Sat Mar 8 08:16:08 UTC 2025 I: starting to build fastaq/unstable/i386 on jenkins on '2025-03-08 08:15'
Sat Mar 8 08:16:08 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/42657/console.log
Sat Mar 8 08:16:08 UTC 2025 I: Downloading source for unstable/fastaq=3.17.0-9
--2025-03-08 08:16:08-- http://deb.debian.org/debian/pool/main/f/fastaq/fastaq_3.17.0-9.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2147 (2.1K) [text/prs.lines.tag]
Saving to: ‘fastaq_3.17.0-9.dsc’
0K .. 100% 238M=0s
2025-03-08 08:16:08 (238 MB/s) - ‘fastaq_3.17.0-9.dsc’ saved [2147/2147]
Sat Mar 8 08:16:08 UTC 2025 I: fastaq_3.17.0-9.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: fastaq
Binary: fastaq
Architecture: all
Version: 3.17.0-9
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Jorge Soares <j.s.soares@gmail.com>, Sascha Steinbiss <satta@debian.org>
Homepage: https://github.com/sanger-pathogens/Fastaq
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/fastaq
Vcs-Git: https://salsa.debian.org/med-team/fastaq.git
Testsuite: autopkgtest
Testsuite-Triggers: python3, samtools
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-pytest, samtools, help2man
Package-List:
fastaq deb science optional arch=all
Checksums-Sha1:
7f62b54535d50f657173ac52717e048d3c6a06a3 71324 fastaq_3.17.0.orig.tar.gz
32d75c6b6f329da993822687216decfe7918bb44 5688 fastaq_3.17.0-9.debian.tar.xz
Checksums-Sha256:
bb63c03e4bdde92deb43469f8a93a7f440272e47adc8edb9d94cd5fa107fa746 71324 fastaq_3.17.0.orig.tar.gz
c67eb57777436a35ee9c30474dc297ed6614c2558d56c063e968ba9f85da6ccd 5688 fastaq_3.17.0-9.debian.tar.xz
Files:
4133971445c9c9037bc384d86cdfe4d8 71324 fastaq_3.17.0.orig.tar.gz
4171cb4b8742ba5ab4238439195d31c2 5688 fastaq_3.17.0-9.debian.tar.xz
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Sat Mar 8 08:16:08 UTC 2025 I: Checking whether the package is not for us
Sat Mar 8 08:16:08 UTC 2025 I: Starting 1st build on remote node ionos12-i386.debian.net.
Sat Mar 8 08:16:08 UTC 2025 I: Preparing to do remote build '1' on ionos12-i386.debian.net.
Sat Mar 8 08:17:14 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Mar 7 20:16:10 -12 2025
I: pbuilder-time-stamp: 1741421770
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [fastaq_3.17.0-9.dsc]
I: copying [./fastaq_3.17.0.orig.tar.gz]
I: copying [./fastaq_3.17.0-9.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./fastaq_3.17.0-9.dsc: unsupported subcommand
dpkg-source: info: extracting fastaq in fastaq-3.17.0
dpkg-source: info: unpacking fastaq_3.17.0.orig.tar.gz
dpkg-source: info: unpacking fastaq_3.17.0-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying tests
dpkg-source: info: applying remove-pkg_resources.patch
dpkg-source: info: applying python3.12-syntax.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/55142/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='0495091e002d46688bc46b73997c96a7'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='55142'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CXrJLtL7/pbuilderrc_2rAN --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CXrJLtL7/b1 --logfile b1/build.log fastaq_3.17.0-9.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/55142/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-pytest, samtools, help2man
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19769 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on samtools; however:
Package samtools is not installed.
pbuilder-satisfydepends-dummy depends on help2man; however:
Package help2man is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget
0 packages upgraded, 89 newly installed, 0 to remove and 0 not upgraded.
