Wed Dec 4 17:40:17 UTC 2024 I: starting to build roary/unstable/armhf on jenkins on '2024-12-04 17:39'
Wed Dec 4 17:40:17 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_2/9613/console.log
Wed Dec 4 17:40:17 UTC 2024 I: Downloading source for unstable/roary=3.13.0+dfsg-2
--2024-12-04 17:40:17-- http://deb.debian.org/debian/pool/main/r/roary/roary_3.13.0%2bdfsg-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2507 (2.4K) [text/prs.lines.tag]
Saving to: ‘roary_3.13.0+dfsg-2.dsc’
0K .. 100% 297M=0s
2024-12-04 17:40:17 (297 MB/s) - ‘roary_3.13.0+dfsg-2.dsc’ saved [2507/2507]
Wed Dec 4 17:40:17 UTC 2024 I: roary_3.13.0+dfsg-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: roary
Binary: roary
Architecture: all
Version: 3.13.0+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Homepage: https://sanger-pathogens.github.io/Roary/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/roary
Vcs-Git: https://salsa.debian.org/med-team/roary.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree
Build-Depends-Indep: perl
Package-List:
roary deb science optional arch=all
Checksums-Sha1:
ec41e9813412b1e168328131cabc91ae1ea06162 207348 roary_3.13.0+dfsg.orig.tar.xz
d2845cda817077a90ae16f282ade21b25612ea0f 7308 roary_3.13.0+dfsg-2.debian.tar.xz
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Files:
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d26aa7dcb13361bf384ee6dfd489df10 7308 roary_3.13.0+dfsg-2.debian.tar.xz
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Wed Dec 4 17:40:17 UTC 2024 I: Checking whether the package is not for us
Wed Dec 4 17:40:17 UTC 2024 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net.
Wed Dec 4 17:40:17 UTC 2024 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net.
Wed Dec 4 17:44:47 UTC 2024 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Dec 4 05:40:23 -12 2024
I: pbuilder-time-stamp: 1733334023
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [roary_3.13.0+dfsg-2.dsc]
I: copying [./roary_3.13.0+dfsg.orig.tar.xz]
I: copying [./roary_3.13.0+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Dec 2 17:35:49 2024
gpgv: using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./roary_3.13.0+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting roary in roary-3.13.0+dfsg
dpkg-source: info: unpacking roary_3.13.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking roary_3.13.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rename_R_script.patch
dpkg-source: info: applying use-dz-starter.patch
dpkg-source: info: applying use-debian-perl-path.patch
dpkg-source: info: applying new-bioperl-require.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/25679/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='7a8c2e5d556548b897d2244787fb70cb'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='25679'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qChvf7PL/pbuilderrc_RcHC --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qChvf7PL/b1 --logfile b1/build.log roary_3.13.0+dfsg-2.dsc'
SUDO_GID='113'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt32a 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/25679/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl (>= 1.7.4), libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19685 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-dist-zilla; however:
Package dh-dist-zilla is not installed.
pbuilder-satisfydepends-dummy depends on libdist-zilla-plugin-podweaver-perl; however:
Package libdist-zilla-plugin-podweaver-perl is not installed.
pbuilder-satisfydepends-dummy depends on bioperl (>= 1.7.4); however:
Package bioperl is not installed.
pbuilder-satisfydepends-dummy depends on libarray-utils-perl; however:
Package libarray-utils-perl is not installed.
pbuilder-satisfydepends-dummy depends on libenv-path-perl; however:
Package libenv-path-perl is not installed.
pbuilder-satisfydepends-dummy depends on libexception-class-perl; however:
Package libexception-class-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfile-find-rule-perl; however:
Package libfile-find-rule-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfile-grep-perl; however:
Package libfile-grep-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfile-slurper-perl; however:
Package libfile-slurper-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfile-which-perl; however:
Package libfile-which-perl is not installed.
pbuilder-satisfydepends-dummy depends on libfindbin-libs-perl; however:
Package libfindbin-libs-perl is not installed.
pbuilder-satisfydepends-dummy depends on libgraph-perl; however:
Package libgraph-perl is not installed.
pbuilder-satisfydepends-dummy depends on libgraph-readwrite-perl; however:
Package libgraph-readwrite-perl is not installed.
pbuilder-satisfydepends-dummy depends on liblog-log4perl-perl; however:
Package liblog-log4perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libmoose-perl; however:
Package libmoose-perl is not installed.
pbuilder-satisfydepends-dummy depends on libperlio-utf8-strict-perl; however:
Package libperlio-utf8-strict-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-most-perl; however:
Package libtest-most-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-file-perl; however:
Package libtest-file-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-files-perl; however:
Package libtest-files-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtest-output-perl; however:
Package libtest-output-perl is not installed.
pbuilder-satisfydepends-dummy depends on libtext-csv-perl; however:
Package libtext-csv-perl is not installed.
pbuilder-satisfydepends-dummy depends on bedtools; however:
Package bedtools is not installed.
pbuilder-satisfydepends-dummy depends on cd-hit; however:
Package cd-hit is not installed.
pbuilder-satisfydepends-dummy depends on ncbi-blast+; however:
Package ncbi-blast+ is not installed.
pbuilder-satisfydepends-dummy depends on mcl; however:
Package mcl is not installed.
pbuilder-satisfydepends-dummy depends on parallel; however:
Package parallel is not installed.
pbuilder-satisfydepends-dummy depends on prank; however:
Package prank is not installed.
pbuilder-satisfydepends-dummy depends on r-base-core; however:
Package r-base-core is not installed.
pbuilder-satisfydepends-dummy depends on mafft; however:
Package mafft is not installed.
pbuilder-satisfydepends-dummy depends on fasttree; however:
Package fasttree is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bioperl{a} bsdextrautils{a} ca-certificates{a} cd-hit{a} debhelper{a} dh-autoreconf{a} dh-dist-zilla{a} dh-strip-nondeterminism{a} dwz{a} fasttree{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-c3-perl{a} libalgorithm-diff-perl{a} libaliased-perl{a} libapp-cmd-perl{a} libarchive-zip-perl{a} libarray-utils-perl{a} libautobox-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libbio-perl-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcapture-tiny-perl{a} libcarp-clan-perl{a} libclass-c3-perl{a} libclass-data-inheritable-perl{a} libclass-inspector-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclass-method-modifiers-perl{a} libclass-singleton-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libconfig-ini-perl{a} libconfig-mvp-perl{a} libconfig-mvp-reader-ini-perl{a} libconst-fast-perl{a} libcpan-uploader-perl{a} libcpanel-json-xs-perl{a} libcurl4t64{a} libdata-compare-perl{a} libdata-optlist-perl{a} libdata-section-perl{a} libdata-stag-perl{a} libdatetime-locale-perl{a} libdatetime-perl{a} libdatetime-timezone-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdist-zilla-perl{a} libdist-zilla-plugin-podweaver-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libenv-path-perl{a} libeval-closure-perl{a} libexception-class-perl{a} libexpat1{a} libexporter-tiny-perl{a} libfile-chdir-perl{a} libfile-copy-recursive-perl{a} libfile-find-rule-perl{a} libfile-grep-perl{a} libfile-listing-perl{a} libfile-pushd-perl{a} libfile-sharedir-install-perl{a} libfile-sharedir-perl{a} libfile-slurper-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfindbin-libs-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgetopt-long-descriptive-perl{a} libgfortran5{a} libglib2.0-0t64{a} libgraph-perl{a} libgraph-readwrite-perl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhash-merge-simple-perl{a} libheap-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu72{a} libimport-into-perl{a} libio-all-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libio-stringy-perl{a} libio-tiecombine-perl{a} libjbig0{a} libjpeg62-turbo{a} libjson-maybexs-perl{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblist-moreutils-perl{a} liblist-moreutils-xs-perl{a} liblmdb0{a} liblog-dispatch-array-perl{a} liblog-dispatch-perl{a} liblog-dispatchouli-perl{a} liblog-log4perl-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libmixin-linewise-perl{a} libmodule-implementation-perl{a} libmodule-path-perl{a} libmodule-pluggable-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoo-perl{a} libmoose-autobox-perl{a} libmoose-perl{a} libmoosex-lazyrequire-perl{a} libmoosex-oneargnew-perl{a} libmoosex-role-parameterized-perl{a} libmoosex-setonce-perl{a} libmoosex-types-perl{a} libmoosex-types-perl-perl{a} libmro-compat-perl{a} libnamespace-autoclean-perl{a} libnamespace-clean-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnsl2{a} libnumber-compare-perl{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpadwalker-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libparams-validate-perl{a} libparams-validationcompiler-perl{a} libparse-yapp-perl{a} libpath-tiny-perl{a} libperl-prereqscanner-perl{a} libperl-version-perl{a} libperlio-utf8-strict-perl{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpod-elemental-perl{a} libpod-elemental-perlmunger-perl{a} libpod-eventual-perl{a} libpod-weaver-perl{a} libppi-perl{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librole-hasmessage-perl{a} librole-identifiable-perl{a} librole-tiny-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscope-guard-perl{a} libsensors-config{a} libsensors5{a} libset-object-perl{a} libsharpyuv0{a} libsm6{a} libsoftware-license-perl{a} libspecio-perl{a} libspiffy-perl{a} libssh2-1t64{a} libstring-errf-perl{a} libstring-flogger-perl{a} libstring-formatter-perl{a} libstring-rewriteprefix-perl{a} libstring-truncate-perl{a} libsub-exporter-formethods-perl{a} libsub-exporter-globexporter-perl{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-quote-perl{a} libsub-uplevel-perl{a} libsyntax-keyword-junction-perl{a} libtask-weaken-perl{a} libtcl8.6{a} libterm-encoding-perl{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-file-perl{a} libtest-files-perl{a} libtest-most-perl{a} libtest-output-perl{a} libtest-warn-perl{a} libtest2-suite-perl{a} libtext-csv-perl{a} libtext-diff-perl{a} libtext-glob-perl{a} libtext-template-perl{a} libthai-data{a} libthai0{a} libthrowable-perl{a} libtie-ixhash-perl{a} libtiff6{a} libtimedate-perl{a} libtingea0{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libtype-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml-parser-perl{a} libxml-writer-perl{a} libxml2{a} libxrender1{a} libxss1{a} libxstring-perl{a} libxt6t64{a} libyaml-tiny-perl{a} m4{a} mafft{a} man-db{a} mcl{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} openssl{a} parallel{a} perl-openssl-defaults{a} po-debconf{a} prank{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} r-base-core{a} readline-common{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a}
The following packages are RECOMMENDED but will NOT be installed:
bash-completion bcron bioperl-run cpanminus cron cronie curl devscripts krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarchive-tar-wrapper-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclass-c3-xs-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libgd-perl libglib2.0-data libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libipc-shareable-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libmailtools-perl libmime-lite-perl libmldbm-perl libnet-dbus-perl libpod-coverage-trustpod-perl libpostscript-perl libref-util-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libterm-readline-gnu-perl libterm-ui-perl libtest-cpan-meta-perl libtest-pod-coverage-perl libtest-pod-perl libtext-csv-xs-perl libtype-tiny-xs-perl libunicode-utf8-perl libx11-protocol-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libyaml-perl linux-sysctl-defaults lynx perl-doc perl-tk psmisc publicsuffix r-base-dev r-doc-html r-recommended ruby shared-mime-info systemd systemd-cron wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 315 newly installed, 0 to remove and 0 not upgraded.
Need to get 109 MB of archives. After unpacking 339 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-3 [800 kB]
Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB]
Get: 3 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-3 [1808 kB]
Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.7-1 [26.8 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-4 [256 kB]
Get: 8 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB]
Get: 9 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.2~rc1-2 [22.9 kB]
Get: 10 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB]
Get: 11 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B]
Get: 12 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB]
Get: 13 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB]
Get: 14 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB]
Get: 16 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB]
Get: 17 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB]
Get: 18 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB]
Get: 19 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1819 kB]
Get: 20 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-3 [671 kB]
Get: 21 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.7-1 [9712 B]
Get: 22 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.7-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB]
Get: 24 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-6 [864 kB]
Get: 25 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 26 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.3.2-2 [1348 kB]
Get: 27 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20240203 [158 kB]
Get: 28 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB]
Get: 29 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB]
Get: 30 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB]
Get: 31 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB]
Get: 32 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB]
Get: 33 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB]
Get: 34 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB]
Get: 35 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 36 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 37 http://deb.debian.org/debian unstable/main armhf ucf all 3.0044 [45.2 kB]
Get: 38 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB]
Get: 39 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB]
Get: 40 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 41 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 42 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB]
Get: 43 http://deb.debian.org/debian unstable/main armhf bedtools armhf 2.31.1+dfsg-2 [578 kB]
Get: 44 http://deb.debian.org/debian unstable/main armhf libio-string-perl all 1.08-4 [12.1 kB]
Get: 45 http://deb.debian.org/debian unstable/main armhf libdata-stag-perl all 0.14-3 [448 kB]
Get: 46 http://deb.debian.org/debian unstable/main armhf libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 47 http://deb.debian.org/debian unstable/main armhf libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get: 48 http://deb.debian.org/debian unstable/main armhf libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get: 49 http://deb.debian.org/debian unstable/main armhf libexception-class-perl all 1.45-1 [34.6 kB]
Get: 50 http://deb.debian.org/debian unstable/main armhf libtest-deep-perl all 1.204-1 [52.9 kB]
Get: 51 http://deb.debian.org/debian unstable/main armhf libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get: 52 http://deb.debian.org/debian unstable/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get: 53 http://deb.debian.org/debian unstable/main armhf libtext-diff-perl all 1.45-2 [27.2 kB]
Get: 54 http://deb.debian.org/debian unstable/main armhf libtest-differences-perl all 0.71-1 [17.9 kB]
Get: 55 http://deb.debian.org/debian unstable/main armhf libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 56 http://deb.debian.org/debian unstable/main armhf libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 57 http://deb.debian.org/debian unstable/main armhf libtest-warn-perl all 0.37-2 [14.5 kB]
