiosciences/pbcopper
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/pbcopper
Vcs-Git: https://salsa.debian.org/med-team/pbcopper.git
Build-Depends: debhelper-compat (= 13), d-shlibs, meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev, libsimde-dev
Package-List:
libpbcopper-dev deb libdevel optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha
libpbcopper2.3.0 deb libs optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha
Checksums-Sha1:
7f03fb0c39532e685be6893190fbd1556a45eb0b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz
a04cccf7a845e38a7f199658bee72497e2bcf2af 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz
Checksums-Sha256:
778862e58f051159b8b35bdae7d3361011a1cbc674423e6a23992b094f76f162 736204 pbcopper_2.3.0+dfsg.orig.tar.xz
249fa94ccac19d58f1261847b2e11aa8c4c167b45ed7283ac8c772d18860dc6e 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz
Files:
2dad359fad146c0886f57c921055a49b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz
accfafab8a2cb6ccd40e84c7c839a6bd 7728 pbcopper_2.3.0+dfsg-2.debian.tar.xz
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Thu Mar 13 02:48:56 UTC 2025 I: Checking whether the package is not for us
Thu Mar 13 02:48:56 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net.
Thu Mar 13 02:48:56 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Thu Mar 13 02:56:10 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Mar 12 14:48:59 -12 2025
I: pbuilder-time-stamp: 1741834139
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [pbcopper_2.3.0+dfsg-2.dsc]
I: copying [./pbcopper_2.3.0+dfsg.orig.tar.xz]
I: copying [./pbcopper_2.3.0+dfsg-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./pbcopper_2.3.0+dfsg-2.dsc: unsupported subcommand
dpkg-source: info: extracting pbcopper in pbcopper-2.3.0+dfsg
dpkg-source: info: unpacking pbcopper_2.3.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking pbcopper_2.3.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying simde.patch
dpkg-source: info: applying static+shared_lib.patch
dpkg-source: info: applying skip_test_Parallel_FireAndForget.patch
dpkg-source: info: applying gcc-13
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/75368/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='aecee97609734f3388ab51dc48453c02'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='75368'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CQJtVvon/pbuilderrc_DOI9 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CQJtVvon/b1 --logfile b1/build.log pbcopper_2.3.0+dfsg-2.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/75368/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), d-shlibs, meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev, libsimde-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19897 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs; however:
Package d-shlibs is not installed.
pbuilder-satisfydepends-dummy depends on meson; however:
Package meson is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on pkg-config; however:
Package pkg-config is not installed.
pbuilder-satisfydepends-dummy depends on libboost-dev; however:
Package libboost-dev is not installed.
pbuilder-satisfydepends-dummy depends on googletest; however:
Package googletest is not installed.
pbuilder-satisfydepends-dummy depends on libgtest-dev; however:
Package libgtest-dev is not installed.
pbuilder-satisfydepends-dummy depends on libsimde-dev; however:
Package libsimde-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget
0 packages upgraded, 95 newly installed, 0 to remove and 0 not upgraded.
Need to get 57.9 MB of archives. After unpacking 359 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.2-2 [27.1 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.2-2 [10.1 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.2-2 [28.1 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-7 [285 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.6-1 [2268 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b2 [630 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB]
Get: 37 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 39 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 41 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-1 [107 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 56 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.12.1-3 [339 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get: 58 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.6-1 [9912 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 d-shlibs all 0.109 [11.1 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB]
Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 68 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 69 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4.1+b1 [10.6 MB]
Get: 76 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B]
Get: 77 http://deb.debian.org/debian unstable/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get: 79 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-3 [467 kB]
Get: 80 http://deb.debian.org/debian unstable/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB]
Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B]
Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 88 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.8.0-1 [724 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 meson all 1.7.0-1 [639 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB]
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update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/pbcopper-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.3.0+dfsg-2_source.changes
dpkg-buildpackage: info: source package pbcopper
dpkg-buildpackage: info: source version 2.3.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --builddirectory=build
dh_auto_clean -O--builddirectory=build
dh_autoreconf_clean -O--builddirectory=build
dh_clean -O--builddirectory=build
debian/rules binary
dh binary --builddirectory=build
dh_update_autotools_config -O--builddirectory=build
dh_autoreconf -O--builddirectory=build
dh_auto_configure -O--builddirectory=build
cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1
The Meson build system
Version: 1.7.0
Source dir: /build/reproducible-path/pbcopper-2.3.0+dfsg
Build dir: /build/reproducible-path/pbcopper-2.3.0+dfsg/build
Build type: native build
../meson.build:2: WARNING: Keyword argument "default_options" defined multiple times.
