Mon Feb 3 07:35:43 UTC 2025 I: starting to build bio-rainbow/unstable/i386 on jenkins on '2025-02-03 07:35' Mon Feb 3 07:35:43 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/49290/console.log Mon Feb 3 07:35:43 UTC 2025 I: Downloading source for unstable/bio-rainbow=2.0.4+dfsg-2 --2025-02-03 07:35:43-- http://deb.debian.org/debian/pool/main/b/bio-rainbow/bio-rainbow_2.0.4%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2094 (2.0K) [text/prs.lines.tag] Saving to: ‘bio-rainbow_2.0.4+dfsg-2.dsc’ 0K .. 100% 355M=0s 2025-02-03 07:35:43 (355 MB/s) - ‘bio-rainbow_2.0.4+dfsg-2.dsc’ saved [2094/2094] Mon Feb 3 07:35:43 UTC 2025 I: bio-rainbow_2.0.4+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bio-rainbow Binary: bio-rainbow Architecture: any Version: 2.0.4+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Pranav Ballaney Homepage: http://sourceforge.net/projects/bio-rainbow/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/bio-rainbow Vcs-Git: https://salsa.debian.org/med-team/bio-rainbow.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: bio-rainbow deb science optional arch=any Checksums-Sha1: 69aa7e1ad4254ee1f2aa3f4d62bb49be724654aa 58808 bio-rainbow_2.0.4+dfsg.orig.tar.xz 0167f4b007285a9c2f54f313a7a1c475aaebc0d5 14012 bio-rainbow_2.0.4+dfsg-2.debian.tar.xz Checksums-Sha256: a4e77785f8b5419d8d40aaa0b3b3fe48d3892793dec60049ca5074e43fe46b5e 58808 bio-rainbow_2.0.4+dfsg.orig.tar.xz 2ff6db13165339d6b52e13eea6ab32700a48c662d9409062a18cebe156836a36 14012 bio-rainbow_2.0.4+dfsg-2.debian.tar.xz Files: 9dcb2fb4e52a73ffe32c61f97921c8e0 58808 bio-rainbow_2.0.4+dfsg.orig.tar.xz cb7bb50a5910620b126226506cc13922 14012 bio-rainbow_2.0.4+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9CvWsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG0WRAAjkL/JGdzH8Lv124xrTFM+K7v1nXRx+4S kjbW3pVRURp6XgXFRiJ47x1nknjpS6h7AO2MLQ1zLJ27CyIFdRsZSliH8T3afxIE wn17QfCIwmbYP8S/LMo0viD5xuB5C2LVj9Zncn1M05qacdecUgayX62YVOavQcyz V7CYc5ohABV7Fdq+0GKttEIOy/WSstj3vquHogjA7x0CI+THxPcpUhkmndx7aMFV gEJUm981/Y92LUkqGNHGZp9NGyq9EVHuOQYVZ/1pQI5R5iLJvBXDOYugM0NTRW+d asxNiLY3W0kpYQTkLcrk1kjJFA4EjUzT1Wq1ZZvXso+agEh8V+32ZuJmAIA6D163 YCYpwlk8/dpoOlnWqBv8tue9nm431troD1rHjyVg/1QdlQjvmmrpNPd8NdH7aFw8 X7P4ShZwU0EhAW0ysJi96R49ZpN6AnLNgP4O99EYj2eDe7im9OyOaF/EwXAWCwOf CO9g4d8Cms3WsCmSQySavDjqjgPBF/9yFwuya4PBmbjtOac5p/6wpHMlVUO2c/Uc RpRGvm8awZu7S0d4izN9ouHSOLdfekKZjxscHrLFNCgWK0EdnRuyPJGiCcDtFkgM ZadBsADFHUyO9+AzhE49D5Z3sDU3/nn+m3JEcwE38oLDHUQglaPsZtJybg38hHYz eyvo4OggmpE= =e4K2 -----END PGP SIGNATURE----- Mon Feb 3 07:35:43 UTC 2025 I: Checking whether the package is not for us Mon Feb 3 07:35:43 UTC 2025 I: Starting 1st build on remote node ionos12-i386.debian.net. Mon Feb 3 07:35:43 UTC 2025 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Mon Feb 3 07:36:36 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 2 19:35:44 -12 2025 I: pbuilder-time-stamp: 1738568145 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [bio-rainbow_2.0.4+dfsg-2.dsc] I: copying [./bio-rainbow_2.0.4+dfsg.orig.tar.xz] I: copying [./bio-rainbow_2.0.4+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./bio-rainbow_2.0.4+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting bio-rainbow in bio-rainbow-2.0.4+dfsg dpkg-source: info: unpacking bio-rainbow_2.0.4+dfsg.orig.tar.xz tar: Ignoring unknown extended header keyword 'LIBARCHIVE.creationtime' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' dpkg-source: info: unpacking bio-rainbow_2.0.4+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_hardening.patch dpkg-source: info: applying rename_binary.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3185/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='f37f8a6912d34e7e9c750d0160d03f7a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3185' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sjY4WVaG/pbuilderrc_ftLU --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sjY4WVaG/b1 --logfile b1/build.log bio-rainbow_2.0.4+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3185/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19826 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 21.0 MB of archives. After unpacking 78.