Need to get 35.2 MB of archives. After unpacking 129 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB]
Get: 2 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB]
Get: 3 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 4 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB]
Get: 5 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.2-2 [27.1 kB]
Get: 6 http://deb.debian.org/debian unstable/main i386 media-types all 12.0.0 [28.9 kB]
Get: 7 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB]
Get: 8 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-2 [259 kB]
Get: 9 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB]
Get: 10 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB]
Get: 11 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB]
Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB]
Get: 13 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.2-1 [745 kB]
Get: 14 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.2-2 [10.1 kB]
Get: 15 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.2-2 [28.1 kB]
Get: 16 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 17 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 18 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 19 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 20 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 21 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 22 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 23 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB]
Get: 24 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 25 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 26 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-7 [301 kB]
Get: 27 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB]
Get: 28 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 29 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB]
Get: 30 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 31 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 32 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-4 [539 kB]
Get: 33 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 34 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 35 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 36 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 37 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 38 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 39 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 40 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 41 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB]
Get: 42 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 43 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 44 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 45 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB]
Get: 46 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250306 [115 kB]
Get: 47 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB]
Get: 48 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB]
Get: 49 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB]
Get: 50 http://deb.debian.org/debian unstable/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB]
Get: 51 http://deb.debian.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB]
Get: 52 http://deb.debian.org/debian unstable/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB]
Get: 53 http://deb.debian.org/debian unstable/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB]
Get: 54 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB]
Get: 55 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB]
Get: 56 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 57 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-4 [354 kB]
Get: 58 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB]
Get: 59 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-9 [20.8 kB]
Get: 60 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-9 [61.2 kB]
Get: 61 http://deb.debian.org/debian unstable/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB]
Get: 62 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB]
Get: 63 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.8.0-1 [78.7 kB]
Get: 64 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.11.0-1 [163 kB]
Get: 65 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.11.0-1 [29.9 kB]
Get: 66 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB]
Get: 67 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB]
Get: 68 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB]
Get: 69 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.12.1-3 [411 kB]
Get: 70 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB]
Get: 71 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-2 [70.9 kB]
Get: 72 http://deb.debian.org/debian unstable/main i386 libhts3t64 i386 1.21+ds-1 [506 kB]
Get: 73 http://deb.debian.org/debian unstable/main i386 libncurses6 i386 6.5+20250216-2 [112 kB]
Get: 74 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 75 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 76 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 77 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.2-1 [37.3 kB]
Get: 78 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 79 http://deb.debian.org/debian unstable/main i386 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 80 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 81 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.8.0-1 [222 kB]
Get: 82 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 83 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 84 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.8.0-1 [724 kB]
Get: 85 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.1-1 [8276 B]
Get: 86 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB]
Get: 87 http://deb.debian.org/debian unstable/main i386 python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 88 http://deb.debian.org/debian unstable/main i386 python3-pytest all 8.3.4-1 [250 kB]
Get: 89 http://deb.debian.org/debian unstable/main i386 samtools i386 1.21-1 [700 kB]
Fetched 35.2 MB in 1s (53.2 MB/s)
Preconfiguring packages ...
Selecting previously unselected package liblocale-gettext-perl.
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Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up libngtcp2-crypto-gnutls8:i386 (1.11.0-1) ...
Setting up dh-python (6.20250306) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.1-1) ...
Setting up python3-pytest (8.3.4-1) ...
Setting up python3-typeguard (4.4.2-1) ...
Setting up libcurl3t64-gnutls:i386 (8.12.1-3) ...
Setting up debhelper (13.24.1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up libhts3t64:i386 (1.21+ds-1) ...
Setting up python3-pkg-resources (75.8.0-1) ...
Setting up python3-setuptools (75.8.0-1) ...
Setting up samtools (1.21-1) ...
