Sat Mar 22 11:22:51 UTC 2025 I: starting to build pinfish/unstable/i386 on jenkins on '2025-03-22 11:22' Sat Mar 22 11:22:51 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/61292/console.log Sat Mar 22 11:22:51 UTC 2025 I: Downloading source for unstable/pinfish=0.1.0+ds-4 --2025-03-22 11:22:52-- http://deb.debian.org/debian/pool/main/p/pinfish/pinfish_0.1.0%2bds-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2529 (2.5K) [text/prs.lines.tag] Saving to: ‘pinfish_0.1.0+ds-4.dsc’ 0K .. 100% 383M=0s 2025-03-22 11:22:52 (383 MB/s) - ‘pinfish_0.1.0+ds-4.dsc’ saved [2529/2529] Sat Mar 22 11:22:52 UTC 2025 I: pinfish_0.1.0+ds-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pinfish Binary: pinfish, pinfish-examples Architecture: any all Version: 0.1.0+ds-4 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/nanoporetech/pinfish Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pinfish Vcs-Git: https://salsa.debian.org/med-team/pinfish.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools Package-List: pinfish deb science optional arch=any pinfish-examples deb science optional arch=all Checksums-Sha1: 72cd9579ffc7d2edd6ad5429c3e934fbe3302746 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz f60646b7255e280e7c3c5487f29707c8de208970 5054956 pinfish_0.1.0+ds.orig.tar.xz bbecc63cd114aa32541947d5c24458adc07b30fb 6600 pinfish_0.1.0+ds-4.debian.tar.xz Checksums-Sha256: 40957e398ab9bebdc89fe69dbef1c816da544e69a6aeed9c04371430f61f53bb 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz c8213acc3f88d9e1294b9f9014a28b8fd410ebe0aab4793c7bb7263e7e465e4d 5054956 pinfish_0.1.0+ds.orig.tar.xz 244fe376c04deed5bbf98824576c5cfc7d2b819e1a7a595bf90207573681312d 6600 pinfish_0.1.0+ds-4.debian.tar.xz Files: f76133bed3fba383e81cc39b73cccdb1 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz 70d87d84ead55e6112f068425ba60c56 5054956 pinfish_0.1.0+ds.orig.tar.xz 001d865b95bc9df10f0a0b25e5bda457 6600 pinfish_0.1.0+ds-4.debian.tar.xz Go-Import-Path: github.com/nanoporetech/pinfish -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWg8XkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHtyQ//bm6KvCO0/OxjjN4EE1tiUEJRQgj4p8TL WAI4JLFdz35OP8eopj4ABpao7I9ZCguAIwqXSRVkBw9XvwyUeK230J/+OlX9C674 ViHVFEjxzH0y2rEiKn2T8P4A/esuU5GE8p8hP2okqVwc4+T/hbYEqV5N6KfEopYs nI+WC/3cqTWSKxe/0UnmpNUqUe2FCdRQrj05ZfR6nIvtUghlZNKWIh7Jouk5heKp I5hXk3Vlm0pL+LvqaMjyWfLB8DUGp1l7kunqGKp0fp0pEm4Rvl93Spzrfdi7FRJv OCYV4a0VtTiWH+b3Ic7487dDy0Ibp+4f+kviCTp/lc5DlSNoXFzWzkYBvFZT1j5y gN2X0wV3kN0WHTJ5FEtvhBLCRS0T1Mjzdr5gmg/nrKnbUdEpQmSAuv7Z5i+Tlfqn 60POIAp5MPbuorpxNWI1y6v1nR/8wdVIIMHZTHeedHv8hDaY2EY62G7Cw3t0sJH8 lh6xgC+WpclzvAyCUwxL3hB8XXlAMp6OJ/QCsy2c7ozdMR0IK7aB/L4XX6MMaQHh 4gO6SBzUC50PAUkwHx3/UioBf8yq6O3wgwfNB7z4uqBKLo4P1ZFl7rvKAXsoOwo5 2cjKfoT0S5YZqtZsJcfhiop5j4wFkQbsRCjfih9jbjT5nO+xRnXeoWq/kC+Pc/4O LxWkiVagcFc= =HpBN -----END PGP SIGNATURE----- Sat Mar 22 11:22:52 UTC 2025 I: Checking whether the package is not for us Sat Mar 22 11:22:52 UTC 2025 I: Starting 1st build on remote node ionos6-i386.debian.net. Sat Mar 22 11:22:52 UTC 2025 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Sat Mar 22 11:25:06 UTC 2025 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 24 05:45:54 -12 2026 I: pbuilder-time-stamp: 1777052754 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pinfish_0.1.0+ds-4.dsc] I: copying [./pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz] I: copying [./pinfish_0.1.0+ds.orig.tar.xz] I: copying [./pinfish_0.1.0+ds-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pinfish_0.1.0+ds-4.dsc: unsupported subcommand dpkg-source: info: extracting pinfish in pinfish-0.1.0+ds dpkg-source: info: unpacking pinfish_0.1.0+ds.orig.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-gonum-stat-usage.patch dpkg-source: info: applying do-not-overflow-int.