Get: 58 http://deb.debian.org/debian unstable/main armhf libtest-most-perl all 0.38-1 [25.1 kB]
Get: 59 http://deb.debian.org/debian unstable/main armhf bioperl all 1.7.8-1 [246 kB]
Get: 60 http://deb.debian.org/debian unstable/main armhf cd-hit armhf 4.8.1-4 [499 kB]
Get: 61 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB]
Get: 62 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB]
Get: 63 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 64 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 65 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 66 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 67 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 68 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 69 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB]
Get: 70 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB]
Get: 71 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB]
Get: 72 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 73 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 74 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB]
Get: 75 http://deb.debian.org/debian unstable/main armhf libparams-util-perl armhf 1.102-3+b1 [23.2 kB]
Get: 76 http://deb.debian.org/debian unstable/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get: 77 http://deb.debian.org/debian unstable/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get: 78 http://deb.debian.org/debian unstable/main armhf libb-hooks-op-check-perl armhf 0.22-3+b2 [10.3 kB]
Get: 79 http://deb.debian.org/debian unstable/main armhf libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get: 80 http://deb.debian.org/debian unstable/main armhf libdevel-callchecker-perl armhf 0.009-1+b1 [16.0 kB]
Get: 81 http://deb.debian.org/debian unstable/main armhf libparams-classify-perl armhf 0.015-2+b4 [21.2 kB]
Get: 82 http://deb.debian.org/debian unstable/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 83 http://deb.debian.org/debian unstable/main armhf libtry-tiny-perl all 0.32-1 [22.9 kB]
Get: 84 http://deb.debian.org/debian unstable/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get: 85 http://deb.debian.org/debian unstable/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get: 86 http://deb.debian.org/debian unstable/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get: 87 http://deb.debian.org/debian unstable/main armhf libio-stringy-perl all 2.113-2 [48.3 kB]
Get: 88 http://deb.debian.org/debian unstable/main armhf libparams-validate-perl armhf 1.31-2+b3 [62.0 kB]
Get: 89 http://deb.debian.org/debian unstable/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get: 90 http://deb.debian.org/debian unstable/main armhf libgetopt-long-descriptive-perl all 0.115-1 [27.6 kB]
Get: 91 http://deb.debian.org/debian unstable/main armhf libio-tiecombine-perl all 1.005-3 [10.8 kB]
Get: 92 http://deb.debian.org/debian unstable/main armhf libmodule-pluggable-perl all 5.2-5 [23.0 kB]
Get: 93 http://deb.debian.org/debian unstable/main armhf libstring-rewriteprefix-perl all 0.009-1 [7140 B]
Get: 94 http://deb.debian.org/debian unstable/main armhf libapp-cmd-perl all 0.336-1 [65.8 kB]
Get: 95 http://deb.debian.org/debian unstable/main armhf libscope-guard-perl all 0.21-2 [8212 B]
Get: 96 http://deb.debian.org/debian unstable/main armhf libautobox-perl armhf 3.0.2-1+b1 [32.2 kB]
Get: 97 http://deb.debian.org/debian unstable/main armhf libperlio-utf8-strict-perl armhf 0.010-1+b3 [10.9 kB]
Get: 98 http://deb.debian.org/debian unstable/main armhf libmixin-linewise-perl all 0.111-1 [14.4 kB]
Get: 99 http://deb.debian.org/debian unstable/main armhf libconfig-ini-perl all 1:0.029-1 [23.7 kB]
Get: 100 http://deb.debian.org/debian unstable/main armhf libclass-load-xs-perl armhf 0.10-2+b4 [13.8 kB]
Get: 101 http://deb.debian.org/debian unstable/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get: 102 http://deb.debian.org/debian unstable/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get: 103 http://deb.debian.org/debian unstable/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get: 104 http://deb.debian.org/debian unstable/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get: 105 http://deb.debian.org/debian unstable/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get: 106 http://deb.debian.org/debian unstable/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get: 107 http://deb.debian.org/debian unstable/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get: 108 http://deb.debian.org/debian unstable/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get: 109 http://deb.debian.org/debian unstable/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get: 110 http://deb.debian.org/debian unstable/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get: 111 http://deb.debian.org/debian unstable/main armhf libpackage-stash-xs-perl armhf 0.30-1+b4 [19.2 kB]
Get: 112 http://deb.debian.org/debian unstable/main armhf libmoose-perl armhf 2.2207-1+b2 [765 kB]
Get: 113 http://deb.debian.org/debian unstable/main armhf libvariable-magic-perl armhf 0.64-1+b1 [42.5 kB]
Get: 114 http://deb.debian.org/debian unstable/main armhf libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get: 115 http://deb.debian.org/debian unstable/main armhf libsub-identify-perl armhf 0.14-3+b3 [10.7 kB]
Get: 116 http://deb.debian.org/debian unstable/main armhf libsub-name-perl armhf 0.27-1+b3 [12.0 kB]
Get: 117 http://deb.debian.org/debian unstable/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get: 118 http://deb.debian.org/debian unstable/main armhf libnamespace-autoclean-perl all 0.31-1 [13.8 kB]
Get: 119 http://deb.debian.org/debian unstable/main armhf libmoosex-role-parameterized-perl all 1.11-2 [41.9 kB]
Get: 120 http://deb.debian.org/debian unstable/main armhf libmoosex-oneargnew-perl all 0.007-1 [8180 B]
Get: 121 http://deb.debian.org/debian unstable/main armhf libcpanel-json-xs-perl armhf 4.38-1+b1 [127 kB]
Get: 122 http://deb.debian.org/debian unstable/main armhf libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get: 123 http://deb.debian.org/debian unstable/main armhf libstring-formatter-perl all 1.235-1 [22.1 kB]
Get: 124 http://deb.debian.org/debian unstable/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 125 http://deb.debian.org/debian unstable/main armhf libstring-errf-perl all 0.009-1 [12.9 kB]
Get: 126 http://deb.debian.org/debian unstable/main armhf librole-hasmessage-perl all 0.007-1 [9112 B]
Get: 127 http://deb.debian.org/debian unstable/main armhf librole-identifiable-perl all 0.009-1 [10.4 kB]
Get: 128 http://deb.debian.org/debian unstable/main armhf libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get: 129 http://deb.debian.org/debian unstable/main armhf libclass-xsaccessor-perl armhf 1.19-4+b4 [35.1 kB]
Get: 130 http://deb.debian.org/debian unstable/main armhf libimport-into-perl all 1.002005-2 [11.3 kB]
Get: 131 http://deb.debian.org/debian unstable/main armhf librole-tiny-perl all 2.002004-1 [21.4 kB]
Get: 132 http://deb.debian.org/debian unstable/main armhf libsub-quote-perl all 2.006008-1 [21.8 kB]
Get: 133 http://deb.debian.org/debian unstable/main armhf libmoo-perl all 2.005005-1 [58.0 kB]
Get: 134 http://deb.debian.org/debian unstable/main armhf libthrowable-perl all 1.001-2 [15.7 kB]
Get: 135 http://deb.debian.org/debian unstable/main armhf libtie-ixhash-perl all 1.23-4 [11.7 kB]
Get: 136 http://deb.debian.org/debian unstable/main armhf libconfig-mvp-perl all 2.200013-1 [47.1 kB]
Get: 137 http://deb.debian.org/debian unstable/main armhf libconfig-mvp-reader-ini-perl all 2.101465-1 [6900 B]
Get: 138 http://deb.debian.org/debian unstable/main armhf perl-openssl-defaults armhf 7+b2 [6708 B]
Get: 139 http://deb.debian.org/debian unstable/main armhf libnet-ssleay-perl armhf 1.94-2 [319 kB]
Get: 140 http://deb.debian.org/debian unstable/main armhf libio-socket-ssl-perl all 2.089-1 [223 kB]
Get: 141 http://deb.debian.org/debian unstable/main armhf liburi-perl all 5.30-1 [105 kB]
Get: 142 http://deb.debian.org/debian unstable/main armhf libnet-http-perl all 6.23-1 [23.9 kB]
Get: 143 http://deb.debian.org/debian unstable/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 144 http://deb.debian.org/debian unstable/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get: 145 http://deb.debian.org/debian unstable/main armhf libfile-listing-perl all 6.16-1 [12.4 kB]
