Fri Jul 4 03:10:05 UTC 2025 I: starting to build python-cobra/unstable/arm64 on jenkins on '2025-07-04 03:09' Fri Jul 4 03:10:05 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/82129/console.log Fri Jul 4 03:10:05 UTC 2025 I: Downloading source for unstable/python-cobra=0.29.1-3 --2025-07-04 03:10:05-- http://deb.debian.org/debian/pool/main/p/python-cobra/python-cobra_0.29.1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3080 (3.0K) [text/prs.lines.tag] Saving to: ‘python-cobra_0.29.1-3.dsc’ 0K ... 100% 273M=0s 2025-07-04 03:10:05 (273 MB/s) - ‘python-cobra_0.29.1-3.dsc’ saved [3080/3080] Fri Jul 4 03:10:05 UTC 2025 I: python-cobra_0.29.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cobra Binary: python3-cobra, python-cobra-data Architecture: any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all Version: 0.29.1-3 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://opencobra.github.io/cobrapy/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/python-cobra Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git Testsuite: autopkgtest Testsuite-Triggers: python3-jsonschema, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-sbml5, python3-scipy, quilt Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, cython3, python3-pytest , python3-pytest-benchmark , python3-pytest-mock , python3-jsonschema , libsbml5-dev , python3-matplotlib , python3-platformdirs , python3-diskcache , python3-httpx , python3-pydantic , python3-rich Package-List: python-cobra-data deb python optional arch=all python3-cobra deb python optional arch=any-amd64,arm64,armel,armhf,any-i386,mips,mips64el,mipsel,ppc64el,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32 Checksums-Sha1: 3c26cc11421692c1d151377cffe83b23eac4a1a7 3651233 python-cobra_0.29.1.orig.tar.gz c72a9414f5b023ff91099ec82a50eb442f897fcf 11104 python-cobra_0.29.1-3.debian.tar.xz Checksums-Sha256: 2c60269959e212525ca79e85d990dba48c92e30db5795446f48e777912fc92a2 3651233 python-cobra_0.29.1.orig.tar.gz 3bbec91aab04b021fa787a226b5c0b27627d92ac3f6f680d25853d819493fa2e 11104 python-cobra_0.29.1-3.debian.tar.xz Files: 2100d8959c33d2f04185dfcaab39c9e0 3651233 python-cobra_0.29.1.orig.tar.gz 8cd546abe5ed5e5f85eea1022b0148e0 11104 python-cobra_0.29.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmhlti8RHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrIOxAAkfsFF760CAigvkgZ+OW/hM1bUBRdhDjr rTbjKGj9L1nZqpyY506LIXKRXZl8sLzxbO3Sb9ctthYCbPtWU+BLJicBbdJe9NFm wDLZuBP4kVRZ6+7bfGXMO+sitJLI5UjDBFChmPvB9MPR/FstDR0s32VLwu2BZxwx yJKLfsaqX2QH2llz3Did3pxbVpf4shosA+8vlr+OjPuJLPrQa1rR2vAwE44I0ISc rWoWeKWIq1jm1KepxiAZMoVCBLdUHn6IBfFWXTu1+vDvng9cGOxSqTHSRQLT875V G6eptvn5ZkFHHcTvdQbkch/W0YWszaBWALC8H9e7U+mKtluB7kejKVmdXu5xmT5w DD9uNgcebmLtOcxzQ8ioJ+EcvyRmJS3IQJCjq1k4T1l1XNN+KBTEJIlWmcvxgxkS nVKJ9OK1LPEZyw1HKSdP9x30gKWlnxYUk1tLUczEYeoPgJWmj+k6ywJxQ/Db7xOn 0t15uW2TCXJQhiBpAhlWazzMZmt1oPXFrR/gyfqt9GkfXMR7yG4sE2jYd4lOGxC5 oOrT6Eiqcx34XAwDmjoQDmtx0aCJtYGJs8WgL3jyvr+tX47NTYmrRjc27w3YAWAy 4zwbuVAc5Of+SqqlvZrYJtVPsB+0uEK/m4YC5TcT7jRIwpJtSQiY5kW5rPSPWnWs b3lsv0zhhmk= =xkST -----END PGP SIGNATURE----- Fri Jul 4 03:10:05 UTC 2025 I: Checking whether the package is not for us Fri Jul 4 03:10:05 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Jul 4 03:10:05 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Jul 4 03:14:13 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 3 15:10:07 -12 2025 I: pbuilder-time-stamp: 1751598607 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cobra_0.29.1-3.dsc] I: copying [./python-cobra_0.29.1.orig.tar.gz] I: copying [./python-cobra_0.29.1-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.29.1-3.dsc: no acceptable signature found dpkg-source: info: extracting python-cobra in python-cobra-0.29.1 dpkg-source: info: unpacking python-cobra_0.29.1.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.29.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying xfail_test_show_versions.patch dpkg-source: info: applying ignore_tests.patch dpkg-source: info: applying 32-bit-test.patch dpkg-source: info: applying no_future_dependency.patch dpkg-source: info: applying remove-appdirs.patch dpkg-source: info: applying a2b9d00a04b85b8c8eb12e4deba29ce2147896cf.patch dpkg-source: info: applying pr1452.