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-2 [96.1 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-3 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 23 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Fetched 21.0 MB in 0s (65.4 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19826 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.4-2_i386.deb ... Unpacking bsdextrautils (2.40.4-2) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../24-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../25-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bio-rainbow-2.0.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bio-rainbow_2.0.4+dfsg-2_source.changes dpkg-buildpackage: info: source package bio-rainbow dpkg-buildpackage: info: source version 2.0.4+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pranav Ballaney dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j11 clean make[1]: Entering directory '/build/reproducible-path/bio-rainbow-2.0.4+dfsg' rm -f *.o *.gcda *.gcno *.gcov gmon.out bio-rainbow rbasm ezmsim rbmergetag *.exe make[1]: Leaving directory '/build/reproducible-path/bio-rainbow-2.0.4+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j11 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bio-rainbow-2.0.4+dfsg' gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 main.c -o main.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 divide.c -o divide.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 file_reader.c -o file_reader.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 asm_R2.c -o asm_R2.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 mergectg.c -o mergectg.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 cluster.c -o cluster.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 ezmsim.c -o ezmsim.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 rbasm_main.c -o rbasm_main.o ezmsim.c: In function 'LR_main': ezmsim.c:440:33: warning: this statement may fall through [-Wimplicit-fallthrough=] 440 | case 'z': cut = strdup(optarg); | ^~~~~~~~~~~~~~ ezmsim.c:441:17: note: here 441 | case 'p': pos = atoi(optarg); | ^~~~ ezmsim.c: In function 'EF_main': ezmsim.c:707:33: warning: this statement may fall through [-Wimplicit-fallthrough=] 707 | case 'z': cut = strdup(optarg); | ^~~~~~~~~~~~~~ ezmsim.c:708:17: note: here 708 | case 'p': pos = atoi(optarg); | ^~~~ file_reader.c: In function 'fopen_m_filereader': file_reader.c:38:48: warning: '%s' directive writing between 4 and 2147483645 bytes into a region of size 2147483638 [-Wformat-overflow=] 38 | sprintf(cmd, "gzip -dc %s", filenames[i]); | ^~ In file included from /usr/include/stdio.h:970, from file_reader.h:22, from file_reader.c:20: In function 'sprintf', inlined from 'fopen_m_filereader' at file_reader.c:38:4: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 14 and 2147483655 bytes into a destination of size 2147483647 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ At top level: cc1: note: unrecognized command-line option '-Wno-self-assign' may have been intended to silence earlier diagnostics At top level: cc1: note: unrecognized command-line option '-Wno-self-assign' may have been intended to silence earlier diagnostics gcc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -o ezmsim ezmsim.o -lm gcc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -o rbasm asm_R2.o rbasm_main.o file_reader.o -lm gcc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bio-rainbow-2.0.