Get: 146 http://deb.debian.org/debian unstable/main armhf libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get: 147 http://deb.debian.org/debian unstable/main armhf libhtml-parser-perl armhf 3.83-1+b1 [96.4 kB]
Get: 148 http://deb.debian.org/debian unstable/main armhf libhtml-tree-perl all 5.07-3 [211 kB]
Get: 149 http://deb.debian.org/debian unstable/main armhf libclone-perl armhf 0.47-1+b1 [13.3 kB]
Get: 150 http://deb.debian.org/debian unstable/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get: 151 http://deb.debian.org/debian unstable/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 152 http://deb.debian.org/debian unstable/main armhf libhttp-message-perl all 7.00-2 [79.8 kB]
Get: 153 http://deb.debian.org/debian unstable/main armhf libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get: 154 http://deb.debian.org/debian unstable/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get: 155 http://deb.debian.org/debian unstable/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 156 http://deb.debian.org/debian unstable/main armhf libwww-perl all 6.77-1 [183 kB]
Get: 157 http://deb.debian.org/debian unstable/main armhf liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get: 158 http://deb.debian.org/debian unstable/main armhf libterm-readkey-perl armhf 2.38-2+b4 [23.7 kB]
Get: 159 http://deb.debian.org/debian unstable/main armhf libcpan-uploader-perl all 0.103018-1 [16.3 kB]
Get: 160 http://deb.debian.org/debian unstable/main armhf libdata-section-perl all 0.200008-1 [13.1 kB]
Get: 161 http://deb.debian.org/debian unstable/main armhf libclass-inspector-perl all 1.36-3 [17.5 kB]
Get: 162 http://deb.debian.org/debian unstable/main armhf libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get: 163 http://deb.debian.org/debian unstable/main armhf libparams-validationcompiler-perl all 0.31-1 [30.9 kB]
Get: 164 http://deb.debian.org/debian unstable/main armhf libxstring-perl armhf 0.005-2+b4 [7812 B]
Get: 165 http://deb.debian.org/debian unstable/main armhf libspecio-perl all 0.48-1 [142 kB]
Get: 166 http://deb.debian.org/debian unstable/main armhf libdatetime-locale-perl all 1:1.41-1 [3131 kB]
Get: 167 http://deb.debian.org/debian unstable/main armhf libclass-singleton-perl all 1.6-2 [12.5 kB]
Get: 168 http://deb.debian.org/debian unstable/main armhf libdatetime-timezone-perl all 1:2.63-2+2024b [261 kB]
Get: 169 http://deb.debian.org/debian unstable/main armhf libdatetime-perl armhf 2:1.65-1+b2 [119 kB]
Get: 170 http://deb.debian.org/debian unstable/main armhf libfile-copy-recursive-perl all 0.45-4 [20.0 kB]
Get: 171 http://deb.debian.org/debian unstable/main armhf libnumber-compare-perl all 0.03-3 [6332 B]
Get: 172 http://deb.debian.org/debian unstable/main armhf libtext-glob-perl all 0.11-3 [7676 B]
Get: 173 http://deb.debian.org/debian unstable/main armhf libfile-find-rule-perl all 0.34-3 [26.6 kB]
Get: 174 http://deb.debian.org/debian unstable/main armhf libfile-pushd-perl all 1.016-2 [13.5 kB]
Get: 175 http://deb.debian.org/debian unstable/main armhf libfile-sharedir-install-perl all 0.14-2 [11.6 kB]
Get: 176 http://deb.debian.org/debian unstable/main armhf libhash-merge-simple-perl all 0.052-1 [8232 B]
Get: 177 http://deb.debian.org/debian unstable/main armhf libjson-perl all 4.10000-1 [87.5 kB]
Get: 178 http://deb.debian.org/debian unstable/main armhf liblog-dispatch-perl all 2.71-1 [75.8 kB]
Get: 179 http://deb.debian.org/debian unstable/main armhf liblog-dispatch-array-perl all 1.005-1 [6700 B]
Get: 180 http://deb.debian.org/debian unstable/main armhf libstring-flogger-perl all 1.101246-1 [7380 B]
Get: 181 http://deb.debian.org/debian unstable/main armhf libsub-exporter-globexporter-perl all 0.006-1 [8024 B]
Get: 182 http://deb.debian.org/debian unstable/main armhf liblog-dispatchouli-perl all 3.008-1 [34.4 kB]
Get: 183 http://deb.debian.org/debian unstable/main armhf libexporter-tiny-perl all 1.006002-1 [38.7 kB]
Get: 184 http://deb.debian.org/debian unstable/main armhf liblist-moreutils-xs-perl armhf 0.430-4+b1 [36.6 kB]
Get: 185 http://deb.debian.org/debian unstable/main armhf liblist-moreutils-perl all 0.430-2 [46.9 kB]
Get: 186 http://deb.debian.org/debian unstable/main armhf libsyntax-keyword-junction-perl all 0.003009-1 [12.7 kB]
Get: 187 http://deb.debian.org/debian unstable/main armhf libmoose-autobox-perl all 0.16-2 [52.8 kB]
Get: 188 http://deb.debian.org/debian unstable/main armhf libaliased-perl all 0.34-3 [13.5 kB]
Get: 189 http://deb.debian.org/debian unstable/main armhf libmoosex-lazyrequire-perl all 0.11-2 [9212 B]
Get: 190 http://deb.debian.org/debian unstable/main armhf libmoosex-setonce-perl all 0.200002-2 [6632 B]
Get: 191 http://deb.debian.org/debian unstable/main armhf libcarp-clan-perl all 6.08-2 [14.1 kB]
Get: 192 http://deb.debian.org/debian unstable/main armhf libsub-exporter-formethods-perl all 0.100055-1 [8024 B]
Get: 193 http://deb.debian.org/debian unstable/main armhf libmoosex-types-perl all 0.50-2 [54.6 kB]
Get: 194 http://deb.debian.org/debian unstable/main armhf libmoosex-types-perl-perl all 0.101344-1 [8160 B]
Get: 195 http://deb.debian.org/debian unstable/main armhf libpath-tiny-perl all 0.146-1 [56.2 kB]
Get: 196 http://deb.debian.org/debian unstable/main armhf libmodule-path-perl all 0.19-3 [12.3 kB]
Get: 197 http://deb.debian.org/debian unstable/main armhf libtask-weaken-perl all 1.06-2 [9364 B]
Get: 198 http://deb.debian.org/debian unstable/main armhf libppi-perl all 1.279-1 [294 kB]
Get: 199 http://deb.debian.org/debian unstable/main armhf libtype-tiny-perl all 2.004000-1 [357 kB]
Get: 200 http://deb.debian.org/debian unstable/main armhf libperl-prereqscanner-perl all 1.100-1 [31.0 kB]
Get: 201 http://deb.debian.org/debian unstable/main armhf libperl-version-perl all 1.017-1 [29.0 kB]
Get: 202 http://deb.debian.org/debian unstable/main armhf libtext-template-perl all 1.61-1 [54.4 kB]
Get: 203 http://deb.debian.org/debian unstable/main armhf libsoftware-license-perl all 0.104006-1 [116 kB]
Get: 204 http://deb.debian.org/debian unstable/main armhf libterm-encoding-perl all 0.03-2 [4980 B]
Get: 205 http://deb.debian.org/debian unstable/main armhf libyaml-tiny-perl all 1.74-1 [30.7 kB]
Get: 206 http://deb.debian.org/debian unstable/main armhf libdist-zilla-perl all 6.032-1 [343 kB]
Get: 207 http://deb.debian.org/debian unstable/main armhf dh-dist-zilla all 1.4.1 [17.9 kB]
Get: 208 http://deb.debian.org/debian unstable/main armhf fasttree armhf 2.1.11-2 [169 kB]
Get: 209 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB]
Get: 210 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB]
Get: 211 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB]
Get: 212 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 213 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get: 214 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1+b1 [318 kB]
Get: 215 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1+b1 [371 kB]
Get: 216 http://deb.debian.org/debian unstable/main armhf fontconfig armhf 2.15.0-1.1+b1 [461 kB]
Get: 217 http://deb.debian.org/debian unstable/main armhf libarray-utils-perl all 0.5-3 [6184 B]
Get: 218 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-4 [111 kB]
Get: 219 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.44.0-3 [164 kB]
Get: 220 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB]
Get: 221 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB]
Get: 222 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB]
Get: 223 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.10-2 [337 kB]
Get: 224 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB]
Get: 225 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.17.0-2+b1 [114 kB]
Get: 226 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-2+b1 [105 kB]
Get: 227 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB]
Get: 228 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b2 [25.0 kB]
Get: 229 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.2-2 [443 kB]
Get: 230 http://deb.debian.org/debian unstable/main armhf libconst-fast-perl all 0.014-2 [8792 B]
Get: 231 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB]
Get: 232 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB]
Get: 233 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB]