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/469395/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='469395' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JcHweNLA/pbuilderrc_VTcs --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JcHweNLA/b1 --logfile b1/build.log python-cobra_0.29.1-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/469395/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5-dev, python3-matplotlib, python3-platformdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19963 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang (>= 1.7.0-1~); however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 5.0.8-1~); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5-dev; however: Package libsbml5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-platformdirs; however: Package python3-platformdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbtf2{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcxsparse4{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libklu2{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldl3{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libparu1{a} libpipeline1{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librbio4{a} libreadline8t64{a} libsbml5-dev{a} libsbml5t64{a} libsharpyuv0{a} libspex3{a} libspqr4{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libumfpack6{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libzopfli1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-annotated-types{a} python3-anyio{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-dnspython{a} python3-email-validator{a} python3-fonttools{a} python3-fs{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-linkify-it{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-benchmark{a} python3-pytest-mock{a} python3-pytz{a} python3-referencing{a} python3-requests{a} python3-rich{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-scipy{a} python3-setuptools{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-uc-micro{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libgraphblas-dev libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cryptography python3-cssselect python3-elasticsearch python3-fqdn python3-freezegun python3-graphviz python3-h2 python3-html5lib python3-isoduration python3-jinja2 python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygal python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-tables python3-tz python3-uritemplate python3-webcolors python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 218 newly installed, 0 to remove and 0 not upgraded. Need to get 145 MB of archives. After unpacking 640 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1 [136 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-19 [361 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.4+ds-1 [3604 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.0-2 [1454 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.48-1 [274 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.3 [318 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.3 [387 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.3-1 [190 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libsuitesparseconfig7 arm64 1:7.10.1+dfsg-1 [32.2 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libamd3 arm64 1:7.10.1+dfsg-1 [46.6 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.1-2 [111 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libbtf2 arm64 1:7.10.1+dfsg-1 [32.8 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libcamd3 arm64 1:7.10.1+dfsg-1 [43.6 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libccolamd3 arm64 1:7.10.1+dfsg-1 [46.1 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libcolamd3 arm64 1:7.10.1+dfsg-1 [39.9 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libcholmod5 arm64 1:7.10.1+dfsg-1 [545 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libcxsparse4 arm64 1:7.10.1+dfsg-1 [84.2 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.7.1-1 [145 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-4 [78.5 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.3-1 [1426 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.5.4-4 [415 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libglpk40 arm64 5.0-1+b2 [346 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libklu2 arm64 1:7.10.1+dfsg-1 [90.6 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libldl3 arm64 1:7.10.1+dfsg-1 [32.7 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libsuitesparse-mongoose3 arm64 1:7.10.1+dfsg-1 [52.5 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libumfpack6 arm64 1:7.10.1+dfsg-1 [237 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 librbio4 arm64 1:7.10.1+dfsg-1 [46.