Mon Feb 24 03:11:36 UTC 2025 I: starting to build spoa/unstable/arm64 on jenkins on '2025-02-24 03:11' Mon Feb 24 03:11:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/80623/console.log Mon Feb 24 03:11:37 UTC 2025 I: Downloading source for unstable/spoa=4.1.4-2 --2025-02-24 03:11:37-- http://deb.debian.org/debian/pool/main/s/spoa/spoa_4.1.4-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2306 (2.3K) [text/prs.lines.tag] Saving to: ‘spoa_4.1.4-2.dsc’ 0K .. 100% 375M=0s 2025-02-24 03:11:37 (375 MB/s) - ‘spoa_4.1.4-2.dsc’ saved [2306/2306] Mon Feb 24 03:11:37 UTC 2025 I: spoa_4.1.4-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spoa Binary: spoa, libspoa7.0.0, libspoa-dev Architecture: any Version: 4.1.4-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/rvaser/spoa Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/spoa Vcs-Git: https://salsa.debian.org/med-team/spoa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev [any-amd64 any-i386] Package-List: libspoa-dev deb libdevel optional arch=any libspoa7.0.0 deb libs optional arch=any spoa deb science optional arch=any Checksums-Sha1: 4238e0d435b3e0df7d0b377d07f71fe463b9f836 47516 spoa_4.1.4.orig.tar.gz b6b267b927d061faad721546907cfc2fe5f8de17 8916 spoa_4.1.4-2.debian.tar.xz Checksums-Sha256: ea696650460b17881595454c2546a05905f2724927dbbf4d71f4bb8a3f6a99cd 47516 spoa_4.1.4.orig.tar.gz 4829ccc110a3b45b65ec89bf781d0b872a3b3e7d05dd0ea6f83138ea9c8b96fe 8916 spoa_4.1.4-2.debian.tar.xz Files: b8eb09427cc97cdf94602ad71828adbf 47516 spoa_4.1.4.orig.tar.gz 4b1c264b2541ae76ad230cedf82d1dbc 8916 spoa_4.1.4-2.debian.tar.xz Dgit: 42af53d79785430a8d68c815f2e48d8786ebc476 debian archive/debian/4.1.4-2 https://git.dgit.debian.org/spoa -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmahXg8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpt0BAAqboi+lvHXH3U2zN6ek60fTDEorTx anmKlDgzk57ZTv+7woccGHJ+43o5q27k7AYLjKiAESK4wWIt3p8z0Vc/B2sKeN/A qKyIyZ8fkfH9CZVQzzZH7BFqRl4SYTBiaoXcatvUYKiu6/nE62NE+EvR2pJUP7I2 UsjVW7I1sJyrZgnYrA30KjMo6y4W70l+CP4oVRJwd2D7HCyNXCXG8o4nl6592rxl dtEpLPhQXzL2MzlrLyefGCEGsASQ513JO5B0yBODmY/ZGrkw0iFwx274fi2Qw8Hp GMOp037AbyCA7KB9vT+OSCNXH5wimvluTKQdRiOne5A3+/urczhbRJ/nJa/TXb5d kCAdV1+j7a+wYBU4PNMpAWy27WCicSUsYjJAqivdFhf963zBnGpnGhbhTKyZI9ri ju59ifnOyXHLobgIXEKQxGMIbKsdYiaKzz/YBKtT2NWWUJGdPRawMW2hBkhy1hNQ w/vkR8jizsrgYsq1G4/uWaQj6deRPVuBOOuY6VSyiWJ8ESfn9TRnZLN7JeLEfKSR LliGsaaSQcdpcYTihEMc8LXq2VUFwOlcR7YKdyZOE6ZMSGRAeACDG79Gdgq/+b7m osLwVT8a/9eIPp+p/8gaGBwAsji09K9A2NQFL9SnX9EliVcuSsB5gFo8K/n9aAmZ /EIBm5jgzqRoVF0= =w30O -----END PGP SIGNATURE----- Mon Feb 24 03:11:37 UTC 2025 I: Checking whether the package is not for us Mon Feb 24 03:11:37 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Mon Feb 24 03:11:37 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Mon Feb 24 03:12:42 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 28 21:34:39 -12 2026 I: pbuilder-time-stamp: 1774776879 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [spoa_4.1.4-2.dsc] I: copying [./spoa_4.1.4.orig.tar.gz] I: copying [./spoa_4.1.4-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-2.dsc: unsupported subcommand dpkg-source: info: extracting spoa in spoa-4.1.4 dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz dpkg-source: info: unpacking spoa_4.1.4-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-ftbfs-gcc-10.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1605241/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='1a4871e765684bfe974d53cfd91a689c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1605241' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vIlYVDDI/pbuilderrc_zf5S --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vIlYVDDI/b1 --logfile b1/build.log spoa_4.1.4-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1605241/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 40.4 MB of archives. After unpacking 164 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 d-shlibs all 0.109 [11.1 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 64 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 66 http://deb.debian.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-2 [467 kB] Fetched 40.4 MB in 1s (30.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.1.4-2_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.1.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/aarch64-linux-gnu/cmake/CpuFeatures cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/aarch64-linux-gnu/cmake/CpuFeatures .