WARNING: This will be an error in Meson 2.0.
Project name: pbcopper
Project version: 2.3.0
C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-18) 14.2.0")
C linker for the host machine: cc ld.bfd 2.44
C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-18) 14.2.0")
C++ linker for the host machine: c++ ld.bfd 2.44
Host machine cpu family: aarch64
Host machine cpu: aarch64
Compiler for C++ supports arguments -Wduplicated-cond: YES
Compiler for C++ supports arguments -Wduplicated-branches: YES
Compiler for C++ supports arguments -Wlogical-op: YES
Compiler for C++ supports arguments -Wrestrict: YES
Compiler for C++ supports arguments -Wdouble-promotion: YES
Compiler for C++ supports arguments -Wshadow: YES
Compiler for C++ supports arguments -Wformat=1: YES
Compiler for C supports arguments -Wc++-compat: YES
Compiler for C supports arguments -Wno-unused-parameter: YES
Compiler for C supports arguments -Wno-unused-variable: YES
Compiler for C supports arguments -Wno-sign-compare: YES
Compiler for C supports arguments -Wno-unused-but-set-variable: YES
Compiler for C supports arguments -march=armv8.2-a: YES
Run-time dependency threads found: YES
Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1
Run-time dependency Boost found: YES 1.83.0 (/usr/include)
Configuring PbcopperVersion.cpp using configuration
Configuring LibraryVersion.h using configuration
Program tools/check-formatting found: YES (/build/reproducible-path/pbcopper-2.3.0+dfsg/tools/check-formatting)
Run-time dependency GTest found: YES 1.15.0
Configuring PbcopperTestData.h using configuration
Build targets in project: 5
pbcopper 2.3.0
User defined options
buildtype : plain
libdir : lib/aarch64-linux-gnu
localstatedir : /var
prefix : /usr
python.bytecompile: -1
sysconfdir : /etc
wrap_mode : nodownload
Found ninja-1.12.1 at /usr/bin/ninja
dh_auto_build -O--builddirectory=build
cd build && LC_ALL=C.UTF-8 ninja -j12 -v
[1/182] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*'
[2/182] /usr/bin/meson --internal vcstagger ../src/LibraryGitHash.h.in src/LibraryGitHash.h 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*'
[3/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -MF src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o.d -o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -c src/utility/PbcopperGitHash.cpp
[4/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -MF tests/pbcopper_test.p/src_align_test_Seeds.cpp.o.d -o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -c ../tests/src/align/test_Seeds.cpp
[5/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -c ../tests/src/align/test_EdlibAlign.cpp
[6/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -c ../tests/src/align/test_BandedChainAlign.cpp
[7/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -MF src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o.d -o src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -c ../src/LibraryInfo.cpp
[8/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -c ../src/align/AlignConfig.cpp
[9/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -MF tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o.d -o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -c ../tests/src/align/test_GlobalLocalAlignment.cpp
[10/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o -MF tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o.d -o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o -c ../tests/src/container/test_BitConversion.cpp
[11/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o -c ../src/align/ChainSeedsConfig.cpp
[12/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o -MF tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o.d -o tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o -c ../tests/src/container/test_BitmaskContainer.cpp
[13/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o -c ../src/align/EdlibAlign.cpp
[14/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o -MF src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o.d -o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o -c ../src/algorithm/Heteroduplex.cpp
[15/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o -c ../src/align/GlobalLocalAlignment.cpp
[16/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o -c ../src/align/BandedChainAlignment.cpp
[17/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o -c ../tests/src/algorithm/test_Heteroduplex.cpp
[18/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o -MF src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o.d -o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o -c ../src/algorithm/KMerIndex.cpp
[19/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o -c ../src/align/FindSeeds.cpp
[20/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o -c ../src/align/Seed.cpp
[21/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o -c ../src/align/LocalAlignment.cpp
[22/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o -c ../src/align/AffineAlignment.cpp
[23/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o -c ../src/align/Seeds.cpp
[24/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -c ../tests/src/algorithm/test_LSHIndex.cpp
In file included from /usr/include/string.h:548,
from /usr/include/c++/14/cstring:43,
from ../include/pbcopper/third-party/robin_hood/robin_hood.h:43,
from ../include/pbcopper/container/RHUnordered.h:6,
from ../include/pbcopper/container/Unordered.h:6,
from ../include/pbcopper/algorithm/KMerIndex.h:6,
from ../tests/src/algorithm/test_LSHIndex.cpp:1:
In function ‘void* memcpy(void*, const void*, size_t)’,
inlined from ‘KeyT PacBio::Algorithm::LSHIndex<KeyT, IdT>::hashMemory(const T&, int64_t) const [with T = long unsigned int; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:630:24,
inlined from ‘KeyT PacBio::Algorithm::LSHIndex<KeyT, IdT>::hashIndex(const Sketch&, int64_t, int64_t) const [with Sketch = std::vector<long unsigned int, std::allocator<long unsigned int> >; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:678:30:
/usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)’ writing 8 or more bytes into a region of size 4 overflows the destination [-Wstringop-overflow=]
29 | return __builtin___memcpy_chk (__dest, __src, __len,
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
30 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
[25/182] cc -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -c ../src/align/cssw/ssw.c
[26/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o -c ../src/align/ChainSeeds.cpp