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libspqr4 arm64 1:7.10.1+dfsg-1 [136 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libspex3 arm64 1:7.10.1+dfsg-1 [63.7 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libparu1 arm64 1:7.10.1+dfsg-1 [69.4 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.1-2 [3726 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libsuitesparse-dev arm64 1:7.10.1+dfsg-1 [1315 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libglpk-dev arm64 5.0-1+b2 [431 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1+b1 [442 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2 [190 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.5-2 [1976 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.5-2 [4890 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.5-1 [10.4 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libsbml5t64 arm64 5.20.4+dfsg-0.1 [1883 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libsbml5-dev arm64 5.20.4+dfsg-0.1 [3037 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-3 [325 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.2 [221 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libzopfli1 arm64 1.0.3-3 [95.2 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-sniffio all 1.3.1-1 [7120 B] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-anyio all 4.8.0-3 [63.6 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-attr all 25.3.0-1 [69.5 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1+b1 [190 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-depinfo arm64 2.2.0-3 [11.6 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.5-2 [505 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.5-1 [26.1 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-diskcache all 5.6.3-1 [34.4 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-dnspython all 2.7.0-1 [164 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-7 [95.2 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.4.0-1 [1139 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-2 [25.3 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.15.3-1 [14.9 MB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-5 [4148 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-unicodedata2 arm64 15.1.0+ds-1+b5 [298 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 python3-zopfli arm64 0.2.3.post1-1 [10.2 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.57.0-1 [1366 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 python3-h11 all 0.14.0-1.1 [50.6 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 python3-httpcore all 1.0.7-1 [44.7 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 python3-mdurl all 0.1.2-1 [9444 B] Get: 172 http://deb.debian.org/debian unstable/main arm64 python3-uc-micro all 1.0.3-1 [5744 B] Get: 173 http://deb.debian.org/debian unstable/main arm64 python3-linkify-it all 2.0.3-1 [18.7 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 python3-markdown-it all 3.0.0-3 [59.5 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 python3-rich all 13.9.4-1 [203 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 python3-httpx all 0.28.1-1 [76.2 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 181 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 187 http://deb.debian.org/debian unstable/main arm64 python3-rpds-py arm64 0.21.0-2+b1 [226 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 python3-referencing all 0.36.2-1 [23.7 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 190 http://deb.debian.org/debian unstable/main arm64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-5+b1 [495 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.5-2 [105 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.4-1 [9572 B] Get: 195 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.1.0-5+b1 [81.8 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-4 [23.7 MB] Get: 199 http://deb.debian.org/debian unstable/main arm64 python3-swiglpk arm64 5.0.10-2+b3 [64.4 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 python3-optlang all 1.8.3-1 [5375 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 python3-pytz all 2025.2-3 [152 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-9 [3877 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 python3-pip all 25.1.1+dfsg-1 [1457 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 python3-pipdeptree arm64 2.2.0-3 [20.6 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 python3-pydantic-core arm64 2.27.2-3+b1 [1278 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 python3-pydantic arm64 2.10.6-2 [346 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 python3-pytest-benchmark all 5.1.0-1 [44.4 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 python3-pytest-mock all 3.14.0-3 [18.4 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.3.0-2 [114 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 python3-ruamel.yaml.clib arm64 0.2.12+ds-1+b1 [117 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 python3-sbml5 arm64 5.20.4+dfsg-0.1 [3114 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Fetched 145 MB in 3s (57.3 MB/s) Preconfiguring packages ... 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Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libcamd3:arm64 (1:7.10.1+dfsg-1) ... Setting up libsbml5-dev (5.20.4+dfsg-0.