Mon Apr 14 21:36:51 UTC 2025 I: starting to build fastdnaml/unstable/armhf on jenkins on '2025-04-14 21:36' Mon Apr 14 21:36:51 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_1/9265/console.log Mon Apr 14 21:36:51 UTC 2025 I: Downloading source for unstable/fastdnaml=1.2.2-18 --2025-04-14 21:36:52-- http://deb.debian.org/debian/pool/main/f/fastdnaml/fastdnaml_1.2.2-18.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2192 (2.1K) [text/prs.lines.tag] Saving to: ‘fastdnaml_1.2.2-18.dsc’ 0K .. 100% 351M=0s 2025-04-14 21:36:52 (351 MB/s) - ‘fastdnaml_1.2.2-18.dsc’ saved [2192/2192] Mon Apr 14 21:36:52 UTC 2025 I: fastdnaml_1.2.2-18.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fastdnaml Binary: fastdnaml Architecture: any Version: 1.2.2-18 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Charles Plessy , Étienne Mollier Homepage: https://www.life.illinois.edu/gary/programs/fastDNAml.html Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/fastdnaml Vcs-Git: https://salsa.debian.org/med-team/fastdnaml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: fastdnaml deb science optional arch=any Checksums-Sha1: 78197cbd760163f65085ac80c36d4286a1f29e34 70005 fastdnaml_1.2.2.orig.tar.gz b4e0d40bef01becd3c44a74f38527c955a593a7c 9808 fastdnaml_1.2.2-18.debian.tar.xz Checksums-Sha256: 34690ec9a8e2fe1d86bea4a7cb10f7bc47e5e4c30719e1c9451210df4f160180 70005 fastdnaml_1.2.2.orig.tar.gz c075531de338aba42de6193d73e6b8d776f6d01b66bb1d7a55685f952f15d800 9808 fastdnaml_1.2.2-18.debian.tar.xz Files: dd9c737e0f433879500391d0e229f763 70005 fastdnaml_1.2.2.orig.tar.gz da574961503f9ba141553a93fb25c47b 9808 fastdnaml_1.2.2-18.debian.tar.xz Dgit: 0915a53d1881c4fd2a080d9ec0efca6f87e5b3db debian archive/debian/1.2.2-18 https://git.dgit.debian.org/fastdnaml -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmfEKSsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrMhg/+IoVMLp64KlbXd+wrOpCwEXh+LE+h FQprgBOrCQA9fSzDcLe4p5pxaMHQ9U3DKT0O5B3inFzPVbtBzKOVZcUn3w7j1Jqx +rXhbSncXyn4fiPxJxlMOGBlfnWw4x2Gsg+j6eEvIIAH06GwnLALfkGodJl/fMvv z8ICWlV2VtIkqVucd6naG5KxQJQf/8DjDHMsqoF060BWXjSdtGukhO5OCygfwsgW ghnkKlvVNa26Sr9df8lg9DGifl867RqTZFQfio08YuNH5JTVYonWF9KFNAb4ns6u Z9UlMTAnKL92i9H0eSKLv9pRVDG/rRRi7COe7opc+JD8+3bu837Uqji2NEyVbaEX Qbx4BqfYB9EX0ImON1rrBfuw+IpjKi6KBgrRLxBu/HwcLebTUAm+PcBZQB8UIE6U jt5DGrOcnb3rSdlbRKz6vd/qb6Oxt++QNjq5Uze/0yoRwKIOgaYTTO+FLrivf85T FLdbvWIIdTlpfIa9dXSEXqh0WUKQe+QGSMq5lV/w7vtPSkvIyIQtLCxOern3o8rY IX1sDnLzi9TrBJ5SiYU+JQ5sBd214lEuxQshAaeS4IM+O5nTbXRvCw+dusb3Px9z 0ypEKYicdZWYHcw/vsW5r6u1zlTOdeACaNFceG6fTInWcQjEbPYZ93O0kNamlPBg 8/+VNIdqqNXYjGA= =p7r5 -----END PGP SIGNATURE----- Mon Apr 14 21:36:52 UTC 2025 I: Checking whether the package is not for us Mon Apr 14 21:36:52 UTC 2025 I: Starting 1st build on remote node cbxi4a-armhf-rb.debian.net. Mon Apr 14 21:36:52 UTC 2025 I: Preparing to do remote build '1' on cbxi4a-armhf-rb.debian.net. Mon Apr 14 21:42:43 UTC 2025 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 14 09:37:04 -12 2025 I: pbuilder-time-stamp: 1744666625 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastdnaml_1.2.2-18.dsc] I: copying [./fastdnaml_1.2.2.orig.tar.gz] I: copying [./fastdnaml_1.2.2-18.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./fastdnaml_1.2.2-18.dsc: unsupported subcommand dpkg-source: info: extracting fastdnaml in fastdnaml-1.2.2 dpkg-source: info: unpacking fastdnaml_1.2.2.orig.tar.gz dpkg-source: info: unpacking fastdnaml_1.2.2-18.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying scripts.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying fixup-implicit-function-declaration.patch dpkg-source: info: applying gcc-14.patch dpkg-source: info: applying gcc-15.patch dpkg-source: info: applying fortify.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25274/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='e482c67faaec4aa896f23cc01ed88281' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25274' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5x8wgqpc/pbuilderrc_OTM4 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5x8wgqpc/b1 --logfile b1/build.log fastdnaml_1.2.2-18.