[27/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -c ../src/align/SparseAlignment.cpp
[28/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -c ../src/align/cssw/ssw_cpp.cpp
[29/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o -c ../src/align/LinearAlignment.cpp
[30/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -c ../tests/src/algorithm/test_KMerIndex.cpp
[31/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o -c ../src/cli2/Option.cpp
[32/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -c ../src/cli2/HelpMetrics.cpp
[33/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_align_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o -c ../tests/src/align/test_Alignment.cpp
[34/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o -c ../src/cli2/MultiToolInterfaceHelpPrinter.cpp
[35/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o -c ../src/cli2/Result.cpp
[36/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o -MF tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o.d -o tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o -c ../tests/src/container/test_BitContainer.cpp
[37/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o -c ../src/dagcon/Alignment.cpp
[38/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o -c ../src/cli2/OptionValue.cpp
[39/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o -c ../src/data/Accuracy.cpp
[40/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o -c ../src/cli2/VersionPrinter.cpp
[41/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o -c ../src/cli2/MultiToolInterface.cpp
[42/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o -c ../src/data/CigarOperation.cpp
[43/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o -c ../src/cli2/InterfaceHelpPrinter.cpp
[44/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o -c ../src/cli2/CLI.cpp
[45/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o -c ../src/cli2/CommandLineParser.cpp
[46/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o -c ../src/align/PairwiseAlignment.cpp
[47/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o -c ../src/cli2/Interface.cpp
[48/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o -c ../src/data/Clipping.cpp
[49/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o -c ../src/data/FrameEncoders.cpp
[50/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o -c ../src/cli2/Results.cpp
[51/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o -c ../src/data/Frames.cpp
[52/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o -c ../src/data/Cigar.cpp
[53/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o -c ../src/data/MovieName.cpp
[54/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o -c ../src/data/QualityValue.cpp
[55/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o -c ../src/data/SNR.cpp
[56/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o -c ../src/data/RSMovieName.cpp
[57/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o -c ../src/data/MappedRead.cpp
[58/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o -c ../src/data/GenomicInterval.cpp
[59/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o -c ../src/data/ReadId.cpp
[60/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o -c ../src/data/Strand.cpp
[61/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o -MF src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o.d -o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o -c ../src/math/FishersExact.cpp
[62/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Read.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Read.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o -c ../src/data/Read.cpp
[63/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o -c ../src/logging/LogConfig.cpp
[64/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o -c ../src/data/IntervalTree.cpp
[65/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o -MF src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o.d -o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o -c ../src/logging/LogLevel.cpp
[66/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o -c ../src/data/Interval.cpp
[67/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o -c ../src/data/QualityValues.cpp
[68/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o -MF src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o.d -o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o -c ../src/dagcon/AlignmentGraph.cpp
[69/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o -c ../src/pbmer/Kmer.cpp
[70/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o -c ../src/cli2/OptionTranslator.cpp
[71/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o -MF src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o.d -o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o -c ../src/parallel/ThreadCount.cpp
[72/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o -c ../src/cli2/PositionalArgumentTranslator.cpp
[73/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o -MF src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o.d -o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o -c ../src/logging/LogMessage.cpp
[74/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o -c ../src/pbmer/Mers.cpp
[75/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o -MF src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o.d -o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o -c ../src/parallel/FireAndForget.cpp
[76/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o -c ../src/pbmer/DnaBit.cpp
[77/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o -c ../src/pbmer/Parser.cpp
[78/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o -c ../src/pbmer/DbgNode.cpp
[79/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o -MF src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o.d -o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o -c ../src/logging/Logging.cpp
[80/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o -c ../src/poa/PoaConsensus.cpp
[81/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o -c ../src/pbmer/SparseHaplotype.cpp
[82/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o -c ../src/pbmer/KFNode.cpp
[83/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o -MF src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o.d -o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o -c ../src/third-party/base64/base64.cpp
[84/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o -MF src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o.d -o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o -c ../src/reports/TaskReport.cpp