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.84.3-1) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libglpk40:arm64 (5.0-1+b2) ... Setting up librbio4:arm64 (1:7.10.1+dfsg-1) ... Setting up liblapack-dev:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libccolamd3:arm64 (1:7.10.1+dfsg-1) ... Setting up libreadline8t64:arm64 (8.2-6) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.1-3_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.1' rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 benchmark: 5.1.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.1 configfile: tox.ini plugins: mock-3.14.0, benchmark-5.1.0, typeguard-4.4.2, anyio-4.8.0 collected 554 items tests/test_core/test_configuration.py ...... [ 1%] tests/test_core/test_core_reaction.py ..........ss...................... [ 7%] ...................x....... [ 12%] tests/test_core/test_dictlist.py ...................... [ 16%] tests/test_core/test_formula.py ..... [ 16%] tests/test_core/test_gene.py . [ 17%] tests/test_core/test_gpr.py ......................x..x.................. [ 25%] ........................... [ 29%] tests/test_core/test_group.py .. [ 30%] tests/test_core/test_metabolite.py ...ss.ss. [ 31%] tests/test_core/test_model.py .......................................... [ 39%] ...........s..s.ss. [ 42%] tests/test_core/test_solution.py .ss [ 43%] tests/test_flux_analysis/test_deletion.py ....s..... [ 45%] tests/test_flux_analysis/test_fastcc.py .... [ 46%] tests/test_flux_analysis/test_geometric.py .. [ 46%] tests/test_flux_analysis/test_moma.py . [ 46%] tests/test_flux_analysis/test_parsimonious.py .. [ 46%] tests/test_flux_analysis/test_reaction.py . [ 47%] tests/test_flux_analysis/test_room.py .... [ 47%] tests/test_flux_analysis/test_variability.py ....... [ 49%] tests/test_flux_analysis/test_deletion.py sss [ 49%] tests/test_flux_analysis/test_moma.py s [ 49%] tests/test_flux_analysis/test_deletion.py ...... [ 50%] tests/test_flux_analysis/test_gapfilling.py . [ 51%] tests/test_flux_analysis/test_helpers.py ... [ 51%] tests/test_flux_analysis/test_loopless.py ..... [ 52%] tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%] tests/test_flux_analysis/test_variability.py ....... [ 54%] tests/test_io/test_annotation.py .. [ 55%] tests/test_io/test_annotation_format.py .. [ 55%] tests/test_io/test_io_order.py ........................... [ 60%] tests/test_io/test_json.py .... [ 61%] tests/test_io/test_mat.py ............... [ 63%] tests/test_io/test_notes.py . [ 64%] tests/test_io/test_pickle.py .. [ 64%] tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............. [ 71%] tests/test_io/test_web/test_load.py ..ssss. [ 73%] tests/test_io/test_yaml.py .x [ 73%] tests/test_manipulation/test_annotate.py . [ 73%] tests/test_manipulation/test_delete.py ....... [ 74%] tests/test_manipulation/test_modify.py ... [ 75%] tests/test_manipulation/test_validate.py .. [ 75%] tests/test_medium/test_boundary_types.py ........... [ 77%] tests/test_medium/test_minimal_medium.py .......... [ 79%] tests/test_sampling/test_achr.py ...... [ 80%] tests/test_sampling/test_optgp.py ...... [ 81%] tests/test_sampling/test_sampling.py .......... [ 83%] tests/test_summary/test_metabolite_summary.py ................. [ 86%] tests/test_summary/test_model_summary.py ............... [ 89%] tests/test_summary/test_reaction_summary.py .................... [ 92%] tests/test_util/test_array.py .. [ 93%] tests/test_util/test_context.py ... [ 93%] tests/test_util/test_process_pool.py ............... [ 96%] tests/test_util/test_solver.py ..............s [ 99%] tests/test_util/test_util.py ...x [100%] =============================== warnings summary =============================== :488 :488 :488: DeprecationWarning: builtin type SwigPyPacked has no __module__ attribute :488 :488 :488: DeprecationWarning: builtin type SwigPyObject has no __module__ attribute :488 :488: DeprecationWarning: builtin type swigvarlink has no __module__ attribute .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'. warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'. warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'. warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'. warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'. warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'. warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'. warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'. warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_model.py::test_reaction_delete /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead warn( .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements .pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list warn("need to pass in a list") .