Get: 234 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB]
Get: 235 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB]
Get: 236 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB]
Get: 237 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB]
Get: 238 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.11.0-1 [303 kB]
Get: 239 http://deb.debian.org/debian unstable/main armhf libdata-compare-perl all 1.29-1 [19.6 kB]
Get: 240 http://deb.debian.org/debian unstable/main armhf libdatrie1 armhf 0.2.13-3+b1 [34.7 kB]
Get: 241 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.22-1 [36.3 kB]
Get: 242 http://deb.debian.org/debian unstable/main armhf libpod-eventual-perl all 0.094003-1 [14.2 kB]
Get: 243 http://deb.debian.org/debian unstable/main armhf libstring-truncate-perl all 1.100603-1 [10.2 kB]
Get: 244 http://deb.debian.org/debian unstable/main armhf libpod-elemental-perl all 0.103006-1 [67.2 kB]
Get: 245 http://deb.debian.org/debian unstable/main armhf libpod-elemental-perlmunger-perl all 0.200007-1 [10.5 kB]
Get: 246 http://deb.debian.org/debian unstable/main armhf libpod-weaver-perl all 4.020-1 [70.1 kB]
Get: 247 http://deb.debian.org/debian unstable/main armhf libdist-zilla-plugin-podweaver-perl all 4.010-1 [9580 B]
Get: 248 http://deb.debian.org/debian unstable/main armhf libenv-path-perl all 0.19-4 [19.1 kB]
Get: 249 http://deb.debian.org/debian unstable/main armhf libfile-chdir-perl all 0.1008-1.2 [11.9 kB]
Get: 250 http://deb.debian.org/debian unstable/main armhf libfile-grep-perl all 0.02-3 [8352 B]
Get: 251 http://deb.debian.org/debian unstable/main armhf libfile-slurper-perl all 0.014-1 [8560 B]
Get: 252 http://deb.debian.org/debian unstable/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get: 253 http://deb.debian.org/debian unstable/main armhf libfindbin-libs-perl all 3.0.2-1 [29.7 kB]
Get: 254 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.15-1 [70.0 kB]
Get: 255 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-8 [263 kB]
Get: 256 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.82.2-3 [1326 kB]
Get: 257 http://deb.debian.org/debian unstable/main armhf libheap-perl all 0.80-5 [34.3 kB]
Get: 258 http://deb.debian.org/debian unstable/main armhf libset-object-perl armhf 1.42-1+b5 [35.7 kB]
Get: 259 http://deb.debian.org/debian unstable/main armhf libgraph-perl all 1:0.9729-1 [108 kB]
Get: 260 http://deb.debian.org/debian unstable/main armhf libspiffy-perl all 0.46-1 [25.7 kB]
Get: 261 http://deb.debian.org/debian unstable/main armhf libio-all-perl all 0.87-2 [67.3 kB]
Get: 262 http://deb.debian.org/debian unstable/main armhf libparse-yapp-perl all 1.21-4 [41.5 kB]
Get: 263 http://deb.debian.org/debian unstable/main armhf libxml-parser-perl armhf 2.47-1+b3 [196 kB]
Get: 264 http://deb.debian.org/debian unstable/main armhf libxml-writer-perl all 0.900-2 [26.8 kB]
Get: 265 http://deb.debian.org/debian unstable/main armhf libgraph-readwrite-perl all 2.10-1 [45.2 kB]
Get: 266 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB]
Get: 267 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 10.0.1-1 [418 kB]
Get: 268 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23.1 [216 kB]
Get: 269 http://deb.debian.org/debian unstable/main armhf libice6 armhf 2:1.1.1-1 [58.5 kB]
Get: 270 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB]
Get: 271 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3+b1 [145 kB]
Get: 272 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-4 [1828 kB]
Get: 273 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB]
Get: 274 http://deb.debian.org/debian unstable/main armhf liblmdb0 armhf 0.9.31-1+b2 [38.1 kB]
Get: 275 http://deb.debian.org/debian unstable/main armhf liblog-log4perl-perl all 1.57-1 [367 kB]
Get: 276 http://deb.debian.org/debian unstable/main armhf libmbedcrypto16 armhf 3.6.2-3 [320 kB]
Get: 277 http://deb.debian.org/debian unstable/main armhf libmbedx509-7 armhf 3.6.2-3 [142 kB]
Get: 278 http://deb.debian.org/debian unstable/main armhf libmbedtls21 armhf 3.6.2-3 [220 kB]
Get: 279 http://deb.debian.org/debian unstable/main armhf libpadwalker-perl armhf 2.5-1+b6 [17.2 kB]
Get: 280 http://deb.debian.org/debian unstable/main armhf libthai-data all 0.1.29-2 [168 kB]
Get: 281 http://deb.debian.org/debian unstable/main armhf libthai0 armhf 0.1.29-2+b1 [46.0 kB]
Get: 282 http://deb.debian.org/debian unstable/main armhf libpango-1.0-0 armhf 1.55.0+ds-3 [200 kB]
Get: 283 http://deb.debian.org/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.55.0+ds-3 [47.7 kB]
Get: 284 http://deb.debian.org/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.55.0+ds-3 [31.3 kB]
Get: 285 http://deb.debian.org/debian unstable/main armhf libpaper1 armhf 1.1.29+b2 [12.2 kB]
Get: 286 http://deb.debian.org/debian unstable/main armhf libpaper-utils armhf 1.1.29+b2 [8700 B]
Get: 287 http://deb.debian.org/debian unstable/main armhf libsensors-config all 1:3.6.0-10 [14.6 kB]
Get: 288 http://deb.debian.org/debian unstable/main armhf libsensors5 armhf 1:3.6.0-10+b1 [32.3 kB]
Get: 289 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.4.0-0.1+b1 [111 kB]
Get: 290 http://deb.debian.org/debian unstable/main armhf libsm6 armhf 2:1.2.4-1 [33.5 kB]
Get: 291 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [934 kB]
Get: 292 http://deb.debian.org/debian unstable/main armhf libtest-file-perl all 1.993-1 [24.5 kB]
Get: 293 http://deb.debian.org/debian unstable/main armhf libtest2-suite-perl all 0.000163-1 [383 kB]
Get: 294 http://deb.debian.org/debian unstable/main armhf libtest-files-perl all 0.26-1 [21.6 kB]
Get: 295 http://deb.debian.org/debian unstable/main armhf libtest-output-perl all 1.034-1 [16.0 kB]
Get: 296 http://deb.debian.org/debian unstable/main armhf libtext-csv-perl all 2.04-1 [112 kB]
Get: 297 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.4.0-0.1+b1 [266 kB]
Get: 298 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB]
Get: 299 http://deb.debian.org/debian unstable/main armhf libtingea0 armhf 21-361-2+b2 [43.6 kB]
Get: 300 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b2 [46.5 kB]
Get: 301 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b2 [16.4 kB]
Get: 302 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.15-1 [697 kB]
Get: 303 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-7 [134 kB]
Get: 304 http://deb.debian.org/debian unstable/main armhf libxt6t64 armhf 1:1.2.1-1.2+b1 [160 kB]
Get: 305 http://deb.debian.org/debian unstable/main armhf mafft armhf 7.505-1 [784 kB]
Get: 306 http://deb.debian.org/debian unstable/main armhf mcl armhf 1:22-282+ds-2 [405 kB]
Get: 307 http://deb.debian.org/debian unstable/main armhf ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB]
Get: 308 http://deb.debian.org/debian unstable/main armhf ncbi-blast+ armhf 2.16.0+ds-6+b1 [13.4 MB]
Get: 309 http://deb.debian.org/debian unstable/main armhf sysstat armhf 12.7.5-2 [600 kB]
Get: 310 http://deb.debian.org/debian unstable/main armhf parallel all 20240222+ds-2 [2163 kB]
Get: 311 http://deb.debian.org/debian unstable/main armhf prank armhf 0.0.170427+dfsg-3 [342 kB]
Get: 312 http://deb.debian.org/debian unstable/main armhf zip armhf 3.0-14 [221 kB]
Get: 313 http://deb.debian.org/debian unstable/main armhf unzip armhf 6.0-28 [152 kB]
Get: 314 http://deb.debian.org/debian unstable/main armhf xdg-utils all 1.2.1-2 [75.8 kB]
Get: 315 http://deb.debian.org/debian unstable/main armhf r-base-core armhf 4.4.2-1 [28.0 MB]
Fetched 109 MB in 3s (36.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.12-minimal:armhf.
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Setting up libpython3.12-minimal:armhf (3.12.7-3) ...
Setting up libexpat1:armhf (2.6.4-1) ...
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Unpacking python3-minimal (3.12.7-1) ...
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Preparing to unpack .../01-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
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Preparing to unpack .../02-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
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Unpacking tzdata (2024b-4) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ...
Unpacking libkrb5support0:armhf (1.21.3-3) ...
Selecting previously unselected package libcom-err2:armhf.
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Unpacking libcom-err2:armhf (1.47.2~rc1-2) ...