[85/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o -c ../src/poa/PoaGraph.cpp
[86/182] cc -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o -MF src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o.d -o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o -c ../src/third-party/ksw2/kalloc.c
[87/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o -MF src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o.d -o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o -c ../src/third-party/edlib/edlib.cpp
[88/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o -c ../src/poa/PoaAlignmentMatrix.cpp
[89/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o -c ../src/poa/SparsePoa.cpp
[90/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o -c ../src/pbmer/Dbg.cpp
[91/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o -c ../src/utility/Base64.cpp
[92/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o -c ../src/utility/Deleters.cpp
[93/182] cc -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o -MF src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o.d -o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o -c ../src/third-party/ksw2/ksw2_simde.c
[94/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o -c ../src/utility/FastMod.cpp
[95/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o -c ../src/utility/MemoryConsumption.cpp
[96/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o -MF src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o.d -o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o -c ../src/reports/Report.cpp
[97/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o -c ../src/utility/Random.cpp
[98/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o -c ../src/poa/RangeFinder.cpp
[99/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o -MF src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o.d -o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o -c ../src/third-party/htslib/kfunc.cpp
[100/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o -c ../src/utility/StringUtils.cpp
[101/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -MF src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o.d -o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -c src/utility/PbcopperVersion.cpp
[102/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o -MF src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o.d -o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o -c ../src/third-party/sparc/sparcSimple.cpp
[103/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o -c ../src/utility/Stopwatch.cpp
[104/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o -c ../src/pbmer/KFGraph.cpp
[105/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o -c ../src/utility/TimeReporter.cpp
[106/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_Contains.cpp.o -MF tests/pbcopper_test.p/src_container_test_Contains.cpp.o.d -o tests/pbcopper_test.p/src_container_test_Contains.cpp.o -c ../tests/src/container/test_Contains.cpp
[107/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o -c ../src/poa/PoaGraphTraversals.cpp
[108/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o -MF src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o.d -o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o -c ../src/reports/ReportPrinter.cpp
[109/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o -MF tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o.d -o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o -c ../tests/src/container/test_CapacityPointer.cpp
[110/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o -MF src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o.d -o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o -c ../src/third-party/sparc/sparc.cpp
[111/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o -MF tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o.d -o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o -c ../tests/src/cuda/test_AsciiConversion.cpp
[112/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_DNAString.cpp.o -MF tests/pbcopper_test.p/src_container_test_DNAString.cpp.o.d -o tests/pbcopper_test.p/src_container_test_DNAString.cpp.o -c ../tests/src/container/test_DNAString.cpp
[113/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_Unordered.cpp.o -MF tests/pbcopper_test.p/src_container_test_Unordered.cpp.o.d -o tests/pbcopper_test.p/src_container_test_Unordered.cpp.o -c ../tests/src/container/test_Unordered.cpp
[114/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o -c ../src/utility/Alarm.cpp
[115/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o -MF tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o.d -o tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o -c ../tests/src/container/test_RHUnordered.cpp
[116/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o -c ../tests/src/cli2/test_Interface.cpp
[117/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o -c ../tests/src/cli2/test_PositionalArgumentTranslator.cpp
[118/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -c ../tests/src/cli2/test_VersionPrinter.cpp
[119/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o -c ../tests/src/cli2/test_OptionValue.cpp
[120/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -c ../tests/src/dagcon/test_Alignment.cpp
[121/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -MF tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -c ../tests/src/data/test_Accuracy.cpp
[122/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_MultiToolInterfaceHelpPrinter.cpp
[123/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_InterfaceHelpPrinter.cpp
[124/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o -c ../src/poa/PoaGraphImpl.cpp
[125/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c ../tests/src/dagcon/test_AlignmentGraph.cpp
[126/182] c++ -o src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,-soname,libpbcopper.so.2.3.0 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread
[127/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -c ../tests/src/cli2/test_OptionTranslator.cpp
[128/182] /usr/bin/meson --internal symbolextractor /build/reproducible-path/pbcopper-2.3.0+dfsg/build src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/libpbcopper.so.2.3.0.symbols
[129/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Frames.cpp.o -MF tests/pbcopper_test.p/src_data_test_Frames.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Frames.cpp.o -c ../tests/src/data/test_Frames.cpp