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.13_cobra/build/tests/test_core/test_model.py::test_change_objective /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead. warn("Please use reaction.flux instead.", DeprecationWarning) .pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_deletion.py:437: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol.growth) .pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_deletion.py:438: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol_one.growth) .pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_gapfilling.py: 980 warnings /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/conftest.py:53: DeprecationWarning: BoolOp.__init__ missing 1 required positional argument: 'op'. This will become an error in Python 3.15. return _load(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_flux_analysis/test_gapfilling.py: 4020 warnings /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/conftest.py:53: DeprecationWarning: Name.__init__ missing 1 required positional argument: 'id'. This will become an error in Python 3.15. return _load(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_json.py: 34 warnings .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py: 34 warnings .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_pickle.py: 34 warnings .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_yaml.py: 34 warnings /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/conftest.py:17: DeprecationWarning: Name.__init__ missing 1 required positional argument: 'id'. This will become an error in Python 3.15. return load(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_json.py: 11 warnings .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py: 11 warnings .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_pickle.py: 11 warnings .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_yaml.py: 11 warnings /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/conftest.py:17: DeprecationWarning: BoolOp.__init__ missing 1 required positional argument: 'op'. This will become an error in Python 3.15. return load(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_json.py: 1 warning .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py: 5 warnings .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_pickle.py: 1 warning .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_sbml.py: 9 warnings .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_yaml.py: 1 warning /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py::test_load_matlab_model[raven_model-data_directory-raven.mat] .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py::test_save_matlab_model[raven_model-raven.mat] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py:32: DeprecationWarning: BoolOp.__init__ missing 1 required positional argument: 'op'. This will become an error in Python 3.15. return load(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py::test_load_matlab_model[raven_model-data_directory-raven.mat] .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py::test_load_matlab_model[raven_model-data_directory-raven.mat] .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py::test_load_matlab_model[raven_model-data_directory-raven.mat] .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py::test_save_matlab_model[raven_model-raven.mat] .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py::test_save_matlab_model[raven_model-raven.mat] .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py::test_save_matlab_model[raven_model-raven.mat] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/test_mat.py:32: DeprecationWarning: Name.__init__ missing 1 required positional argument: 'id'. This will become an error in Python 3.15. return load(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_pickle.py: 34 warnings /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/test_pickle.py:24: DeprecationWarning: Name.__init__ missing 1 required positional argument: 'id'. This will become an error in Python 3.15. pickle_model = load_function(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_pickle.py: 11 warnings /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/test_pickle.py:24: DeprecationWarning: BoolOp.__init__ missing 1 required positional argument: 'op'. This will become an error in Python 3.15. pickle_model = load_function(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_sbml.py: 136 warnings /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/test_sbml.py:268: DeprecationWarning: Name.__init__ missing 1 required positional argument: 'id'. This will become an error in Python 3.15. reference_model = load(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_sbml.py: 44 warnings /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/test_sbml.py:268: DeprecationWarning: BoolOp.