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/71421/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='470aa50eed674199a48cb4d831959369' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='71421' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XObMWHOe/pbuilderrc_lYvj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XObMWHOe/b1 --logfile b1/build.log pinfish_0.1.0+ds-4.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/71421/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19793 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-golang; however: Package dh-golang is not installed. pbuilder-satisfydepends-dummy depends on golang-any; however: Package golang-any is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-biogo-dev; however: Package golang-github-biogo-biogo-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however: Package golang-github-biogo-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-google-uuid-dev; however: Package golang-github-google-uuid-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.24-go{a} golang-1.24-src{a} golang-any{a} golang-github-biogo-biogo-dev{a} golang-github-biogo-hts-dev{a} golang-github-creack-pty-dev{a} golang-github-google-uuid-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-yuin-goldmark-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu76{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkgconf publicsuffix wget 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 85.0 MB of archives. After unpacking 427 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.46-3 [337 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.46-3 [117 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 file i386 1:5.46-3 [43.4 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-7 [301 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libicu76 i386 76.1-3 [9893 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.3+b1 [734 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 dh-golang all 1.63 [24.4 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 golang-1.24-src all 1.24.1-1 [21.2 MB] Get: 33 http://deb.debian.org/debian unstable/main i386 golang-1.24-go i386 1.24.1-1 [26.8 MB] Get: 34 http://deb.debian.org/debian unstable/main i386 golang-src all 2:1.24~2 [5136 B] Get: 35 http://deb.debian.org/debian unstable/main i386 golang-go i386 2:1.24~2 [44.3 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 golang-any i386 2:1.24~2 [5216 B] Get: 37 http://deb.debian.org/debian unstable/main i386 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 golang-github-biogo-hts-dev all 1.4.5+dfsg1-2 [319 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 golang-golang-x-mod-dev all 0.19.0-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 golang-golang-x-sys-dev all 0.22.0-1 [431 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 golang-github-yuin-goldmark-dev all 1.7.4-1 [113 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 golang-golang-x-term-dev all 0.22.0-1 [14.8 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 golang-golang-x-text-dev all 0.22.0-1 [3995 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 golang-golang-x-crypto-dev all 1:0.25.0-1 [1682 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 golang-golang-x-net-dev all 1:0.27.0-1 [898 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 golang-golang-x-sync-dev all 0.7.0-1 [19.0 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 golang-golang-x-tools-dev all 1:0.25.0+ds-1 [1608 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-2 [31.2 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 golang-github-biogo-biogo-dev all 1.0.4-1 [189 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 golang-github-google-uuid-dev all 1.6.0-1 [20.6 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1+b1 [24.6 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libidn2-0 i386 2.3.8-2 [110 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-5 [35.3 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-5 [84.3 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 65 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-5 [355 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-5 [149 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-9 [20.8 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-9 [61.2 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libldap2 i386 2.6.9+dfsg-2 [206 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.8.0-1 [78.7 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.11.0-1 [163 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.11.0-1 [29.9 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.13.0~rc2-2 [419 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-2 [70.9 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libhts3t64 i386 1.21+ds-1 [506 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libncurses6 i386 6.5+20250216-2 [112 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 samtools i386 1.21-1 [700 kB] Fetched 85.0 MB in 2s (44.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19793 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-3_i386.deb ... Unpacking libmagic-mgc (1:5.46-3) ... Selecting previously unselected package libmagic1t64:i386. 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Setting up golang-1.24-src (1.24.1-1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up bsdextrautils (2.40.4-5) ... Setting up golang-github-creack-pty-dev (1.1.21-1) ... Setting up libmagic-mgc (1:5.46-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:i386 (1.1.0-2+b7) ... Setting up golang-golang-x-sys-dev (0.22.0-1) ... Setting up libmagic1t64:i386 (1:5.46-3) ... Setting up libnghttp2-14:i386 (1.64.0-1) ... Setting up libdeflate0:i386 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up golang-golang-x-term-dev (0.22.0-1) ... Setting up libcom-err2:i386 (1.47.2-1+b1) ... Setting up file (1:5.46-3) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-5) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20220109.1) ... Setting up golang-github-kr-text-dev (0.2.0-2) ... Setting up golang-github-yuin-goldmark-dev (1.7.4-1) ... Setting up libncurses6:i386 (6.5+20250216-2) ... Setting up libunistring5:i386 (1.3-1) ... Setting up golang-golang-x-sync-dev (0.7.0-1) ... Setting up golang-golang-x-mod-dev (0.19.0-1) ... Setting up autopoint (0.23.1-1) ... Setting up golang-1.24-go (1.24.1-1) ... Setting up libk5crypto3:i386 (1.21.3-5) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:i386 (1.8.0-1) ... Setting up libffi8:i386 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up golang-golang-x-text-dev (0.22.0-1) ... Setting up golang-github-google-uuid-dev (1.6.0-1) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libtasn1-6:i386 (4.20.0-2) ... Setting up libngtcp2-16:i386 (1.11.0-1) ... Setting up golang-golang-x-crypto-dev (1:0.25.0-1) ... Setting up libkrb5-3:i386 (1.21.3-5) ... Setting up libicu76:i386 (76.1-3) ... Setting up libssh2-1t64:i386 (1.11.1-1) ... Setting up golang-src (2:1.24~2) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up libldap2:i386 (2.6.9+dfsg-2) ... Setting up golang-github-ulikunitz-xz-dev (0.5.6-2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up golang-go:i386 (2:1.24~2) ... Setting up libidn2-0:i386 (2.3.8-2) ... Setting up golang-any:i386 (2:1.24~2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:i386 (0.25.5-3) ... Setting up libgssapi-krb5-2:i386 (1.21.3-5) ... Setting up golang-github-biogo-hts-dev (1.4.5+dfsg1-2) ... Setting up golang-golang-x-net-dev (1:0.27.0-1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libgnutls30t64:i386 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ... Setting up golang-golang-x-tools-dev (1:0.25.0+ds-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up golang-github-rogpeppe-go-internal-dev (1.12.0-3) ... Setting up libngtcp2-crypto-gnutls8:i386 (1.11.0-1) ... Setting up golang-github-kr-pretty-dev (0.3.1-1) ... Setting up libcurl3t64-gnutls:i386 (8.13.0~rc2-2) ... Setting up debhelper (13.24.1) ... Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-2) ... Setting up golang-github-biogo-biogo-dev (1.0.4-1) ... Setting up libhts3t64:i386 (1.21+ds-1) ... Setting up dh-golang (1.63) ... Setting up samtools (1.21-1) ... Processing triggers for libc-bin (2.41-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pinfish-0.1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pinfish_0.1.0+ds-4_source.changes dpkg-buildpackage: info: source package pinfish dpkg-buildpackage: info: source version 0.1.0+ds-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --builddirectory=_build --buildsystem=golang --with=golang debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_clean find . -name "*.bam" -delete make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang dh_clean -O--builddirectory=_build -O--buildsystem=golang debian/rules binary dh binary --builddirectory=_build --buildsystem=golang --with=golang dh_update_autotools_config -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang cd _build && go install -trimpath -v -p 22 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff crypto/internal/fips140/alias unicode/utf8 internal/unsafeheader internal/coverage/rtcov internal/profilerecord internal/goos cmp encoding internal/byteorder internal/goarch math/bits internal/asan internal/godebugs internal/msan internal/itoa crypto/internal/boring/sig internal/goexperiment internal/cpu unicode internal/runtime/atomic unicode/utf16 internal/runtime/syscall sync/atomic internal/nettrace log/internal internal/runtime/math internal/runtime/sys internal/abi crypto/internal/fips140deps/byteorder internal/chacha8rand math internal/runtime/exithook crypto/internal/fips140deps/cpu internal/bytealg internal/stringslite internal/race internal/sync internal/runtime/maps runtime crypto/internal/fips140/subtle internal/reflectlite iter weak sync maps slices crypto/subtle errors sort math/rand/v2 path vendor/golang.org/x/net/dns/dnsmessage internal/oserror strconv internal/testlog internal/singleflight io internal/bisect unique syscall runtime/cgo container/heap hash internal/godebug crypto/internal/randutil strings bytes hash/crc32 crypto net/netip reflect crypto/internal/fips140deps/godebug math/rand github.com/biogo/biogo/feat bufio crypto/internal/fips140 crypto/internal/fips140/sha256 crypto/internal/fips140/sha3 crypto/internal/fips140/sha512 github.com/biogo/biogo/io/featio github.com/biogo/biogo/feat/gene internal/syscall/execenv internal/syscall/unix time crypto/internal/fips140/hmac crypto/internal/fips140/check crypto/internal/fips140/aes context io/fs internal/poll internal/filepathlite os internal/fmtsort encoding/binary encoding/base64 crypto/internal/sysrand fmt path/filepath io/ioutil net crypto/internal/entropy crypto/internal/fips140/drbg os/exec crypto/internal/fips140only crypto/internal/fips140/aes/gcm crypto/md5 crypto/cipher crypto/internal/boring encoding/hex flag log database/sql/driver github.com/biogo/biogo/alphabet crypto/sha1 net/url text/tabwriter encoding/csv compress/flate encoding/json math/big github.com/biogo/biogo/seq github.com/biogo/biogo/feat/genome github.com/biogo/biogo/io/seqio github.com/biogo/biogo/seq/linear compress/gzip github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/hts/bgzf runtime/pprof github.com/biogo/biogo/io/featio/gff github.com/biogo/hts/bgzf/index github.com/biogo/hts/internal github.com/biogo/hts/sam crypto/rand github.com/biogo/hts/bam github.com/nanoporetech/pinfish/spliced_bam2gff github.com/nanoporetech/pinfish/polish_clusters github.com/google/uuid github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/cluster_gff debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_test cd _build && go test -vet=off -v -p 22 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff ? github.com/nanoporetech/pinfish/cluster_gff [no test files] ? github.com/nanoporetech/pinfish/collapse_partials [no test files] ? github.com/nanoporetech/pinfish/polish_clusters [no test files] ? github.com/nanoporetech/pinfish/spliced_bam2gff [no test files] cat debian-tests-data/sirv_e0_sorted.sam| samtools view -Sb - > polish_clusters/test_data/sirv_e0_sorted.bam cat debian-tests-data/sirv_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_errors_gmap.bam cat debian-tests-data/sirv_no_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_no_errors_gmap.bam cat debian-tests-data/sirv_simulated.