Processing triggers for libc-bin (2.41-3) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastaq_3.17.0-9_source.changes
dpkg-buildpackage: info: source package fastaq
dpkg-buildpackage: info: source version 3.17.0-9
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/fastaq-3.17.0'
rm -rf build .pybuild doc pyfastaq.egg-info .pytest_cache
find . -name __pycache__ | xargs rm -rf
rm -rf /build/reproducible-path/fastaq-3.17.0/debian/man
make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/fastaq.substvars debian/files
rm -fr -- debian/fastaq/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
pybuild --configure -i python{version} -p 3.13
I: pybuild base:311: python3.13 setup.py config
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/fastaq-3.17.0'
dh_python3
D: dh_python3 dh_python3:180: version: 6.20250306
D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3']
D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None)
D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13)
D: dh_python3 debhelper:174: source=fastaq, binary packages=['fastaq']
D: dh_python3 dh_python3:205: processing package fastaq...
D: dh_python3 fs:338: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:103: generating dependencies for package fastaq
D: dh_python3 depends:253: D=set(); R=[]; S=[]; E=[], B=[]; RT=[]
dh_auto_build
pybuild --build -i python{version} -p 3.13
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq
copying pyfastaq/tasks.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq
copying pyfastaq/sequences.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq
copying pyfastaq/__init__.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq
copying pyfastaq/genetic_codes.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq
copying pyfastaq/caf.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq
copying pyfastaq/intervals.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq
copying pyfastaq/utils.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq
creating /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/trim_ends.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/translate.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/make_random_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/fasta_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/trim_Ns_at_end.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/expand_nucleotides.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/trim_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/strip_illumina_suffix.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/enumerate_names.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/count_sequences.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_orfs_gff.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/sequence_trim.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/reverse_complement.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/sort_by_size.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/split_by_base_count.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/interleave.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/acgtn_only.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/replace_bases.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/merge.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/search_for_seq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_tiling_bam.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/capillary_to_pairs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/version.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_fake_qual.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_unique_by_id.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/__init__.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/add_indels.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/chunker.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_mira_xml.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/filter.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/caf_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_perfect_reads.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/sort_by_name.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_boulderio.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_fasta.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/to_random_subset.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/get_ids.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
copying pyfastaq/runners/deinterleave.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners
running build_scripts
creating build/scripts-3.13
copying and adjusting scripts/fastaq -> build/scripts-3.13
changing mode of build/scripts-3.13/fastaq from 644 to 755
mkdir /build/reproducible-path/fastaq-3.17.0/doc
cd /build/reproducible-path/fastaq-3.17.0/doc
make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0'
rm -f debian/fastaq.debhelper.log
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/fastaq-3.17.0'
PYBUILD_SYSTEM=custom \
PYBUILD_TEST_ARGS="cd {dir}; {interpreter} -m pytest pyfastaq/tests/" dh_auto_test
pybuild --test -i python{version} -p 3.13
I: pybuild base:311: cd /build/reproducible-path/fastaq-3.17.0; python3.13 -m pytest pyfastaq/tests/
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/fastaq-3.17.0
plugins: typeguard-4.4.2
collected 125 items
pyfastaq/tests/caf_test.py . [ 0%]
pyfastaq/tests/intervals_test.py ............. [ 11%]
pyfastaq/tests/sequences_test.py ....................................... [ 42%]
........... [ 51%]
pyfastaq/tests/tasks_test.py ........................................... [ 85%]
.............. [ 96%]
pyfastaq/tests/utils_test.py .... [100%]
=============================== warnings summary ===============================
pyfastaq/__init__.py:3
/build/reproducible-path/fastaq-3.17.0/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'}
__version__ = Distribution().from_name('pyfastaq').version
pyfastaq/__init__.py:6
/build/reproducible-path/fastaq-3.17.0/pyfastaq/__init__.py:6: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
from pkg_resources import get_distribution
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 125 passed, 2 warnings in 0.57s ========================
rm -fr -- /tmp/dh-xdg-rundir-rBz4jFpi
make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
rm -f -- debian/fastaq.substvars
rm -fr -- debian/.debhelper/generated/fastaq/ debian/fastaq/ debian/tmp/
dh_auto_install --destdir=debian/fastaq/ -O--buildsystem=pybuild
install -m0755 -d /build/reproducible-path/fastaq-3.17.0/debian/fastaq
pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/fastaq-3.17.0/debian/fastaq
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/fastaq-3.17.0/debian/fastaq
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running build_scripts
running install_lib
creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/tasks.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/sequences.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq
creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/translate.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/reverse_complement.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/interleave.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/merge.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/version.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/__init__.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/add_indels.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/chunker.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/filter.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/get_ids.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/__init__.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/genetic_codes.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/caf.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/intervals.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq
copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.13_fastaq/build/pyfastaq/utils.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/tasks.py to tasks.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/sequences.py to sequences.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/translate.py to translate.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/merge.py to merge.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/version.py to version.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/filter.py to filter.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/caf.py to caf.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/intervals.py to intervals.cpython-313.pyc
byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq/utils.py to utils.cpython-313.pyc
running install_egg_info
running egg_info
creating pyfastaq.egg-info
writing pyfastaq.egg-info/PKG-INFO
writing dependency_links to pyfastaq.egg-info/dependency_links.txt
writing top-level names to pyfastaq.egg-info/top_level.txt
writing manifest file 'pyfastaq.egg-info/SOURCES.txt'
reading manifest file 'pyfastaq.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'pyfastaq.egg-info/SOURCES.txt'
Copying pyfastaq.egg-info to /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.13/dist-packages/pyfastaq-3.17.0.egg-info
Skipping SOURCES.txt
running install_scripts
creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/bin
copying build/scripts-3.13/fastaq -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/bin
changing mode of /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/bin/fastaq to 755
dh_installdocs -O--buildsystem=pybuild
install -m0755 -d debian/fastaq/usr/share/doc/fastaq
install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright
dh_installchangelogs -O--buildsystem=pybuild
install -m0755 -d debian/fastaq/usr/share/doc/fastaq
install -p -m0644 debian/.debhelper/generated/fastaq/dh_installchangelogs.dch.trimmed debian/fastaq/usr/share/doc/fastaq/changelog.Debian
rm -f debian/fastaq.debhelper.log
debian/rules override_dh_installman
make[1]: Entering directory '/build/reproducible-path/fastaq-3.17.0'
mkdir -p /build/reproducible-path/fastaq-3.17.0/debian/man
PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \
-n 'FASTA and FASTQ file manipulation tools' \
--no-discard-stderr \
--version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq
sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1
scripts/fastaq 2>&1 | tail -n +13 | debian/make_man
dh_installman --
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1
install -m0755 -d debian/fastaq/usr/share/man/man1/
install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1
man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1
mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1
mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1
mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1
mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1
mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1
mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1
mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1
mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1
mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1
mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1
mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1
mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1
mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1
mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1
mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1
mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1
mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1
mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1
mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1
mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1
mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1
mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1
mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1
mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1
mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1
mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1
mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1
mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1
mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1
mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1
mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1
mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1
chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1
make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0'
dh_python3 -O--buildsystem=pybuild
D: dh_python3 dh_python3:180: version: 6.20250306
D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild'])
D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13)
D: dh_python3 debhelper:174: source=fastaq, binary packages=['fastaq']
D: dh_python3 dh_python3:205: processing package fastaq...
D: dh_python3 fs:50: moving files from debian/fastaq/usr/lib/python3.13/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/
D: dh_python3 fs:338: package fastaq details = {'requires.txt': set(), 'egg-info': {'debian/fastaq/usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:103: generating dependencies for package fastaq
D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
cd debian/fastaq
chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1
gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1
cd '/build/reproducible-path/fastaq-3.17.0'
dh_fixperms -O--buildsystem=pybuild
find debian/fastaq ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/fastaq/usr/share/doc -type f -a -true -a ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/fastaq/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/fastaq/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/fastaq -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/fastaq/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/fastaq/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
install -m0755 -d debian/fastaq/DEBIAN
printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/postinst
cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst
chmod 0755 -- debian/fastaq/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/prerm
cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm
chmod 0755 -- debian/fastaq/DEBIAN/prerm
dh_gencontrol -O--buildsystem=pybuild
install -m0755 -d debian/fastaq/DEBIAN
echo misc:Depends= >> debian/fastaq.substvars
echo misc:Pre-Depends= >> debian/fastaq.substvars
dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -cdebian/control -Pdebian/fastaq
chmod 0644 -- debian/fastaq/DEBIAN/control
dh_md5sums -O--buildsystem=pybuild
install -m0755 -d debian/fastaq/DEBIAN
cd debian/fastaq >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/fastaq/DEBIAN/md5sums
dh_builddeb -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/fastaq ..