__init__ missing 1 required positional argument: 'op'. This will become an error in Python 3.15. reference_model = load(infile) .pybuild/cpython3_3.13_cobra/build/tests/test_io/test_yaml.py::test_save_yaml_model /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/tests/test_io/test_yaml.py:29: PendingDeprecationWarning: you should no longer specify 'unsafe'. For **dumping only** use yaml=YAML(typ='full') yaml = YAML(typ="unsafe") .pybuild/cpython3_3.13_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.13_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.13_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/boundary_types.py:74: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` compartment = most[matches[most]][0] .pybuild/cpython3_3.13_cobra/build/tests/test_util/test_process_pool.py::test_with_context /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/process_pool.py:71: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://pytest-mock.readthedocs.io/en/latest/remarks.html#usage-as-context-manager self._pool.__enter__() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ------------------------------------------------------------------------------------------------------------------------ benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------- Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[glpk] 2.4398 (1.0) 25.6400 (1.0) 2.5585 (1.01) 0.5245 (1.29) 2.5202 (1.00) 0.0400 (1.0) 14;140 390,853.9666 (0.99) 4172 1 test_subtract_metabolite_benchmark[gurobi] 2.4398 (1.0) 26.3201 (1.03) 2.5379 (1.0) 0.5674 (1.39) 2.5199 (1.0) 0.0799 (1.99) 13;49 394,024.6447 (1.0) 4229 1 test_subtract_metabolite_benchmark[cplex] 2.4799 (1.02) 27.6000 (1.08) 2.5677 (1.01) 0.4072 (1.0) 2.5600 (1.02) 0.0403 (1.01) 11;337 389,447.3790 (0.99) 4329 1 test_achr_sample_benchmark 176.1611 (72.20) 319.4020 (12.46) 185.1767 (72.96) 12.9726 (31.86) 181.2412 (71.92) 3.3201 (82.91) 101;143 5,400.2471 (0.01) 1131 1 test_change_objective_benchmark[optlang-glpk] 230.7610 (94.58) 930.3261 (36.28) 250.6361 (98.76) 43.6058 (107.08) 241.6819 (95.91) 8.4688 (211.47) 125;344 3,989.8475 (0.01) 2491 1 test_optgp_sample_benchmark 271.5620 (111.30) 414.7619 (16.18) 282.3400 (111.25) 15.8563 (38.94) 276.5211 (109.73) 4.3600 (108.87) 161;246 3,541.8284 (0.01) 1474 1 test_loopless_benchmark_after 1,380.5688 (565.85) 1,839.1730 (71.73) 1,502.2912 (591.94) 69.2170 (169.98) 1,490.5495 (591.51) 91.7199 (>1000.0) 80;3 665.6499 (0.00) 282 1 test_loopless_benchmark_before 5,647.4369 (>1000.0) 6,062.2001 (236.44) 5,796.7710 (>1000.0) 75.2596 (184.82) 5,787.6380 (>1000.0) 104.2807 (>1000.0) 33;2 172.5098 (0.00) 100 1 test_minimal_medium_mip_benchmark 7,709.5309 (>1000.0) 8,336.4150 (325.13) 8,033.4999 (>1000.0) 130.2203 (319.79) 8,038.3130 (>1000.0) 175.7016 (>1000.0) 25;0 124.4787 (0.00) 80 1 test_minimal_medium_linear_benchmark 8,075.6941 (>1000.0) 9,033.1391 (352.31) 8,336.3164 (>1000.0) 182.5853 (448.38) 8,282.0550 (>1000.0) 219.2815 (>1000.0) 16;3 119.9571 (0.00) 80 1 test_copy_benchmark[optlang-glpk] 13,657.6500 (>1000.0) 415,383.0579 (>1000.0) 21,227.7697 (>1000.0) 47,589.2479 (>1000.0) 14,050.8520 (>1000.0) 418.9420 (>1000.0) 1;12 47.1081 (0.00) 71 1 test_gpr_equality_benchmark 18,791.2039 (>1000.0) 19,375.1671 (755.66) 19,005.8304 (>1000.0) 152.4657 (374.42) 18,954.0051 (>1000.0) 191.6213 (>1000.0) 10;0 52.6154 (0.00) 43 1 test_deepcopy_benchmark 22,873.9111 (>1000.0) 633,229.1341 (>1000.0) 39,375.4169 (>1000.0) 90,630.7261 (>1000.0) 23,698.9160 (>1000.0) 7,396.0387 (>1000.0) 1;1 25.3966 (0.00) 45 1 test_single_reaction_deletion_benchmark[glpk] 24,359.8409 (>1000.0) 25,110.2862 (979.34) 24,651.2845 (>1000.0) 176.2563 (432.84) 24,622.1621 (>1000.0) 160.3013 (>1000.0) 9;3 40.5658 (0.00) 39 1 test_fastcc_benchmark[glpk] 60,980.0420 (>1000.0) 61,769.1269 (>1000.0) 61,429.9568 (>1000.0) 316.6291 (777.56) 61,406.5251 (>1000.0) 485.8127 (>1000.0) 2;0 16.2787 (0.00) 5 1 test_add_metabolite_benchmark[cplex] 64,516.1050 (>1000.0) 64,877.0279 (>1000.0) 64,712.1765 (>1000.0) 104.0890 (255.62) 64,720.0064 (>1000.0) 111.1205 (>1000.0) 6;0 15.4530 (0.00) 16 1 test_add_metabolite_benchmark[gurobi] 64,741.9058 (>1000.0) 65,035.0680 (>1000.0) 64,832.6299 (>1000.0) 91.5332 (224.78) 64,801.4070 (>1000.0) 71.1601 (>1000.0) 3;3 15.4243 (0.00) 16 1 test_add_metabolite_benchmark[glpk] 64,954.5889 (>1000.0) 65,243.9101 (>1000.0) 65,044.3588 (>1000.0) 79.3361 (194.83) 65,026.9090 (>1000.0) 118.4409 (>1000.0) 4;0 15.3741 (0.00) 16 1 test_optgp_init_benchmark 112,251.3800 (>1000.0) 124,900.5431 (>1000.0) 114,247.2373 (>1000.0) 4,048.0027 (>1000.0) 112,945.1441 (>1000.0) 1,072.6672 (>1000.0) 1;1 8.7529 (0.00) 9 1 test_gpr_symbolism_benchmark 113,348.6270 (>1000.0) 120,996.5979 (>1000.0) 115,240.6751 (>1000.0) 2,392.4370 (>1000.0) 114,423.7539 (>1000.0) 