Selecting previously unselected package libk5crypto3:armhf.
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Unpacking libk5crypto3:armhf (1.21.3-3) ...
Selecting previously unselected package libkeyutils1:armhf.
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Unpacking libkeyutils1:armhf (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:armhf.
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Unpacking libkrb5-3:armhf (1.21.3-3) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
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Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ...
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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Unpacking libnsl2:armhf (1.3.0-3+b3) ...
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Unpacking readline-common (8.2-5) ...
Selecting previously unselected package libreadline8t64:armhf.
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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:armhf (8.2-5) ...
Selecting previously unselected package libpython3.12-stdlib:armhf.
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Setting up python3-minimal (3.12.7-1) ...
Selecting previously unselected package python3.
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Selecting previously unselected package libproc2-0:armhf.
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Unpacking ca-certificates (20240203) ...
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Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel'
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Setting up libpipeline1:armhf (1.5.8-1) ...
Setting up liblmdb0:armhf (0.9.31-1+b2) ...
Setting up libgraphite2-3:armhf (1.3.14-2+b1) ...
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Setting up ncbi-data (6.1.20170106+dfsg2-5) ...
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Setting up libxau6:armhf (1:1.0.11-1) ...
Setting up libxdmcp6:armhf (1:1.1.5-1) ...
Setting up libkeyutils1:armhf (1.6.3-4) ...
Setting up libxcb1:armhf (1.17.0-2+b1) ...
Setting up libtie-ixhash-perl (1.23-4) ...
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Setting up libicu72:armhf (72.1-5+b1) ...
Setting up liblerc4:armhf (4.0.0+ds-5) ...
Setting up bsdextrautils (2.40.2-11) ...
Setting up libparse-yapp-perl (1.21-4) ...
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Setting up libdatrie1:armhf (0.2.13-3+b1) ...
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Setting up mafft (7.505-1) ...
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Setting up libalgorithm-diff-perl (1.201-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3+b3) ...
Setting up libcpanel-json-xs-perl:armhf (4.38-1+b1) ...
Setting up libio-stringy-perl (2.113-2) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up libhtml-tagset-perl (3.24-1) ...
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Setting up unzip (6.0-28) ...
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Setting up libuv1t64:armhf (1.48.0-7) ...
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Setting up x11-common (1:7.7+23.1) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
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Setting up perl-openssl-defaults:armhf (7+b2) ...
Setting up gettext-base (0.22.5-2) ...
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Setting up libpadwalker-perl (2.5-1+b6) ...
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Setting up file (1:5.45-3+b1) ...
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Current default time zone: 'Etc/UTC'
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Run 'dpkg-reconfigure tzdata' if you wish to change it.
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Setting up libglib2.0-0t64:armhf (2.82.2-3) ...
No schema files found: doing nothing.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libpng16-16t64:armhf (1.6.44-2) ...
Setting up libvariable-magic-perl (0.64-1+b1) ...
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Setting up libgfortran5:armhf (14.2.0-8) ...
Setting up autoconf (2.72-3) ...
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Setting up libexporter-tiny-perl (1.006002-1) ...
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Setting up openssl (3.3.2-2) ...
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Setting up readline-common (8.2-5) ...
Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up bedtools (2.31.1+dfsg-2) ...
Setting up liburi-perl (5.30-1) ...
Setting up prank (0.0.170427+dfsg-3) ...
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libice6:armhf (2:1.1.1-1) ...
Setting up libhttp-date-perl (6.06-1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libdevel-callchecker-perl:armhf (0.009-1+b1) ...
Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3+b1) ...
Setting up libdata-compare-perl (1.29-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-2+b1) ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
Setting up libmbedx509-7:armhf (3.6.2-3) ...
Setting up libtest-exception-perl (0.43-3) ...
Setting up libfreetype6:armhf (2.13.3+dfsg-1) ...
Setting up mcl (1:22-282+ds-2) ...
Setting up libppi-perl (1.279-1) ...
Setting up libgssapi-krb5-2:armhf (1.21.3-3) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libtest-output-perl (1.034-1) ...
Setting up ucf (3.0044) ...
Setting up libsyntax-keyword-junction-perl (0.003009-1) ...
Setting up libmbedtls21:armhf (3.6.2-3) ...
Setting up libreadline8t64:armhf (8.2-5) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up groff-base (1.23.0-5) ...
Setting up libhtml-parser-perl:armhf (3.83-1+b1) ...
Setting up libharfbuzz0b:armhf (10.0.1-1) ...
Setting up libxss1:armhf (1:1.2.3-1+b2) ...
Setting up libfontconfig1:armhf (2.15.0-1.1+b1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.4-1) ...
Setting up sysstat (12.7.5-2) ...
Creating config file /etc/default/sysstat with new version
update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode
Setting up libio-socket-ssl-perl (2.089-1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.00-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libstring-truncate-perl (1.100603-1) ...
Setting up libpaper1:armhf (1.1.29+b2) ...
Creating config file /etc/papersize with new version
Setting up libstring-flogger-perl (1.101246-1) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up fontconfig (2.15.0-1.1+b1) ...
Regenerating fonts cache... done.
Setting up libparams-validationcompiler-perl (0.31-1) ...
Setting up libxft2:armhf (2.3.6-1+b2) ...
Setting up libcurl4t64:armhf (8.11.0-1) ...
Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ...
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Not building database; man-db/auto-update is not 'true'.
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Creating config file /etc/R/Renviron with new version
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Processing triggers for libc-bin (2.40-4) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/roary-3.13.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../roary_3.13.0+dfsg-2_source.changes
dpkg-buildpackage: info: source package roary
dpkg-buildpackage: info: source version 3.13.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Ananthu C V <weepingclown@disroot.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with dist-zilla
dh_dzil_clean
dh_clean
debian/rules binary
dh binary --with dist-zilla
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_dzil_build
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg'
mv bin/create_pan_genome_plots.R bin/create_pan_genome_plots
dh_dzil_build --
[DZ] beginning to build Bio-Roary
[DZ] writing Bio-Roary in .build/debian-build
[DZ] built in .build/debian-build
mv bin/create_pan_genome_plots bin/create_pan_genome_plots.R
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg'
dh_auto_configure -D .build/debian-build
cd .build/debian-build && /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/roary-3.13.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/roary-3.13.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro"
Warning: prerequisite Digest::MD5::File 0 not found.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Roary
Writing MYMETA.yml and MYMETA.json
dh_auto_build -D .build/debian-build
cd .build/debian-build && make -j3
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg/.build/debian-build'
cp lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm blib/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
cp lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm blib/lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
cp lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm blib/lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
cp lib/Bio/Roary/AssemblyStatistics.pm blib/lib/Bio/Roary/AssemblyStatistics.pm
cp lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm blib/lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
cp lib/Bio/Roary/BedFromGFFRole.pm blib/lib/Bio/Roary/BedFromGFFRole.pm
cp lib/Bio/Roary/AnalyseGroups.pm blib/lib/Bio/Roary/AnalyseGroups.pm
cp lib/Bio/Roary/CommandLine/IterativeCdhit.pm blib/lib/Bio/Roary/CommandLine/IterativeCdhit.pm
cp lib/Bio/Roary/CommandLine/QueryRoary.pm blib/lib/Bio/Roary/CommandLine/QueryRoary.pm