dpkg-deb: building package 'fastaq' in '../fastaq_3.17.0-9_all.deb'.
dpkg-genbuildinfo --build=binary -O../fastaq_3.17.0-9_i386.buildinfo
dpkg-genchanges --build=binary -O../fastaq_3.17.0-9_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/55142 and its subdirectories
I: Current time: Fri Mar 7 20:17:13 -12 2025
I: pbuilder-time-stamp: 1741421833
Sat Mar 8 08:17:14 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net.
Sat Mar 8 08:17:14 UTC 2025 I: Preparing to do remote build '2' on ionos16-i386.debian.net.
Sat Mar 8 08:17:59 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net.
Sat Mar 8 08:18:00 UTC 2025 I: fastaq_3.17.0-9_i386.changes:
Format: 1.8
Date: Fri, 06 Dec 2024 21:44:29 +0100
Source: fastaq
Binary: fastaq
Architecture: all
Version: 3.17.0-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
fastaq - FASTA and FASTQ file manipulation tools
Closes: 1085573
Changes:
fastaq (3.17.0-9) unstable; urgency=medium
.
* Fix Python3.12 string syntax
Closes: #1085573
Checksums-Sha1:
d0a2f418aa68f6a30d89b518d1ce587e3b477003 47824 fastaq_3.17.0-9_all.deb
af67b86ab3f5136166e0852081ba6b0f5c7e8c13 6424 fastaq_3.17.0-9_i386.buildinfo
Checksums-Sha256:
45c37097851e978325d5b5cfc55c3aeefe8c327759d28fd72668e4a916b32ca2 47824 fastaq_3.17.0-9_all.deb
c9d24929ccdf7f115bf0e53ea61319f65d4530aa4a4ff1d875b9c8ab9004308c 6424 fastaq_3.17.0-9_i386.buildinfo
Files:
616bf5a47e35264f76ce73b731548530 47824 science optional fastaq_3.17.0-9_all.deb
f63b6d44925ffa88c9144517e4afb56e 6424 science optional fastaq_3.17.0-9_i386.buildinfo
Sat Mar 8 08:18:01 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_12-42657.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CXrJLtL7/fastaq_3.17.0-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CXrJLtL7/fastaq_3.17.0-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CXrJLtL7/fastaq_3.17.0-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CXrJLtL7/b1/fastaq_3.17.0-9_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.CXrJLtL7/b2/fastaq_3.17.0-9_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.004s)
0.004s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 263ms
CPU time consumed: 261ms
Sat Mar 8 08:18:02 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Sat Mar 8 08:18:02 UTC 2025 I: fastaq from unstable built successfully and reproducibly on i386.
Sat Mar 8 08:18:03 UTC 2025 I: Submitting .buildinfo files to external archives:
Sat Mar 8 08:18:03 UTC 2025 I: Submitting 8.0K b1/fastaq_3.17.0-9_i386.buildinfo.asc
Sat Mar 8 08:18:04 UTC 2025 I: Submitting 8.0K b2/fastaq_3.17.0-9_i386.buildinfo.asc
Sat Mar 8 08:18:05 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Mar 8 08:18:05 UTC 2025 I: Done submitting .buildinfo files.
Sat Mar 8 08:18:05 UTC 2025 I: Removing signed fastaq_3.17.0-9_i386.buildinfo.asc files:
removed './b1/fastaq_3.17.0-9_i386.buildinfo.asc'
removed './b2/fastaq_3.17.0-9_i386.buildinfo.asc'