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4a 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25274/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19566 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.7 MB of archives. After unpacking 41.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.46-5 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.46-5 [42.8 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.23.1-1 [238 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-7 [1095 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.41-4 [86.5 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-7 [272 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-2 [441 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.4 [604 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.23.1-1 [1560 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf debhelper all 13.24.2 [919 kB] Fetched 10.7 MB in 1s (8880 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19566 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_armhf.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_armhf.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_armhf.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_armhf.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_armhf.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-7_armhf.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../21-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libunistring5:armhf. Preparing to unpack .../23-libunistring5_1.3-2_armhf.deb ... Unpacking libunistring5:armhf (1.3-2) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_armhf.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:armhf (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:armhf (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fastdnaml-1.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastdnaml_1.2.2-18_source.changes dpkg-buildpackage: info: source package fastdnaml dpkg-buildpackage: info: source version 1.2.2-18 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' (cd source; rm -f *.o fastDNAml) rm -rf tests rm -f checkpoint.* make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' dh_clean rm -fr source/fastDNAml make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j3 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' cd source && cc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fastdnaml-1.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security fastDNAml.c -o fastDNAml -lm -Wl,-z,relro -Wl,-z,now fastDNAml.c: In function 'processTreeCom': fastDNAml.c:3957:12: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 3957 | (void) fscanf(fp, " p%nhylip_tree(%n", & text_started, & functor_read); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastDNAml.c:3959:14: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 3959 | (void) fscanf(fp, "seudoNewick(%n", & functor_read); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastDNAml.c:3967:12: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 3967 | (void) fscanf(fp, " [%n", & com_open); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastDNAml.c:3985:32: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 3985 | if (functor_read) (void) fscanf(fp, " ,"); /* remove trailing comma */ | ^~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' # do nothing make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/fastdnaml-1.2.2' dh_install cp -a docs/fastDNAml_doc_1.2.txt `pwd`/debian/`dh_listpackages`/usr/share/`dh_listpackages`/fastdnaml_help # the scripts have to be executable thus mentioning these in debian/install is not enough cp -a scripts/* `pwd`/debian/`dh_listpackages`/usr/lib/`dh_listpackages`/bin chmod 