[130/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -c ../tests/src/cli2/test_CommandLineParser.cpp
[131/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o -c ../tests/src/cli2/test_CLI.cpp
[132/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_Results.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_Results.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o -c ../tests/src/cli2/test_Results.cpp
[133/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -MF tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -c ../tests/src/data/test_GenomicInterval.cpp
[134/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Interval.cpp.o -MF tests/pbcopper_test.p/src_data_test_Interval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Interval.cpp.o -c ../tests/src/data/test_Interval.cpp
[135/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -MF tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o.d -o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -c ../tests/src/data/test_IntervalTree.cpp
[136/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -MF tests/pbcopper_test.p/src_data_test_MovieName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -c ../tests/src/data/test_MovieName.cpp
[137/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -MF tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o.d -o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -c ../tests/src/data/test_QualityValues.cpp
[138/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -MF tests/pbcopper_test.p/src_data_test_Cigar.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -c ../tests/src/data/test_Cigar.cpp
[139/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_SNR.cpp.o -MF tests/pbcopper_test.p/src_data_test_SNR.cpp.o.d -o tests/pbcopper_test.p/src_data_test_SNR.cpp.o -c ../tests/src/data/test_SNR.cpp
[140/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o -MF tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o -c ../tests/src/data/test_RSMovieName.cpp
[141/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o -MF tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o.d -o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o -c ../tests/src/math/test_FishersExact.cpp
[142/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_ReadName.cpp.o -MF tests/pbcopper_test.p/src_data_test_ReadName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o -c ../tests/src/data/test_ReadName.cpp
[143/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o -MF tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o -c ../tests/src/data/test_RSReadName.cpp
[144/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_library_test_Library.cpp.o -MF tests/pbcopper_test.p/src_library_test_Library.cpp.o.d -o tests/pbcopper_test.p/src_library_test_Library.cpp.o -c ../tests/src/library/test_Library.cpp
[145/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_json_test_JSON.cpp.o -MF tests/pbcopper_test.p/src_json_test_JSON.cpp.o.d -o tests/pbcopper_test.p/src_json_test_JSON.cpp.o -c ../tests/src/json/test_JSON.cpp
[146/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o -MF tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o.d -o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o -c ../tests/src/math/test_ConfusionMatrix.cpp
[147/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -MF tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -c ../tests/src/data/test_MappedRead.cpp
[148/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o -c ../tests/src/pbmer/test_Kmer.cpp
[149/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_logging_test_Logging.cpp.o -MF tests/pbcopper_test.p/src_logging_test_Logging.cpp.o.d -o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o -c ../tests/src/logging/test_Logging.cpp
[150/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -c ../tests/src/pbmer/test_DbgNode.cpp
[151/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -c ../tests/src/parallel/test_FireAndForget.cpp
[152/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp
[153/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp
[154/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp
[155/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp
[156/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -c ../tests/src/pbmer/test_Parser.cpp
[157/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp
[158/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp
../tests/src/parallel/test_FireAndForgetIndexed.cpp: In member function ‘virtual void Parallel_FireAndForgetIndexed_strings_Test::TestBody()’:
../tests/src/parallel/test_FireAndForgetIndexed.cpp:15:25: warning: unused variable ‘numElements’ [-Wunused-variable]
15 | static const size_t numElements = 10000;
| ^~~~~~~~~~~
../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable]
28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; };
| ^~~~~~
[159/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Base64.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -c ../tests/src/utility/test_Base64.cpp
[160/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp
[161/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o -c ../tests/src/utility/test_Intrinsics.cpp
[162/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -c ../tests/src/utility/test_MinMax.cpp
[163/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -c ../tests/src/utility/test_FastMod.cpp
[164/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp
[165/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp
[166/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp
[167/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp
[168/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -c ../tests/src/utility/test_MoveAppend.cpp
[169/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp
[170/182] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o
[171/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -MF tests/pbcopper_test.p/src_qgram_test_Index.cpp.o.d -o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -c ../tests/src/qgram/test_Index.cpp
[172/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -c ../tests/src/utility/test_Overloaded.cpp
[173/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp
[174/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp
[175/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -c ../tests/src/utility/test_Shuffle.cpp