1,772.9725 (>1000.0) 1;1 8.6775 (0.00) 9 1 test_achr_init_benchmark 113,542.9891 (>1000.0) 123,508.6538 (>1000.0) 115,851.3315 (>1000.0) 4,294.0866 (>1000.0) 113,909.8310 (>1000.0) 2,987.5592 (>1000.0) 1;1 8.6318 (0.00) 5 1 test_single_gene_deletion_linear_moma_benchmark[glpk] 174,659.7111 (>1000.0) 193,185.4729 (>1000.0) 178,939.5874 (>1000.0) 7,994.2084 (>1000.0) 175,211.8350 (>1000.0) 5,698.8779 (>1000.0) 1;1 5.5885 (0.00) 5 1 test_double_gene_deletion_benchmark 247,891.9139 (>1000.0) 258,865.2258 (>1000.0) 252,359.7991 (>1000.0) 4,562.6034 (>1000.0) 253,135.6681 (>1000.0) 7,042.2364 (>1000.0) 1;0 3.9626 (0.00) 5 1 test_single_gene_deletion_linear_room_benchmark[glpk] 249,042.8421 (>1000.0) 268,278.9278 (>1000.0) 254,085.1626 (>1000.0) 8,005.2637 (>1000.0) 251,332.1759 (>1000.0) 6,063.9895 (>1000.0) 1;1 3.9357 (0.00) 5 1 test_pfba_benchmark[glpk] 297,212.2780 (>1000.0) 645,211.7730 (>1000.0) 369,122.1608 (>1000.0) 154,349.6131 (>1000.0) 301,381.9470 (>1000.0) 88,536.8141 (>1000.0) 1;1 2.7091 (0.00) 5 1 test_single_gene_deletion_fba_benchmark[glpk] 310,628.3671 (>1000.0) 401,434.9252 (>1000.0) 370,927.8605 (>1000.0) 35,997.0670 (>1000.0) 381,207.0321 (>1000.0) 41,687.1739 (>1000.0) 1;0 2.6959 (0.00) 5 1 test_flux_variability_loopless_benchmark[glpk] 316,031.1629 (>1000.0) 412,091.4759 (>1000.0) 366,256.7740 (>1000.0) 35,005.8066 (>1000.0) 367,889.4250 (>1000.0) 41,499.0736 (>1000.0) 2;0 2.7303 (0.00) 5 1 test_copy_benchmark_large_model[optlang-glpk] 327,442.1978 (>1000.0) 858,966.5010 (>1000.0) 528,546.9635 (>1000.0) 271,361.9430 (>1000.0) 335,981.4549 (>1000.0) 477,958.0499 (>1000.0) 1;0 1.8920 (0.00) 5 1 test_geometric_fba_benchmark[glpk] 387,236.5120 (>1000.0) 403,402.4191 (>1000.0) 391,716.4698 (>1000.0) 6,634.3569 (>1000.0) 389,429.4470 (>1000.0) 5,578.0565 (>1000.0) 1;1 2.5529 (0.00) 5 1 test_flux_variability_benchmark[glpk] 461,867.2042 (>1000.0) 463,123.0528 (>1000.0) 462,292.4308 (>1000.0) 508.6199 (>1000.0) 462,092.2450 (>1000.0) 654.1951 (>1000.0) 1;0 2.1631 (0.00) 5 1 test_double_reaction_deletion_benchmark 1,032,704.3261 (>1000.0) 1,701,265.8920 (>1000.0) 1,416,021.3881 (>1000.0) 277,961.5759 (>1000.0) 1,452,011.3692 (>1000.0) 462,476.1679 (>1000.0) 2;0 0.7062 (0.00) 5 1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ==== 516 passed, 27 skipped, 11 xfailed, 5494 warnings in 134.09s (0:02:14) ==== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/.benchmarks creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/exceptions.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/solution.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/group.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/formula.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/metabolite.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/species.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/gene.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/object.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/dictlist.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/singleton.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/configuration.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/yaml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/sbml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/mat.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/dict.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/load.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/modify.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/delete.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/annotations.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/sampling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/optgp.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/core.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/achr.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/model_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/process_pool.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/solver.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/context.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/array.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/dictlist.py to dictlist.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/formula.py to formula.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/group.py to group.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/metabolite.py to metabolite.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/object.py to object.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/reaction.py to reaction.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/singleton.py to singleton.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/solution.py to solution.