Fri Mar 21 20:32:31 UTC 2025 I: starting to build pilon/unstable/i386 on jenkins on '2025-03-21 20:32'
Fri Mar 21 20:32:31 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/49971/console.log
Fri Mar 21 20:32:31 UTC 2025 I: Downloading source for unstable/pilon=1.24-4
--2025-03-21 20:32:31-- http://deb.debian.org/debian/pool/main/p/pilon/pilon_1.24-4.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1970 (1.9K) [text/prs.lines.tag]
Saving to: ‘pilon_1.24-4.dsc’
0K . 100% 249M=0s
2025-03-21 20:32:31 (249 MB/s) - ‘pilon_1.24-4.dsc’ saved [1970/1970]
Fri Mar 21 20:32:32 UTC 2025 I: pilon_1.24-4.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pilon
Binary: pilon
Architecture: all
Version: 1.24-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Pierre Gruet <pgt@debian.org>
Homepage: https://github.com/broadinstitute/pilon/wiki
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/pilon
Vcs-Git: https://salsa.debian.org/med-team/pilon.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), javahelper, scala, libhtsjdk-java
Package-List:
pilon deb science optional arch=all
Checksums-Sha1:
3384dbdb47ae92386bc3effe38d5725643c68d52 41428 pilon_1.24.orig.tar.xz
86b0c7baf1ffc75a58a67a15f550e30dbec25040 84620 pilon_1.24-4.debian.tar.xz
Checksums-Sha256:
b8c7507ef4b86557ad218c40da7ced6caa2b233daffff1485418016c9484e2be 41428 pilon_1.24.orig.tar.xz
79912e18b19179cdfd1e0dd1ed5e2a92b5cb16b452cc4a9077b6c7d905cc0138 84620 pilon_1.24-4.debian.tar.xz
Files:
e90ce58aefb1bd4def61efe064c5106f 41428 pilon_1.24.orig.tar.xz
8d36b7d4a656becb0cbf7b5fb22a3352 84620 pilon_1.24-4.debian.tar.xz
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Fri Mar 21 20:32:32 UTC 2025 I: Checking whether the package is not for us
Fri Mar 21 20:32:32 UTC 2025 I: Starting 1st build on remote node ionos6-i386.debian.net.
Fri Mar 21 20:32:32 UTC 2025 I: Preparing to do remote build '1' on ionos6-i386.debian.net.
Fri Mar 21 20:32:49 UTC 2025 I: Deleting $TMPDIR on ionos6-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Apr 23 14:55:33 -12 2026
I: pbuilder-time-stamp: 1776999333
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [pilon_1.24-4.dsc]
I: copying [./pilon_1.24.orig.tar.xz]
I: copying [./pilon_1.24-4.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./pilon_1.24-4.dsc: unsupported subcommand
dpkg-source: info: extracting pilon in pilon-1.24
dpkg-source: info: unpacking pilon_1.24.orig.tar.xz
dpkg-source: info: unpacking pilon_1.24-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying build_with_scala2_11.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/73224/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='d3c0ea8beb8945a29d082cc27a16534b'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='73224'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dFaCGxQI/pbuilderrc_xMRm --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dFaCGxQI/b1 --logfile b1/build.log pilon_1.24-4.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://213.165.73.152:3128'
I: uname -a
Linux ionos6-i386 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/73224/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), javahelper, scala, libhtsjdk-java
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19791 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on javahelper; however:
Package javahelper is not installed.
pbuilder-satisfydepends-dummy depends on scala; however:
Package scala is not installed.
pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however:
Package libhtsjdk-java is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gpgv{a} groff-base{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libffi8{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgcrypt20{a} libgnutls30t64{a} libgpg-error0{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu76{a} libidn2-0{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjansi-native-java{a} libjansi1-java{a} libjline2-java{a} libjpeg62-turbo{a} libksba8{a} liblcms2-2{a} libldap2{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnspr4{a} libnss3{a} libp11-kit0{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsub-quote-perl{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} scala{a} scala-library{a} scala-parser-combinators{a} scala-xml{a} sensible-utils{a} sopv-gpgv{a} tzdata{a} wdiff{a}
The following packages are RECOMMENDED but will NOT be installed:
curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client libarchive-cpio-perl libasound2t64 libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libgpg-error-l10n libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl liboss4-salsa-asound2 libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx lzip pristine-tar python3-apt python3-argcomplete python3-debian python3-magic python3-requests python3-unidiff python3-xdg sopv-doc strace unzip wget
0 packages upgraded, 132 newly installed, 0 to remove and 0 not upgraded.
Need to get 110 MB of archives. After unpacking 374 MB will be used.
The following packages have unmet dependencies:
pbuilder-satisfydepends-dummy : Depends: libhtsjdk-java but it is not installable
Unable to resolve dependencies! Giving up...
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gpgv{a} groff-base{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libffi8{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgcrypt20{a} libgnutls30t64{a} libgpg-error0{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu76{a} libidn2-0{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjansi-native-java{a} libjansi1-java{a} libjline2-java{a} libjpeg62-turbo{a} libksba8{a} liblcms2-2{a} libldap2{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnspr4{a} libnss3{a} libp11-kit0{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsub-quote-perl{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} scala{a} scala-library{a} scala-parser-combinators{a} scala-xml{a} sensible-utils{a} sopv-gpgv{a} tzdata{a} wdiff{a}
The following packages are RECOMMENDED but will NOT be installed:
curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client libarchive-cpio-perl libasound2t64 libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libgpg-error-l10n libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl liboss4-salsa-asound2 libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx lzip pristine-tar python3-apt python3-argcomplete python3-debian python3-magic python3-requests python3-unidiff python3-xdg sopv-doc strace unzip wget
0 packages upgraded, 132 newly installed, 0 to remove and 0 not upgraded.
Need to get 110 MB of archives. After unpacking 374 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/73224 and its subdirectories
Fri Mar 21 20:32:50 UTC 2025 W: No second build log, what happened?
Fri Mar 21 20:32:50 UTC 2025 W: Downloading the build dependencies failed
Fri Mar 21 20:32:50 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case.
Fri Mar 21 20:32:50 UTC 2025 W: Network problems are automatically rescheduled after some hours.