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FetchContent.cmake:1953 (message): Calling FetchContent_Populate(simde) is deprecated, call FetchContent_MakeAvailable(simde) instead. Policy CMP0169 can be set to OLD to allow FetchContent_Populate(simde) to be called directly for now, but the ability to call it with declared details will be removed completely in a future version. Call Stack (most recent call first): CMakeLists.txt:53 (FetchContent_Populate) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency simde to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:1978:EVAL:1 (__FetchContent_Populate) /usr/share/cmake-3.31/Modules/FetchContent.cmake:1978 (cmake_language) CMakeLists.txt:53 (FetchContent_Populate) -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY spoa_build_executable -- Build files have been written to: /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_auto_build -O--no-parallel cd obj-aarch64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 7%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 14%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 21%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatcher.cpp [ 28%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 35%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/version.cpp [ 42%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/spoa.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 42%] Built target spoa make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 50%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 57%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 71%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 71%] Built target spoa_static make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 78%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/main.cpp [ 85%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_exe.dir/link.d CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/lib: lib/libspoa.so.7.0.0 -lz make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 85%] Built target spoa_exe make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 92%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/reproducible-path/spoa-4.1.4/test/spoa_test.cpp [100%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/spoa_test.dir/link.d CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/lib lib/libspoa.so.7.0.0 -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [100%] Built target spoa_test make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' `find . -name spoa_test` Running main() from ./googletest/src/gtest_main.cc [==========] Running 22 tests from 2 test suites. [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError [ OK ] SpoaAlignmentTest.TypeError (0 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) [----------] 3 tests from SpoaAlignmentTest (0 ms total) [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear [ OK ] SpoaTest.Clear (149 ms) [ RUN ] SpoaTest.Local [ OK ] SpoaTest.Local (64 ms) [ RUN ] SpoaTest.LocalAffine [ OK ] SpoaTest.LocalAffine (82 ms) [ RUN ] SpoaTest.LocalConvex [ OK ] SpoaTest.LocalConvex (101 ms) [ RUN ] SpoaTest.LocalWithQualities [ OK ] SpoaTest.LocalWithQualities (63 ms) [ RUN ] SpoaTest.LocalAffineWithQualities [ OK ] SpoaTest.LocalAffineWithQualities (81 ms) [ RUN ] SpoaTest.LocalConvexWithQualities [ OK ] SpoaTest.LocalConvexWithQualities (102 ms) [ RUN ] SpoaTest.Global [ OK ] SpoaTest.Global (62 ms) [ RUN ] SpoaTest.GlobalAffine [ OK ] SpoaTest.GlobalAffine (81 ms) [ RUN ] SpoaTest.GlobalConvex [ OK ] SpoaTest.GlobalConvex (101 ms) [ RUN ] SpoaTest.GlobalWithQualities [ OK ] SpoaTest.GlobalWithQualities (63 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities [ OK ] SpoaTest.GlobalAffineWithQualities (81 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities [ OK ] SpoaTest.GlobalConvexWithQualities (101 ms) [ RUN ] SpoaTest.SemiGlobal [ OK ] SpoaTest.SemiGlobal (62 ms) [ RUN ] SpoaTest.SemiGlobalAffine [ OK ] SpoaTest.SemiGlobalAffine (81 ms) [ RUN ] SpoaTest.SemiGlobalConvex [ OK ] SpoaTest.SemiGlobalConvex (103 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities [ OK ] SpoaTest.SemiGlobalWithQualities (62 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities [ OK ] SpoaTest.SemiGlobalAffineWithQualities (82 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities [ OK ] SpoaTest.SemiGlobalConvexWithQualities (101 ms) [----------] 19 tests from SpoaTest (1634 ms total) [----------] Global test environment tear-down [==========] 22 tests from 2 test suites ran. (1635 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel cd obj-aarch64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/spoa-4.1.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/libspoa.so.7.0.0 -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/libspoa.so -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/libspoa_static.a -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/version.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/spoa/spoaTargets.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/spoa/spoaTargets-release.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/spoa/spoaConfig.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/spoa/spoaConfigVersion.