Sun Dec 1 12:05:56 UTC 2024 I: starting to build edtsurf/unstable/armhf on jenkins on '2024-12-01 12:05'
Sun Dec 1 12:05:56 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_15/10948/console.log
Sun Dec 1 12:05:56 UTC 2024 I: Downloading source for unstable/edtsurf=0.2009-10
--2024-12-01 12:05:56-- http://deb.debian.org/debian/pool/main/e/edtsurf/edtsurf_0.2009-10.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
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Saving to: ‘edtsurf_0.2009-10.dsc’
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2024-12-01 12:05:56 (237 MB/s) - ‘edtsurf_0.2009-10.dsc’ saved [2026/2026]
Sun Dec 1 12:05:57 UTC 2024 I: edtsurf_0.2009-10.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: edtsurf
Binary: edtsurf
Architecture: any
Version: 0.2009-10
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Andreas Tille <tille@debian.org>, Pranav Ballaney <ballaneypranav@gmail.com>
Homepage: https://zhanglab.ccmb.med.umich.edu/EDTSurf/
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/edtsurf
Vcs-Git: https://salsa.debian.org/med-team/edtsurf.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13)
Package-List:
edtsurf deb science optional arch=any
Checksums-Sha1:
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100acdf1684c739328ce1e8d5b9f08c7f2b4b20e 99696 edtsurf_0.2009-10.debian.tar.xz
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6dca4d8a84aa7dcac0d5c012f3554625e3623a397bca41b65119cbaa33d9f53c 99696 edtsurf_0.2009-10.debian.tar.xz
Files:
ed09afbe1a3673aaa8095bfdd69454a2 38539 edtsurf_0.2009.orig.tar.gz
1daf6b5792c18b2a8e895bddc5176969 99696 edtsurf_0.2009-10.debian.tar.xz
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Sun Dec 1 12:05:57 UTC 2024 I: Checking whether the package is not for us
Sun Dec 1 12:05:57 UTC 2024 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net.
Sun Dec 1 12:05:57 UTC 2024 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net.
Sun Dec 1 12:07:56 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Dec 1 00:06:04 -12 2024
I: pbuilder-time-stamp: 1733054764
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [edtsurf_0.2009-10.dsc]
I: copying [./edtsurf_0.2009.orig.tar.gz]
I: copying [./edtsurf_0.2009-10.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Jan 28 15:52:17 2021
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./edtsurf_0.2009-10.dsc: no acceptable signature found
dpkg-source: info: extracting edtsurf in edtsurf-0.2009
dpkg-source: info: unpacking edtsurf_0.2009.orig.tar.gz
dpkg-source: info: unpacking edtsurf_0.2009-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying CFLAGS_missing_in_Makefile.patch
dpkg-source: info: applying fix-use-of-unsigned-char.patch
dpkg-source: info: applying fix_return_values.patch
dpkg-source: info: applying cross.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/29142/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='af20b73939ef438f806ec1c97e0f47a2'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='29142'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OoPTQmPe/pbuilderrc_ltdq --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OoPTQmPe/b1 --logfile b1/build.log edtsurf_0.2009-10.dsc'
SUDO_GID='113'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt64b 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/29142/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19684 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
Need to get 19.1 MB of archives. After unpacking 70.3 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB]
Get: 4 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB]
Get: 7 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB]
Get: 8 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB]
Get: 9 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 10 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 11 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB]
Get: 12 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB]
Get: 16 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB]
Get: 17 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB]
Get: 18 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 21 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 22 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 23 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 24 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB]
Get: 25 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB]
Get: 26 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB]
Get: 27 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 28 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 29 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB]
Fetched 19.1 MB in 0s (38.2 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 10%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19684 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:armhf.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_armhf.deb ...
Unpacking libmagic1t64:armhf (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3+b1_armhf.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.22.5-2_armhf.deb ...