cp lib/Bio/Roary/AnnotateGroups.pm blib/lib/Bio/Roary/AnnotateGroups.pm
cp lib/Bio/Roary/CommandLine/AssemblyStatistics.pm blib/lib/Bio/Roary/CommandLine/AssemblyStatistics.pm
cp lib/Bio/Roary/CommandLine/Roary.pm blib/lib/Bio/Roary/CommandLine/Roary.pm
cp lib/Bio/Roary/External/CheckTools.pm blib/lib/Bio/Roary/External/CheckTools.pm
cp lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm blib/lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm
cp lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm blib/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
cp lib/Bio/Roary/CommandLine/CreatePanGenome.pm blib/lib/Bio/Roary/CommandLine/CreatePanGenome.pm
cp lib/Bio/Roary/CommandLine/Common.pm blib/lib/Bio/Roary/CommandLine/Common.pm
cp lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm blib/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
cp lib/Bio/Roary/AccessoryClustering.pm blib/lib/Bio/Roary/AccessoryClustering.pm
cp lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm blib/lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
cp lib/Bio/Roary/External/Cdhit.pm blib/lib/Bio/Roary/External/Cdhit.pm
cp lib/Bio/Roary.pm blib/lib/Bio/Roary.pm
cp lib/Bio/Roary/External/Blastp.pm blib/lib/Bio/Roary/External/Blastp.pm
cp lib/Bio/Roary/Exceptions.pm blib/lib/Bio/Roary/Exceptions.pm
cp lib/Bio/Roary/CombinedProteome.pm blib/lib/Bio/Roary/CombinedProteome.pm
cp lib/Bio/Roary/ChunkFastaFile.pm blib/lib/Bio/Roary/ChunkFastaFile.pm
cp lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/AccessoryBinaryFasta.pm blib/lib/Bio/Roary/AccessoryBinaryFasta.pm
cp lib/Bio/Roary/ClustersRole.pm blib/lib/Bio/Roary/ClustersRole.pm
cp lib/Bio/Roary/Output/DifferenceBetweenSets.pm blib/lib/Bio/Roary/Output/DifferenceBetweenSets.pm
cp lib/Bio/Roary/JobRunner/Local.pm blib/lib/Bio/Roary/JobRunner/Local.pm
cp lib/Bio/Roary/JobRunner/Parallel.pm blib/lib/Bio/Roary/JobRunner/Parallel.pm
cp lib/Bio/Roary/InflateClusters.pm blib/lib/Bio/Roary/InflateClusters.pm
cp lib/Bio/Roary/Output/EMBLHeaderCommon.pm blib/lib/Bio/Roary/Output/EMBLHeaderCommon.pm
cp lib/Bio/Roary/External/IterativeCdhit.pm blib/lib/Bio/Roary/External/IterativeCdhit.pm
cp lib/Bio/Roary/External/Prank.pm blib/lib/Bio/Roary/External/Prank.pm
cp lib/Bio/Roary/External/Mafft.pm blib/lib/Bio/Roary/External/Mafft.pm
cp lib/Bio/Roary/External/PostAnalysis.pm blib/lib/Bio/Roary/External/PostAnalysis.pm
cp lib/Bio/Roary/Output/BlastIdentityFrequency.pm blib/lib/Bio/Roary/Output/BlastIdentityFrequency.pm
cp lib/Bio/Roary/GeneNamesFromGFF.pm blib/lib/Bio/Roary/GeneNamesFromGFF.pm
cp lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm blib/lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
cp lib/Bio/Roary/Output/GroupMultifasta.pm blib/lib/Bio/Roary/Output/GroupMultifasta.pm
cp lib/Bio/Roary/IterativeCdhit.pm blib/lib/Bio/Roary/IterativeCdhit.pm
cp lib/Bio/Roary/External/Makeblastdb.pm blib/lib/Bio/Roary/External/Makeblastdb.pm
cp lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
cp lib/Bio/Roary/FilterUnknownsFromFasta.pm blib/lib/Bio/Roary/FilterUnknownsFromFasta.pm
cp lib/Bio/Roary/ExtractProteomeFromGFF.pm blib/lib/Bio/Roary/ExtractProteomeFromGFF.pm
cp lib/Bio/Roary/MergeMultifastaAlignments.pm blib/lib/Bio/Roary/MergeMultifastaAlignments.pm
cp lib/Bio/Roary/GroupLabels.pm blib/lib/Bio/Roary/GroupLabels.pm
cp lib/Bio/Roary/JobRunner/Role.pm blib/lib/Bio/Roary/JobRunner/Role.pm
cp lib/Bio/Roary/FilterFullClusters.pm blib/lib/Bio/Roary/FilterFullClusters.pm
cp lib/Bio/Roary/Output/EmblGroups.pm blib/lib/Bio/Roary/Output/EmblGroups.pm
cp lib/Bio/Roary/ExtractProteomeFromGFFs.pm blib/lib/Bio/Roary/ExtractProteomeFromGFFs.pm
cp lib/Bio/Roary/OrderGenes.pm blib/lib/Bio/Roary/OrderGenes.pm
cp lib/Bio/Roary/External/Fasttree.pm blib/lib/Bio/Roary/External/Fasttree.pm
cp lib/Bio/Roary/GroupStatistics.pm blib/lib/Bio/Roary/GroupStatistics.pm
cp lib/Bio/Roary/External/Mcl.pm blib/lib/Bio/Roary/External/Mcl.pm
cp lib/Bio/Roary/LookupGeneFiles.pm blib/lib/Bio/Roary/LookupGeneFiles.pm
cp lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm blib/lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
cp lib/Bio/Roary/UniqueGenesPerSample.pm blib/lib/Bio/Roary/UniqueGenesPerSample.pm
cp lib/Bio/Roary/SampleOrder.pm blib/lib/Bio/Roary/SampleOrder.pm
cp lib/Bio/Roary/QC/Report.pm blib/lib/Bio/Roary/QC/Report.pm
cp lib/Bio/Roary/SpreadsheetRole.pm blib/lib/Bio/Roary/SpreadsheetRole.pm
cp lib/Bio/Roary/Output/GroupsMultifastas.pm blib/lib/Bio/Roary/Output/GroupsMultifastas.pm
cp lib/Bio/Roary/ParallelAllAgainstAllBlast.pm blib/lib/Bio/Roary/ParallelAllAgainstAllBlast.pm
cp lib/Bio/Roary/ReorderSpreadsheet.pm blib/lib/Bio/Roary/ReorderSpreadsheet.pm
cp lib/Bio/Roary/PresenceAbsenceMatrix.pm blib/lib/Bio/Roary/PresenceAbsenceMatrix.pm
cp lib/Bio/Roary/SplitGroups.pm blib/lib/Bio/Roary/SplitGroups.pm
cp lib/Bio/Roary/Output/GroupsMultifastaProtein.pm blib/lib/Bio/Roary/Output/GroupsMultifastaProtein.pm
cp lib/Bio/Roary/Output/QueryGroups.pm blib/lib/Bio/Roary/Output/QueryGroups.pm
cp lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
cp lib/Bio/Roary/SortFasta.pm blib/lib/Bio/Roary/SortFasta.pm
cp lib/Bio/Roary/ReformatInputGFFs.pm blib/lib/Bio/Roary/ReformatInputGFFs.pm
cp lib/Bio/Roary/Output/NumberOfGroups.pm blib/lib/Bio/Roary/Output/NumberOfGroups.pm
cp lib/Bio/Roary/PostAnalysis.pm blib/lib/Bio/Roary/PostAnalysis.pm
cp lib/Bio/Roary/SequenceLengths.pm blib/lib/Bio/Roary/SequenceLengths.pm
cp lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
cp lib/Bio/Roary/ParseGFFAnnotationRole.pm blib/lib/Bio/Roary/ParseGFFAnnotationRole.pm
cp lib/Bio/Roary/PrepareInputFiles.pm blib/lib/Bio/Roary/PrepareInputFiles.pm
cp bin/create_pan_genome blib/script/create_pan_genome
cp bin/create_pan_genome_plots blib/script/create_pan_genome_plots
cp bin/extract_proteome_from_gff blib/script/extract_proteome_from_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome_plots
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/extract_proteome_from_gff
cp bin/iterative_cdhit blib/script/iterative_cdhit
cp bin/pan_genome_assembly_statistics blib/script/pan_genome_assembly_statistics
cp bin/pan_genome_core_alignment blib/script/pan_genome_core_alignment
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/iterative_cdhit
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_assembly_statistics
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_core_alignment
cp bin/pan_genome_post_analysis blib/script/pan_genome_post_analysis
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_post_analysis
cp bin/pan_genome_reorder_spreadsheet blib/script/pan_genome_reorder_spreadsheet
cp bin/parallel_all_against_all_blastp blib/script/parallel_all_against_all_blastp
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/parallel_all_against_all_blastp
cp bin/protein_alignment_from_nucleotides blib/script/protein_alignment_from_nucleotides
cp bin/query_pan_genome blib/script/query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/protein_alignment_from_nucleotides
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/query_pan_genome
cp bin/roary blib/script/roary
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary
cp bin/roary-create_pan_genome_plots.R blib/script/roary-create_pan_genome_plots.R
cp bin/roary-pan_genome_reorder_spreadsheet blib/script/roary-pan_genome_reorder_spreadsheet
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-create_pan_genome_plots.R
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-pan_genome_reorder_spreadsheet
cp bin/roary-query_pan_genome blib/script/roary-query_pan_genome
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-query_pan_genome
cp bin/roary-unique_genes_per_sample blib/script/roary-unique_genes_per_sample
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-unique_genes_per_sample
cp bin/transfer_annotation_to_groups blib/script/transfer_annotation_to_groups
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/transfer_annotation_to_groups
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg/.build/debian-build'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg'
# Hmmm, seems the test is not automatically run anyway by the build system
dh_auto_test || true
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install -D .build/debian-build --destdir=debian/roary/
cd .build/debian-build && make -j3 install DESTDIR=/build/reproducible-path/roary-3.13.0\+dfsg/debian/roary AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg/.build/debian-build'
Manifying 16 pod documents
Manifying 26 pod documents
Manifying 28 pod documents
Manifying 25 pod documents