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/species.py to species.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/configuration.py to configuration.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/gene.py to gene.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/room.py to room.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/load.py to load.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/dict.py to dict.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/json.py to json.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/mat.py to mat.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/sbml.py to sbml.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/yaml.py to yaml.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/delete.py to delete.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/modify.py to modify.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/validate.py to validate.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/annotations.py to annotations.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/achr.py to achr.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/core.py to core.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/optgp.py to optgp.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/sampling.py to sampling.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/summary.py to summary.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/array.py to array.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/context.py to context.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/process_pool.py to process_pool.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/solver.py to solver.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/exceptions.py to exceptions.cpython-313.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra-0.29.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.1' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.1-3_arm64.deb'. dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.1-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.1-3_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.1-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/469395 and its subdirectories I: Current time: Thu Jul 3 15:14:11 -12 2025 I: pbuilder-time-stamp: 1751598851 Fri Jul 4 03:14:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Jul 4 03:14:13 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Jul 4 03:20:57 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Jul 4 03:20:58 UTC 2025 I: python-cobra_0.29.1-3_arm64.changes: Format: 1.8 Date: Thu, 03 Jul 2025 00:26:36 +0200 Source: python-cobra Binary: python-cobra-data python3-cobra Architecture: all arm64 Version: 0.29.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks with Python 3 Changes: python-cobra (0.29.1-3) unstable; urgency=medium . * Team upload. * Patch-out dependency on external python3-importlib-resources. Checksums-Sha1: 0a73ef093d689f2514b35aa4f02a082d365ac9a6 1437140 python-cobra-data_0.29.1-3_all.deb 72607171fe53ffd7c91cbeb5417b5daf8bd1b088 10934 python-cobra_0.29.1-3_arm64.buildinfo 091e38157ec004c2548ab1c1a4c335792df6a759 1119340 python3-cobra_0.29.1-3_arm64.deb Checksums-Sha256: a049320a3c50d0dae722495b4385d1654c7506cebb9d0d9e119aa7e8fca4e13d 1437140 python-cobra-data_0.29.1-3_all.deb 9f53a90886385c39b24717c7120997ba5d710a7e7233055b4f5708374c468464 10934 python-cobra_0.29.1-3_arm64.buildinfo 3475a78fb9eb6c6aed11db4658021bffe34dc05f50246ccb1c9c97f024791b53 1119340 python3-cobra_0.29.1-3_arm64.deb Files: 72d974de48e55e3f1c4174b456e719c2 1437140 python optional python-cobra-data_0.29.1-3_all.deb f554282c3dadf9c2744396a147e901ec 10934 python optional python-cobra_0.29.1-3_arm64.buildinfo 0c3a9ffa89577d44ffe9e4f95a5012c4 1119340 python optional python3-cobra_0.29.1-3_arm64.deb Fri Jul 4 03:20:59 UTC 2025 I: diffoscope 300 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-82129.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JcHweNLA/python-cobra_0.29.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JcHweNLA/python-cobra_0.29.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JcHweNLA/python-cobra_0.29.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JcHweNLA/b1/python-cobra_0.29.1-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JcHweNLA/b2/python-cobra_0.29.1-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 158ms CPU time consumed: 160ms Fri Jul 4 03:21:00 UTC 2025 I: diffoscope 300 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 4 03:21:00 UTC 2025 I: python-cobra from unstable built successfully and reproducibly on arm64. Fri Jul 4 03:21:00 UTC 2025 I: Removing signed python-cobra_0.29.1-3_arm64.buildinfo.asc files: removed './b1/python-cobra_0.29.1-3_arm64.buildinfo.asc' removed './b2/python-cobra_0.29.1-3_arm64.buildinfo.asc'