Unpacking gettext-base (0.22.5-2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-5_armhf.deb ...
Unpacking groff-base (1.23.0-5) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.2-11_armhf.deb ...
Unpacking bsdextrautils (2.40.2-11) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ...
Unpacking autopoint (0.22.5-2) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ...
Unpacking libdebhelper-perl (13.20) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-8_all.deb ...
Unpacking libtool (2.4.7-8) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:armhf.
Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ...
Unpacking libelf1t64:armhf (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ...
Unpacking dwz (0.15-1+b2) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../23-libicu72_72.1-5+b1_armhf.deb ...
Unpacking libicu72:armhf (72.1-5+b1) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ...
Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../25-gettext_0.22.5-2_armhf.deb ...
Unpacking gettext (0.22.5-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
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Preparing to unpack .../28-debhelper_13.20_all.deb ...
Unpacking debhelper (13.20) ...
Setting up libpipeline1:armhf (1.5.8-1) ...
Setting up libicu72:armhf (72.1-5+b1) ...
Setting up bsdextrautils (2.40.2-11) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.20) ...
Setting up libmagic1t64:armhf (1:5.45-3+b1) ...
Setting up gettext-base (0.22.5-2) ...
Setting up m4 (1.4.19-4) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:armhf (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.22.5-2) ...
Setting up autoconf (2.72-3) ...
Setting up dwz (0.15-1+b2) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:armhf (0.0.8-1+b2) ...
Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up gettext (0.22.5-2) ...
Setting up libtool (2.4.7-8) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-5) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.20) ...
Processing triggers for libc-bin (2.40-4) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/edtsurf-0.2009/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../edtsurf_0.2009-10_source.changes
dpkg-buildpackage: info: source package edtsurf
dpkg-buildpackage: info: source version 0.2009-10
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009'
dh_clean
rm -f EDTSurf
make[1]: Leaving directory '/build/reproducible-path/edtsurf-0.2009'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j3 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/edtsurf-0.2009'
g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ParsePDB.cpp -o ParsePDB.o
g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ProteinSurface.cpp -o ProteinSurface.o
g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/edtsurf-0.2009=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c EDTSurf.cpp -o EDTSurf.o
ParsePDB.cpp: In member function 'bool ParsePDB::loadpdb(char*)':
ParsePDB.cpp:1462:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1462 | fgets(oneline,255,filein);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
ParsePDB.cpp: In member function 'void ParsePDB::splitpdb()':
ParsePDB.cpp:1524:55: warning: '%d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=]
1524 | sprintf(tmpn,"%d",i);
| ^~
ParsePDB.cpp:1524:54: note: directive argument in the range [10, 2147483647]
1524 | sprintf(tmpn,"%d",i);
| ^~~~
In file included from /usr/include/stdio.h:970,
from CommonPara.h:10,
from ParsePDB.cpp:12:
In function 'int sprintf(char*, const char*, ...)',
inlined from 'void ParsePDB::splitpdb()' at ParsePDB.cpp:1524:13:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 11 bytes into a destination of size 3
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -Wl,-z,relro -Wl,-z,now ParsePDB.o ProteinSurface.o EDTSurf.o -o EDTSurf
rm *.o
make[1]: Leaving directory '/build/reproducible-path/edtsurf-0.2009'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/edtsurf/
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'edtsurf' in '../edtsurf_0.2009-10_armhf.deb'.
dpkg-deb: building package 'edtsurf-dbgsym' in '../edtsurf-dbgsym_0.2009-10_armhf.deb'.
dpkg-genbuildinfo --build=binary -O../edtsurf_0.2009-10_armhf.buildinfo
dpkg-genchanges --build=binary -O../edtsurf_0.2009-10_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/29142 and its subdirectories
I: Current time: Sun Dec 1 00:07:51 -12 2024
I: pbuilder-time-stamp: 1733054871
Sun Dec 1 12:07:59 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32z-armhf-rb.debian.net.