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa -- Set non-toolchain portion of runtime path of "/build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --exclude-a \ --movedev debian/tmp/usr/include/spoa usr/include \ --movedev debian/tmp/usr/lib/aarch64-linux-gnu/cmake /usr/lib/aarch64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libspoa7.0.0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/aarch64-linux-gnu PKGDEV=libspoa-dev PKGSHL=libspoa7.0.0 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev//usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/cmake debian/libspoa-dev//usr/lib/aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-2_arm64.deb'. dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-2_arm64.deb'. dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-2_arm64.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-2_arm64.deb'. dpkg-deb: building package 'spoa' in '../spoa_4.1.4-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../spoa_4.1.4-2_arm64.buildinfo dpkg-genchanges --build=binary -O../spoa_4.1.4-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1605241 and its subdirectories I: Current time: Sat Mar 28 21:35:40 -12 2026 I: pbuilder-time-stamp: 1774776940 Mon Feb 24 03:12:42 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Mon Feb 24 03:12:42 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Mon Feb 24 03:13:55 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Mon Feb 24 03:13:56 UTC 2025 I: spoa_4.1.4-2_arm64.changes: Format: 1.8 Date: Wed, 24 Jul 2024 21:59:08 +0200 Source: spoa Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym Architecture: arm64 Version: 4.1.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libspoa-dev - SIMD partial order alignment library (development files) libspoa7.0.0 - SIMD partial order alignment library spoa - SIMD partial order alignment tool Closes: 1075532 Changes: spoa (4.1.4-2) unstable; urgency=medium . * d/libspoa7.0.0.symbols.amd64: mark some compiler symbols as optional. (Closes: #1075532) * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 9ae5652c9b5cc2d92c958d6a115c8691c3c013ae 9528 libspoa-dev_4.1.4-2_arm64.deb d202c21d7f8d262218094c21515df14337d8ed8b 657276 libspoa7.0.0-dbgsym_4.1.4-2_arm64.deb 992ed1b7bf9952cbc179dc056719e3051eb1d849 53100 libspoa7.0.0_4.1.4-2_arm64.deb 6c161315f667c76826046566339daacb13969bb9 245740 spoa-dbgsym_4.1.4-2_arm64.deb 3762d8d66debab9520cdb5fce2cb9f1c0b032678 7173 spoa_4.1.4-2_arm64.buildinfo 407550a33485e43884e0a457e3c9b0bc3db94928 36768 spoa_4.1.4-2_arm64.deb Checksums-Sha256: a21fa44b52554569e621f893efa299fedeb399be1e20ebbc92a4daa4bf577581 9528 libspoa-dev_4.1.4-2_arm64.deb 621f55a06139349737fdd64bf6a3737a762d85ea2027b3539cc3c918ebb41104 657276 libspoa7.0.0-dbgsym_4.1.4-2_arm64.deb aa4e6f431d2b38479bf805c26475fcd3162f8bef3bc747f10509bac8fe18ab8c 53100 libspoa7.0.0_4.1.4-2_arm64.deb cec73b2b5284481ba7f146eeb2ce331c8d3aa967b8ab79ca8cd7e7c03cc9df64 245740 spoa-dbgsym_4.1.4-2_arm64.deb a8ad9c3d7de2f61ce8dd370297d3af262e3a933278f29aac714e3ee5e08a406f 7173 spoa_4.1.4-2_arm64.buildinfo 8f947475b67c3925396a4a5e5fbfef44aeee6b79e48d9a7a6c10907dd2bc69da 36768 spoa_4.1.4-2_arm64.deb Files: 57fa573f15df964cb3938056b9059c9d 9528 libdevel optional libspoa-dev_4.1.4-2_arm64.deb 9ad67684663749dc84bcc19cd5a4dff0 657276 debug optional libspoa7.0.0-dbgsym_4.1.4-2_arm64.deb 5f84de5f3f948a3f185dc409bc5442d2 53100 libs optional libspoa7.0.0_4.1.4-2_arm64.deb 2d0e2f42ac5d581269f4aa2c5ac3f787 245740 debug optional spoa-dbgsym_4.1.4-2_arm64.deb 6744325673ff5d01e057232614178e1e 7173 science optional spoa_4.1.4-2_arm64.buildinfo a4094d4929d0acbc6b53ffe32d2d7c8c 36768 science optional spoa_4.1.4-2_arm64.deb Mon Feb 24 03:13:56 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_6-80623.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vIlYVDDI/spoa_4.1.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vIlYVDDI/spoa_4.1.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vIlYVDDI/spoa_4.1.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vIlYVDDI/b1/spoa_4.1.4-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vIlYVDDI/b2/spoa_4.1.4-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 228ms CPU time consumed: 226ms Mon Feb 24 03:13:57 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Mon Feb 24 03:13:57 UTC 2025 I: spoa from unstable built successfully and reproducibly on arm64. Mon Feb 24 03:13:58 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Feb 24 03:13:58 UTC 2025 I: Submitting 8.0K b1/spoa_4.1.4-2_arm64.buildinfo.asc Mon Feb 24 03:14:00 UTC 2025 I: Submitting 8.0K b2/spoa_4.1.4-2_arm64.buildinfo.asc Mon Feb 24 03:14:03 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Feb 24 03:14:03 UTC 2025 I: Done submitting .buildinfo files. Mon Feb 24 03:14:03 UTC 2025 I: Removing signed spoa_4.1.4-2_arm64.buildinfo.asc files: removed './b1/spoa_4.1.4-2_arm64.buildinfo.asc' removed './b2/spoa_4.1.4-2_arm64.buildinfo.asc'