[176/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -MF tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o.d -o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -c ../tests/src/third-party/sparc/test_SparcConsensus.cpp
[177/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp
[178/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp
[179/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp
[180/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -c ../tests/src/utility/test_MoveInsert.cpp
[181/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp
[182/182] c++ -o tests/pbcopper_test tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o tests/pbcopper_test.p/src_container_test_Contains.cpp.o tests/pbcopper_test.p/src_container_test_DNAString.cpp.o tests/pbcopper_test.p/src_container_test_Unordered.cpp.o tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o tests/pbcopper_test.p/src_data_test_Frames.cpp.o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o tests/pbcopper_test.p/src_data_test_Interval.cpp.o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o tests/pbcopper_test.p/src_data_test_Read.cpp.o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o tests/pbcopper_test.p/src_data_test_SNR.cpp.o tests/pbcopper_test.p/src_json_test_JSON.cpp.o tests/pbcopper_test.p/src_library_test_Library.cpp.o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o tests/pbcopper_test.p/src_reports_test_Report.cpp.o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 '-Wl,-rpath,$ORIGIN/../src' -Wl,-rpath-link,/build/reproducible-path/pbcopper-2.3.0+dfsg/build/src -Wl,--start-group src/libpbcopper.so.2.3.0 /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a -Wl,--end-group -pthread
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg'
cd build && meson test --no-rebuild --print-errorlogs
1/2 pbcopper formatting check OK 0.11s
2/2 pbcopper gtest unittests OK 26.29s
Ok: 2
Expected Fail: 0
Fail: 0
Unexpected Pass: 0
Skipped: 0
Timeout: 0
Full log written to /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-logs/testlog.txt
make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--builddirectory=build
dh_prep -O--builddirectory=build
dh_auto_install -O--builddirectory=build
cd build && DESTDIR=/build/reproducible-path/pbcopper-2.3.0\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install
[1/9] Generating src/LibraryGitHash.h with a custom command
[2/8] Generating src/utility/PbcopperGitHash.cpp with a custom command
[2/3] Installing files
Installing src/libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu
Installing src/libpbcopper.a to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/LibraryInfo.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/PbcopperConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/Heteroduplex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/KMerIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/LSHIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/internal/HeteroduplexUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AffineAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AlignConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/BandedChainAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeedsConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/EdlibAlign.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/FindSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/GlobalLocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LinearAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/PairwiseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/SparseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignBlocks.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw_cpp.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/CLI.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Interface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/MultiToolInterface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Option.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionGroup.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/PositionalArgument.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Result.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Results.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/ResultsHandler.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Tool.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/VersionPrinterCallback.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/BuiltinOptions.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/CommandLineParser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HelpMetrics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HiddenOptionMode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/VersionPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitmaskContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/CapacityPointer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Contains.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/DNAString.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/RHUnordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Unordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/AsciiConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/Cuda.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/Alignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/AlignmentGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Accuracy.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CCSTag.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Cigar.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CigarOperation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Clipping.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameCodec.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameEncoders.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Frames.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/GenomicInterval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Interval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/IntervalTree.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/LocalContextFlags.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MappedRead.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Orientation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Position.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValues.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Read.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadId.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSMovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/SNR.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Strand.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Zmw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ClippingImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/MovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/RSMovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/json/JSON.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/json