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -o bio-rainbow main.o divide.o file_reader.o asm_R2.o mergectg.o cluster.o -lm make[1]: Leaving directory '/build/reproducible-path/bio-rainbow-2.0.4+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/bio-rainbow/ dh_install dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/bio-rainbow-2.0.4+dfsg' # dh_installman is messing up .sh extension as language extension dh_install debian/mans/*.1 usr/share/man/man1 make[1]: Leaving directory '/build/reproducible-path/bio-rainbow-2.0.4+dfsg' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'bio-rainbow' in '../bio-rainbow_2.0.4+dfsg-2_i386.deb'. dpkg-deb: building package 'bio-rainbow-dbgsym' in '../bio-rainbow-dbgsym_2.0.4+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../bio-rainbow_2.0.4+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../bio-rainbow_2.0.4+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3185 and its subdirectories I: Current time: Sun Feb 2 19:36:35 -12 2025 I: pbuilder-time-stamp: 1738568195 Mon Feb 3 07:36:37 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Mon Feb 3 07:36:37 UTC 2025 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Mon Feb 3 07:37:13 UTC 2025 I: Deleting $TMPDIR on ionos6-i386.debian.net. Mon Feb 3 07:37:14 UTC 2025 I: bio-rainbow_2.0.4+dfsg-2_i386.changes: Format: 1.8 Date: Sun, 23 Aug 2020 05:32:47 +0530 Source: bio-rainbow Binary: bio-rainbow bio-rainbow-dbgsym Architecture: i386 Version: 2.0.4+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pranav Ballaney Description: bio-rainbow - clustering and assembling short reads for bioinformatics Changes: bio-rainbow (2.0.4+dfsg-2) unstable; urgency=medium . [ Steffen Möller ] * Updated bio.tools ref * Added ref to conda . [ Pranav Ballaney ] * Install data for autopkgtests * Add autopkgtests * Install docs * Add Pranav Ballaney to Uploaders * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 9fcf0c526c63d6983b4bd7fdc34730156928e4eb 168020 bio-rainbow-dbgsym_2.0.4+dfsg-2_i386.deb acd1f52639aeca1dc41787f98ac51901e465b24f 5034 bio-rainbow_2.0.4+dfsg-2_i386.buildinfo 813cbdbc3effd071f4bd0563a933668cdb09ed45 63768 bio-rainbow_2.0.4+dfsg-2_i386.deb Checksums-Sha256: fe680028f6216e1d489aa8b87ccc9395569fb5da918dfbc9fe688d1ca62f5b02 168020 bio-rainbow-dbgsym_2.0.4+dfsg-2_i386.deb 4e6ee65ff8827d5828690a86cec72380d2449075a88134e0bcc502bc3abf78f9 5034 bio-rainbow_2.0.4+dfsg-2_i386.buildinfo c790291bf3334084e75ca1704117c447f42cd121b55c6336908673567e865093 63768 bio-rainbow_2.0.4+dfsg-2_i386.deb Files: 389643769033844f5f7b1032d1e4ff0f 168020 debug optional bio-rainbow-dbgsym_2.0.4+dfsg-2_i386.deb 522d59969076fdae43c213c0809b18a3 5034 science optional bio-rainbow_2.0.4+dfsg-2_i386.buildinfo 50053c846351b963cde43beb0ca6b570 63768 science optional bio-rainbow_2.0.4+dfsg-2_i386.deb Mon Feb 3 07:37:15 UTC 2025 I: diffoscope 287 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_5-49290.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.sjY4WVaG/bio-rainbow_2.0.4+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.sjY4WVaG/bio-rainbow_2.0.4+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.sjY4WVaG/bio-rainbow_2.0.4+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.sjY4WVaG/b1/bio-rainbow_2.0.4+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.sjY4WVaG/b2/bio-rainbow_2.0.4+dfsg-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 251ms CPU time consumed: 245ms Mon Feb 3 07:37:16 UTC 2025 I: diffoscope 287 found no differences in the changes files, and a .buildinfo file also exists. Mon Feb 3 07:37:16 UTC 2025 I: bio-rainbow from unstable built successfully and reproducibly on i386. Mon Feb 3 07:37:17 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Feb 3 07:37:17 UTC 2025 I: Submitting 8.0K b1/bio-rainbow_2.0.4+dfsg-2_i386.buildinfo.asc Mon Feb 3 07:37:18 UTC 2025 I: Submitting 8.0K b2/bio-rainbow_2.0.4+dfsg-2_i386.buildinfo.asc Mon Feb 3 07:37:19 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Feb 3 07:37:19 UTC 2025 I: Done submitting .buildinfo files. Mon Feb 3 07:37:19 UTC 2025 I: Removing signed bio-rainbow_2.0.4+dfsg-2_i386.buildinfo.asc files: removed './b1/bio-rainbow_2.0.4+dfsg-2_i386.buildinfo.asc' removed './b2/bio-rainbow_2.0.4+dfsg-2_i386.buildinfo.asc'