Fri Mar 21 08:19:57 UTC 2025 I: starting to build perlprimer/unstable/arm64 on jenkins on '2025-03-21 08:19'
Fri Mar 21 08:19:57 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/87527/console.log
Fri Mar 21 08:19:57 UTC 2025 I: Downloading source for unstable/perlprimer=1.2.4-2
--2025-03-21 08:19:58-- http://deb.debian.org/debian/pool/main/p/perlprimer/perlprimer_1.2.4-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2092 (2.0K) [text/prs.lines.tag]
Saving to: ‘perlprimer_1.2.4-2.dsc’
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2025-03-21 08:19:58 (344 MB/s) - ‘perlprimer_1.2.4-2.dsc’ saved [2092/2092]
Fri Mar 21 08:19:58 UTC 2025 I: perlprimer_1.2.4-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: perlprimer
Binary: perlprimer, perlprimer-doc
Architecture: all
Version: 1.2.4-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>
Homepage: http://perlprimer.sourceforge.net
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/perlprimer
Vcs-Git: https://salsa.debian.org/med-team/perlprimer.git
Build-Depends: debhelper-compat (= 13)
Package-List:
perlprimer deb science optional arch=all
perlprimer-doc deb doc optional arch=all
Checksums-Sha1:
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422944cc36af799e593064d6d9e72abf91c71c32891a44379bb6bbd81a3b046b 11260 perlprimer_1.2.4-2.debian.tar.xz
Files:
277373aeff21bc3a62111f233b1f8010 368497 perlprimer_1.2.4.orig.tar.gz
8322ec1d0805c4b1b97603d5fdbcd246 11260 perlprimer_1.2.4-2.debian.tar.xz
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Fri Mar 21 08:19:58 UTC 2025 I: Checking whether the package is not for us
Fri Mar 21 08:19:58 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net.
Fri Mar 21 08:19:58 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Fri Mar 21 08:20:22 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Mar 20 20:20:00 -12 2025
I: pbuilder-time-stamp: 1742545200
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [perlprimer_1.2.4-2.dsc]
I: copying [./perlprimer_1.2.4.orig.tar.gz]
I: copying [./perlprimer_1.2.4-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./perlprimer_1.2.4-2.dsc: unsupported subcommand
dpkg-source: info: extracting perlprimer in perlprimer-1.2.4
dpkg-source: info: unpacking perlprimer_1.2.4.orig.tar.gz
dpkg-source: info: unpacking perlprimer_1.2.4-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying privacy.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/48646/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='608585f219924bd8a09d7dcbe3fc5a6f'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='48646'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.flWUCS5w/pbuilderrc_u0bB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.flWUCS5w/b1 --logfile b1/build.log perlprimer_1.2.4-2.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink04-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/48646/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19919 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu76{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.4 MB of archives. After unpacking 83.1 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-3 [337 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-3 [103 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-3 [43.5 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-7 [285 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-3 [9526 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.3+b1 [630 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Fetched 20.4 MB in 0s (166 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 19919 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
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Preparing to unpack .../01-libmagic-mgc_1%3a5.46-3_arm64.deb ...
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Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
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Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ...
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Preparing to unpack .../07-bsdextrautils_2.40.4-5_arm64.deb ...
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Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-7) ...
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Setting up libelf1t64:arm64 (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up libicu76:arm64 (76.1-3) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.3+b1) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.24.1) ...