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Bundle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Info.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/Logging.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogField.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogLevel.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogMessage.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/ConfusionMatrix.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/FishersExact.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForget.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForgetIndexed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/ThreadCount.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/WorkQueue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Bubble.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Dbg.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DbgNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DnaBit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Kmer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Mers.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Parser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/SparseHaplotype.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaConsensus.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/RangeFinder.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/SparsePoa.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/reports/Report.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/reports
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/Index.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHits.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Hashing-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Index-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/edlib.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/htslib/kfunc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/htslib
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/kxsort/kxsort.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/kxsort
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/kalloc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/ksw2.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/MPMCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/SPSCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/robin_hood/robin_hood.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/robin_hood
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/sparc/sparc.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/sparc
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Alarm.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Base64.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Deleters.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FastMod.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FileUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Intrinsics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MemoryConsumption.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MinMax.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveAppend.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveInsert.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/OStreamRedirect.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Overloaded.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PartitionElements.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PbcopperVersion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Random.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SafeSubtract.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SequenceUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Shuffle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Ssize.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Stopwatch.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/StringUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/TimeReporter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Unused.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/FileUtils-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/Stopwatch-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/third-party/json.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party
Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-private/pbcopper.pc to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig
Installing symlink pointing to libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include usr \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu
install -d -m 755 debian/libpbcopper2.3.0/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.a debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu
mv /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so.2.3.0 debian/libpbcopper2.3.0/usr/lib/aarch64-linux-gnu
PKGDEV=libpbcopper-dev
PKGSHL=libpbcopper2.3.0
install -d -m 755 debian/libpbcopper-dev/usr
mv debian/tmp/usr/include debian/libpbcopper-dev/usr
install -d -m 755 debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu/pkgconfig
make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg'
dh_installdocs -O--builddirectory=build
dh_installchangelogs -O--builddirectory=build
dh_installsystemduser -O--builddirectory=build
dh_perl -O--builddirectory=build
dh_link -O--builddirectory=build
dh_strip_nondeterminism -O--builddirectory=build
dh_compress -O--builddirectory=build
dh_fixperms -O--builddirectory=build
dh_missing -O--builddirectory=build
dh_dwz -a -O--builddirectory=build
dh_strip -a -O--builddirectory=build
dh_makeshlibs -a -O--builddirectory=build
dh_shlibdeps -a -O--builddirectory=build
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -O--builddirectory=build
dh_gencontrol -O--builddirectory=build
dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -O--builddirectory=build
dh_builddeb -O--builddirectory=build
dpkg-deb: building package 'libpbcopper2.3.0' in '../libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb'.
dpkg-deb: building package 'libpbcopper2.3.0-dbgsym' in '../libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_arm64.deb'.
dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_2.3.0+dfsg-2_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../pbcopper_2.3.0+dfsg-2_arm64.buildinfo
dpkg-genchanges --build=binary -O../pbcopper_2.3.0+dfsg-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/75368 and its subdirectories
I: Current time: Wed Mar 12 14:56:08 -12 2025
I: pbuilder-time-stamp: 1741834568
Thu Mar 13 02:56:11 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Thu Mar 13 02:56:11 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Thu Mar 13 03:00:29 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Thu Mar 13 03:00:30 UTC 2025 I: pbcopper_2.3.0+dfsg-2_arm64.changes:
Format: 1.8
Date: Thu, 25 Jan 2024 20:05:13 +0100
Source: pbcopper
Binary: libpbcopper-dev libpbcopper2.3.0 libpbcopper2.3.0-dbgsym
Architecture: arm64
Version: 2.3.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libpbcopper-dev - data structures, algorithms, and utilities for C++ applications -
libpbcopper2.3.0 - data structures, algorithms, and utilities for C++ applications
Closes: 1060791
Changes:
pbcopper (2.3.0+dfsg-2) unstable; urgency=medium
.
* Build-Depends: s/libboost1.81-dev/libboost-dev/
Closes: #1060791
Checksums-Sha1:
8bf1f7170c28fda23e245348e4fe4be0448e503f 995964 libpbcopper-dev_2.3.0+dfsg-2_arm64.deb
84a56744ddfa8b7a5683530c7d37e897116e38d2 13221512 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_arm64.deb
84c6ec5a8be69f5c90224e07eed90035d2229d8d 626916 libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb
d2b531a626af9d4427993af060a9a001cf342739 7588 pbcopper_2.3.0+dfsg-2_arm64.buildinfo
Checksums-Sha256:
67b741d90d08e1c7c039344f425bedeaefa6615cd87f25d7c193776c464b20f8 995964 libpbcopper-dev_2.3.0+dfsg-2_arm64.deb
de886e36c09de6a251045d6810dc054a7c5c62d50f0944fec36d80fe07e9432a 13221512 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_arm64.deb
276ea9f9a7650858168c8c35c42a8a3d77b0f12b44aac65d23f4fecf68f5f273 626916 libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb
a5d8874ff76bea7aadb364c7ef2687dc51188608dc24ded1dba072e1df9ead19 7588 pbcopper_2.3.0+dfsg-2_arm64.buildinfo
Files:
9c39f892db876e1f4de25765293d4b61 995964 libdevel optional libpbcopper-dev_2.3.0+dfsg-2_arm64.deb
80ffaa95f71275cc5a13b4c0731e62f0 13221512 debug optional libpbcopper2.3.0-dbgsym_2.3.0+dfsg-2_arm64.deb
4734bce3201e09d5169b0f690e26bfbe 626916 libs optional libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb
a7084c2c0b9e8cd29e93e3f4a8138eef 7588 science optional pbcopper_2.3.0+dfsg-2_arm64.buildinfo
Thu Mar 13 03:00:31 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_10-61499.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CQJtVvon/pbcopper_2.3.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CQJtVvon/pbcopper_2.3.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CQJtVvon/pbcopper_2.3.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CQJtVvon/b1/pbcopper_2.3.0+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.CQJtVvon/b2/pbcopper_2.3.0+dfsg-2_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 237ms
CPU time consumed: 238ms
Thu Mar 13 03:00:32 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Thu Mar 13 03:00:32 UTC 2025 I: pbcopper from unstable built successfully and reproducibly on arm64.
Thu Mar 13 03:00:33 UTC 2025 I: Submitting .buildinfo files to external archives:
Thu Mar 13 03:00:33 UTC 2025 I: Submitting 12K b1/pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc
Thu Mar 13 03:00:34 UTC 2025 I: Submitting 12K b2/pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc
Thu Mar 13 03:00:34 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu Mar 13 03:00:34 UTC 2025 I: Done submitting .buildinfo files.
Thu Mar 13 03:00:34 UTC 2025 I: Removing signed pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc files:
removed './b1/pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc'
removed './b2/pbcopper_2.3.0+dfsg-2_arm64.buildinfo.asc'