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PostAnalysis.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ClustersRole.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnnotateGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnalyseGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/OrderGenes.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Exceptions.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryClustering.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SequenceLengths.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SampleOrder.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/IterativeCdhit.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/InflateClusters.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SplitGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SortFasta.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/UniqueGenesPerSample.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupStatistics.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CombinedProteome.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupLabels.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterFullClusters.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastas.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaProtein.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupMultifasta.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/DifferenceBetweenSets.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EmblGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/QueryGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Common.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Role.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Local.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Prank.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Makeblastdb.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Blastp.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mcl.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mafft.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Cdhit.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Fasttree.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/CheckTools.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/perl5/Bio/Roary/QC/Report.pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/parallel_all_against_all_blastp.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/iterative_cdhit.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_core_alignment.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/protein_alignment_from_nucleotides.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/extract_proteome_from_gff.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/create_pan_genome.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/transfer_annotation_to_groups.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/create_pan_genome_plots.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-query_pan_genome.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_post_analysis.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary-unique_genes_per_sample.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/pan_genome_assembly_statistics.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/roary.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man1/query_pan_genome.1p
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::UniqueGenesPerSample.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mafft.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Blastp.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::OrderGenes.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::CheckTools.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::InflateClusters.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupStatistics.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupLabels.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SequenceLengths.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Exceptions.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mcl.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SortFasta.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SplitGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SampleOrder.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::UniqueGenesPerSample.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Prank.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ClustersRole.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::QC::Report.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/transfer_annotation_to_groups
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/protein_alignment_from_nucleotides
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_post_analysis
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-query_pan_genome
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-unique_genes_per_sample
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/create_pan_genome_plots
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-pan_genome_reorder_spreadsheet
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/parallel_all_against_all_blastp
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_reorder_spreadsheet
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/query_pan_genome
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_assembly_statistics
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/iterative_cdhit
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/create_pan_genome
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/roary-create_pan_genome_plots.R
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/pan_genome_core_alignment
Installing /build/reproducible-path/roary-3.13.0+dfsg/debian/roary/usr/bin/extract_proteome_from_gff
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg/.build/debian-build'
debian/rules execute_after_dh_install
make[1]: Entering directory '/build/reproducible-path/roary-3.13.0+dfsg'
# debian policy 10.4
mv debian/roary/usr/bin/roary-create_pan_genome_plots.R debian/roary/usr/bin/roary-create_pan_genome_plots
make[1]: Leaving directory '/build/reproducible-path/roary-3.13.0+dfsg'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'roary' in '../roary_3.13.0+dfsg-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../roary_3.13.0+dfsg-2_armhf.buildinfo
dpkg-genchanges --build=binary -O../roary_3.13.0+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/25679 and its subdirectories
I: Current time: Wed Dec 4 05:44:40 -12 2024
I: pbuilder-time-stamp: 1733334280
Wed Dec 4 17:44:49 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64c-armhf-rb.debian.net.
Wed Dec 4 17:44:49 UTC 2024 I: Preparing to do remote build '2' on virt64c-armhf-rb.debian.net.
Wed Dec 4 17:50:27 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net.
Wed Dec 4 17:50:29 UTC 2024 I: roary_3.13.0+dfsg-2_armhf.changes:
Format: 1.8
Date: Mon, 02 Dec 2024 23:00:41 +0530
Source: roary
Binary: roary
Architecture: all
Version: 3.13.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Ananthu C V <weepingclown@disroot.org>
Description:
roary - high speed stand alone pan genome pipeline
Closes: 1047005 1049576
Changes:
roary (3.13.0+dfsg-2) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* Use common naming scheme for autopkgtest scripts
* Provide autopkgtest as user example
* Standards-Version: 4.6.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Use secure URI in Homepage field.
* Drop unneeded lintian-overrides
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Add debug for "Cannot find the mcxdeblast executable, please ensure
its in your PATH"
* Fix autopkgtest
* The missing mcxdeblast issue is gone
.
[ Ananthu C V ]
* Move file to original place after build (Closes: #1047005, #1049576)
* Remove language suffix from installed scripts
* Bump standards version to 4.7.0 (no changes needed)
Checksums-Sha1:
15c0daf3d8e54f03289696a2640e0c75cd9a92f3 185372 roary_3.13.0+dfsg-2_all.deb
c41efc8e46198b05f9dec12c72f5c30ed8e49b0d 14389 roary_3.13.0+dfsg-2_armhf.buildinfo
Checksums-Sha256:
d17eb6670706c80adb047f608f299e09cad011f4d21f330036010db9152cd648 185372 roary_3.13.0+dfsg-2_all.deb
9d1cdf084b297b231f9a181fcad86b6da55c4366fed0e85d51d3d3a0ea7bff8c 14389 roary_3.13.0+dfsg-2_armhf.buildinfo
Files:
b9a0608203b4c68c800b0b143f644c54 185372 science optional roary_3.13.0+dfsg-2_all.deb
e87164d23f5383fd5cd6d1c57db4a338 14389 science optional roary_3.13.0+dfsg-2_armhf.buildinfo
Wed Dec 4 17:50:30 UTC 2024 I: diffoscope 283 will be used to compare the two builds:
Running as unit: rb-diffoscope-armhf_2-9613.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qChvf7PL/roary_3.13.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qChvf7PL/roary_3.13.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qChvf7PL/roary_3.13.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qChvf7PL/b1/roary_3.13.0+dfsg-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.qChvf7PL/b2/roary_3.13.0+dfsg-2_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.412s)
0.412s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.021s)
0.021s 12 calls diffoscope.comparators.binary.FilesystemFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 769ms
CPU time consumed: 770ms
Wed Dec 4 17:50:31 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists.
Wed Dec 4 17:50:31 UTC 2024 I: roary from unstable built successfully and reproducibly on armhf.
Wed Dec 4 17:50:33 UTC 2024 I: Submitting .buildinfo files to external archives:
Wed Dec 4 17:50:33 UTC 2024 I: Submitting 16K b1/roary_3.13.0+dfsg-2_armhf.buildinfo.asc
Wed Dec 4 17:50:34 UTC 2024 I: Submitting 16K b2/roary_3.13.0+dfsg-2_armhf.buildinfo.asc
Wed Dec 4 17:50:34 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Dec 4 17:50:34 UTC 2024 I: Done submitting .buildinfo files.
Wed Dec 4 17:50:34 UTC 2024 I: Removing signed roary_3.13.0+dfsg-2_armhf.buildinfo.asc files:
removed './b1/roary_3.13.0+dfsg-2_armhf.buildinfo.asc'
removed './b2/roary_3.13.0+dfsg-2_armhf.buildinfo.asc'