755 `pwd`/debian/`dh_listpackages`/usr/lib/`dh_listpackages`/bin/* make[1]: Leaving directory '/build/reproducible-path/fastdnaml-1.2.2' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_installmenu dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastdnaml' in '../fastdnaml_1.2.2-18_armhf.deb'. dpkg-deb: building package 'fastdnaml-dbgsym' in '../fastdnaml-dbgsym_1.2.2-18_armhf.deb'. dpkg-genbuildinfo --build=binary -O../fastdnaml_1.2.2-18_armhf.buildinfo dpkg-genchanges --build=binary -O../fastdnaml_1.2.2-18_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25274 and its subdirectories I: Current time: Mon Apr 14 09:42:38 -12 2025 I: pbuilder-time-stamp: 1744666958 Mon Apr 14 21:42:46 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Mon Apr 14 21:42:46 UTC 2025 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Mon Apr 14 21:43:45 UTC 2025 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Mon Apr 14 21:43:47 UTC 2025 I: fastdnaml_1.2.2-18_armhf.changes: Format: 1.8 Date: Sun, 02 Mar 2025 10:38:27 +0100 Source: fastdnaml Binary: fastdnaml fastdnaml-dbgsym Architecture: armhf Version: 1.2.2-18 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: fastdnaml - Tool for construction of phylogenetic trees of DNA sequences Closes: 1096609 Changes: fastdnaml (1.2.2-18) unstable; urgency=medium . * gcc-15.patch: new: fix build failure with gcc-15. (Closes: #1096609) * d/control: declare compliance to standards version 4.7.2. * hardening.patch: normalise Last-Update timestamp. * fixup-implicit-function-declaration.patch: dep3 header. * fortify.patch: new: fortify binaries hardening. * d/*: identified new upstream source location. * d/watch: update watch file to new upstream location. Checksums-Sha1: 562a57084d95b771f11452f8682c79b0bc2f00d7 78124 fastdnaml-dbgsym_1.2.2-18_armhf.deb d26ec586cd5ddbf47dd54a107c6389ec146d98de 4723 fastdnaml_1.2.2-18_armhf.buildinfo 43502f74b706fd07c5fbdd518e2b25eaafa150bc 54172 fastdnaml_1.2.2-18_armhf.deb Checksums-Sha256: 700c0caa44bf8365bd9eef37b799182fdb7bfec68b27cda24d466d9de36556af 78124 fastdnaml-dbgsym_1.2.2-18_armhf.deb 36d59b500a9b1362edde087940c500b4a65c8555d48145afdd9b4d429edb9c9f 4723 fastdnaml_1.2.2-18_armhf.buildinfo ea43d93d29e97c4a5a3af01f21f2563fc6d604c83c2027d3f1b6d4b00a0abe0c 54172 fastdnaml_1.2.2-18_armhf.deb Files: ac4fed881abff7f9070112cc5f422ccc 78124 debug optional fastdnaml-dbgsym_1.2.2-18_armhf.deb 7713f54c2cd5143a4b3541cefc1ae051 4723 science optional fastdnaml_1.2.2-18_armhf.buildinfo 28af0d4958f03f37de220db5a960a9db 54172 science optional fastdnaml_1.2.2-18_armhf.deb Mon Apr 14 21:43:49 UTC 2025 I: diffoscope 294 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_1-9265.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5x8wgqpc/fastdnaml_1.2.2-18.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5x8wgqpc/fastdnaml_1.2.2-18.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5x8wgqpc/fastdnaml_1.2.2-18.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5x8wgqpc/b1/fastdnaml_1.2.2-18_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.5x8wgqpc/b2/fastdnaml_1.2.2-18_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 241ms CPU time consumed: 240ms Mon Apr 14 21:57:54 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 14 21:57:54 UTC 2025 I: fastdnaml from unstable built successfully and reproducibly on armhf. Mon Apr 14 21:57:56 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Apr 14 21:57:56 UTC 2025 I: Submitting 8.0K b1/fastdnaml_1.2.2-18_armhf.buildinfo.asc Mon Apr 14 21:58:11 UTC 2025 I: Submitting 8.0K b2/fastdnaml_1.2.2-18_armhf.buildinfo.asc Mon Apr 14 21:58:28 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 14 21:58:28 UTC 2025 I: Done submitting .buildinfo files. Mon Apr 14 21:58:28 UTC 2025 I: Removing signed fastdnaml_1.2.2-18_armhf.buildinfo.asc files: removed './b1/fastdnaml_1.2.2-18_armhf.buildinfo.asc' removed './b2/fastdnaml_1.2.2-18_armhf.buildinfo.asc'