Processing triggers for libc-bin (2.41-6) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/perlprimer-1.2.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../perlprimer_1.2.4-2_source.changes
dpkg-buildpackage: info: source package perlprimer
dpkg-buildpackage: info: source version 1.2.4-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
dpkg-source: info: using options from perlprimer-1.2.4/debian/source/options: --single-debian-patch
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
create-stamp debian/debhelper-build-stamp
dh_prep
dh_install
dh_installdocs
dh_installchangelogs
dh_installman
dh_installmime
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: package perlprimer: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'perlprimer-doc' in '../perlprimer-doc_1.2.4-2_all.deb'.
dpkg-deb: building package 'perlprimer' in '../perlprimer_1.2.4-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../perlprimer_1.2.4-2_arm64.buildinfo
dpkg-genchanges --build=binary -O../perlprimer_1.2.4-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-source: info: using options from perlprimer-1.2.4/debian/source/options: --single-debian-patch
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/48646 and its subdirectories
I: Current time: Thu Mar 20 20:20:21 -12 2025
I: pbuilder-time-stamp: 1742545221
Fri Mar 21 08:20:23 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Fri Mar 21 08:20:23 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Fri Mar 21 08:20:51 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Fri Mar 21 08:20:52 UTC 2025 I: perlprimer_1.2.4-2_arm64.changes:
Format: 1.8
Date: Fri, 04 Dec 2020 22:57:35 +0100
Source: perlprimer
Binary: perlprimer perlprimer-doc
Architecture: all
Version: 1.2.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
perlprimer - Graphical design of primers for PCR
perlprimer-doc - Tutorial to perlprimer
Changes:
perlprimer (1.2.4-2) unstable; urgency=medium
.
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Rules-Requires-Root: no (routine-update)
Checksums-Sha1:
c6a78aa584b97c270caad61d2b1a335004f2d4a3 252908 perlprimer-doc_1.2.4-2_all.deb
5ed6e9b93e4a7a83c34d8282fb0dff375eef0a12 97980 perlprimer_1.2.4-2_all.deb
7a2ab1d7fabeac818c116f93227c1d52f5a20847 4832 perlprimer_1.2.4-2_arm64.buildinfo
Checksums-Sha256:
400e2f7dfe21ebe018770a098aff0a62599014eb2ae67af11b46cdb052fb22ce 252908 perlprimer-doc_1.2.4-2_all.deb
28ae5590bceb8dde3fe2f076c71ee6b137c4c04e10ee77f94f2e55f9992c6810 97980 perlprimer_1.2.4-2_all.deb
b1684c137b1fcf0ae03fbd10b42f35d645cd3cc386dc64dc096639d69af32689 4832 perlprimer_1.2.4-2_arm64.buildinfo
Files:
8ab299c3b63dd679d09cac28074faa45 252908 doc optional perlprimer-doc_1.2.4-2_all.deb
2f535485f1a0a26bdc3275fd14a3b5e6 97980 science optional perlprimer_1.2.4-2_all.deb
635f6026d38fae078d4151e71c38bace 4832 science optional perlprimer_1.2.4-2_arm64.buildinfo
Fri Mar 21 08:20:53 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_12-87527.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.flWUCS5w/perlprimer_1.2.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.flWUCS5w/perlprimer_1.2.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.flWUCS5w/perlprimer_1.2.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.flWUCS5w/b1/perlprimer_1.2.4-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.flWUCS5w/b2/perlprimer_1.2.4-2_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 222ms
CPU time consumed: 221ms
Fri Mar 21 08:20:54 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Fri Mar 21 08:20:54 UTC 2025 I: perlprimer from unstable built successfully and reproducibly on arm64.
Fri Mar 21 08:20:55 UTC 2025 I: Submitting .buildinfo files to external archives:
Fri Mar 21 08:20:55 UTC 2025 I: Submitting 8.0K b1/perlprimer_1.2.4-2_arm64.buildinfo.asc
Fri Mar 21 08:20:56 UTC 2025 I: Submitting 8.0K b2/perlprimer_1.2.4-2_arm64.buildinfo.asc
Fri Mar 21 08:20:59 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Mar 21 08:20:59 UTC 2025 I: Done submitting .buildinfo files.
Fri Mar 21 08:20:59 UTC 2025 I: Removing signed perlprimer_1.2.4-2_arm64.buildinfo.asc files:
removed './b1/perlprimer_1.2.4-2_arm64.buildinfo.asc'
removed './b2/perlprimer_1.2.4-2_arm64.buildinfo.asc'