Sun Dec 1 12:07:59 UTC 2024 I: Preparing to do remote build '2' on virt32z-armhf-rb.debian.net.
Sun Dec 1 12:10:06 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net.
Sun Dec 1 12:10:09 UTC 2024 I: edtsurf_0.2009-10_armhf.changes:
Format: 1.8
Date: Thu, 28 Jan 2021 16:50:25 +0100
Source: edtsurf
Binary: edtsurf edtsurf-dbgsym
Architecture: armhf
Version: 0.2009-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
edtsurf - triangulated mesh surfaces for protein structures
Closes: 980441
Changes:
edtsurf (0.2009-10) unstable; urgency=medium
.
* Team upload.
* debian/rules: for i386 compile with -ffloat-store. Closes: #980441
* debian/test/run-unit-test: run all tests on i386
* Standards-Version: 4.5.1 (routine-update)
Checksums-Sha1:
d2c7dec207b3e19b9869e41c96dcc76ac5453756 98408 edtsurf-dbgsym_0.2009-10_armhf.deb
40f73338cf376a0874fee3e65593af2d4011f6d6 4868 edtsurf_0.2009-10_armhf.buildinfo
a275c70d41f4ffc1ceb52a54a29b8eacee70cbe1 148124 edtsurf_0.2009-10_armhf.deb
Checksums-Sha256:
fc489626d04087d6dac8645cd02913c015e0f4d50b0041b7e87d775cfbc4d53e 98408 edtsurf-dbgsym_0.2009-10_armhf.deb
467bbe4927499e44f34d792dc460f2be490318010795bbb0ab462e2a1ad11a26 4868 edtsurf_0.2009-10_armhf.buildinfo
e637e5679f9ae74e64d59d308dc381ea05378a6ba0e8bf3f1c290c3e06513db9 148124 edtsurf_0.2009-10_armhf.deb
Files:
05b102fcff88a370d8dbbb208d1e8947 98408 debug optional edtsurf-dbgsym_0.2009-10_armhf.deb
018055139c8cbe48725b50202591636e 4868 science optional edtsurf_0.2009-10_armhf.buildinfo
f140c3e6045969403c3299fcc78dd5a3 148124 science optional edtsurf_0.2009-10_armhf.deb
Sun Dec 1 12:10:10 UTC 2024 I: diffoscope 283 will be used to compare the two builds:
Running as unit: rb-diffoscope-armhf_15-10948.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.OoPTQmPe/edtsurf_0.2009-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.OoPTQmPe/edtsurf_0.2009-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.OoPTQmPe/edtsurf_0.2009-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.OoPTQmPe/b1/edtsurf_0.2009-10_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.OoPTQmPe/b2/edtsurf_0.2009-10_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.374s)
0.374s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.018s)
0.018s 12 calls diffoscope.comparators.binary.FilesystemFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 683ms
CPU time consumed: 681ms
Sun Dec 1 12:10:11 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists.
Sun Dec 1 12:10:11 UTC 2024 I: edtsurf from unstable built successfully and reproducibly on armhf.
Sun Dec 1 12:10:13 UTC 2024 I: Submitting .buildinfo files to external archives:
Sun Dec 1 12:10:13 UTC 2024 I: Submitting 8.0K b1/edtsurf_0.2009-10_armhf.buildinfo.asc
Sun Dec 1 12:10:13 UTC 2024 I: Submitting 8.0K b2/edtsurf_0.2009-10_armhf.buildinfo.asc
Sun Dec 1 12:10:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sun Dec 1 12:10:14 UTC 2024 I: Done submitting .buildinfo files.
Sun Dec 1 12:10:14 UTC 2024 I: Removing signed edtsurf_0.2009-10_armhf.buildinfo.asc files:
removed './b1/edtsurf_0.2009-10_armhf.buildinfo.asc'
removed './b2/edtsurf_0.2009-10_armhf.buildinfo.asc'