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_simulated.bam make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_install -- --no-source cd _build && mkdir -p /build/reproducible-path/pinfish-0.1.0\+ds/debian/tmp/usr cd _build && cp -r bin /build/reproducible-path/pinfish-0.1.0\+ds/debian/tmp/usr make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_install -O--builddirectory=_build -O--buildsystem=golang dh_installdocs -O--builddirectory=_build -O--buildsystem=golang dh_installchangelogs -O--builddirectory=_build -O--buildsystem=golang dh_installman -O--builddirectory=_build -O--buildsystem=golang dh_installsystemduser -O--builddirectory=_build -O--buildsystem=golang dh_perl -O--builddirectory=_build -O--buildsystem=golang dh_link -O--builddirectory=_build -O--buildsystem=golang dh_strip_nondeterminism -O--builddirectory=_build -O--buildsystem=golang dh_compress -O--builddirectory=_build -O--buildsystem=golang dh_fixperms -O--builddirectory=_build -O--buildsystem=golang dh_missing -O--builddirectory=_build -O--buildsystem=golang dh_strip -a -O--builddirectory=_build -O--buildsystem=golang dh_makeshlibs -a -O--builddirectory=_build -O--buildsystem=golang dh_shlibdeps -a -O--builddirectory=_build -O--buildsystem=golang dh_installdeb -O--builddirectory=_build -O--buildsystem=golang dh_golang -O--builddirectory=_build -O--buildsystem=golang dh_gencontrol -O--builddirectory=_build -O--buildsystem=golang dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined dpkg-gencontrol: warning: Depends field of package pinfish-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--builddirectory=_build -O--buildsystem=golang dh_builddeb -O--builddirectory=_build -O--buildsystem=golang dpkg-deb: building package 'pinfish' in '../pinfish_0.1.0+ds-4_i386.deb'. dpkg-deb: building package 'pinfish-examples' in '../pinfish-examples_0.1.0+ds-4_all.deb'. dpkg-deb: building package 'pinfish-dbgsym' in '../pinfish-dbgsym_0.1.0+ds-4_i386.deb'. dpkg-genbuildinfo --build=binary -O../pinfish_0.1.0+ds-4_i386.buildinfo dpkg-genchanges --build=binary -O../pinfish_0.1.0+ds-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/71421 and its subdirectories I: Current time: Fri Apr 24 05:48:04 -12 2026 I: pbuilder-time-stamp: 1777052884 Sat Mar 22 11:25:07 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Sat Mar 22 11:25:07 UTC 2025 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Sat Mar 22 11:28:16 UTC 2025 I: Deleting $TMPDIR on ionos2-i386.debian.net. Sat Mar 22 11:28:17 UTC 2025 I: pinfish_0.1.0+ds-4_i386.changes: Format: 1.8 Date: Fri, 12 Jan 2024 07:23:48 +0100 Source: pinfish Binary: pinfish pinfish-dbgsym pinfish-examples Architecture: i386 all Version: 0.1.0+ds-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pinfish - Collection of tools to annotate genomes using long read transcrip pinfish-examples - Examples and test data for pinfish Closes: 1048260 Changes: pinfish (0.1.0+ds-4) unstable; urgency=medium . * Team upload. * Cleanup bam files from dh_auto_test Closes: #1048260 * Standards-Version: 4.6.2 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * No tab in license text (routine-update) Add missing ${misc:Built-Using} to Built-Using on pinfish. Apply multi-arch hints. . + pinfish-examples: Add Multi-Arch: foreign. Checksums-Sha1: da5598f8323b41666f559049145310e2d4155b22 3834820 pinfish-dbgsym_0.1.0+ds-4_i386.deb b115ce00249a49753f74da1eb33f0c8ba490abc2 179449528 pinfish-examples_0.1.0+ds-4_all.deb cb87a9e07770b9427e989380d6eb5325f7a8f52b 6967 pinfish_0.1.0+ds-4_i386.buildinfo 2579e1905cd59be81a2d912a7b1e3a1acb9656e5 1432480 pinfish_0.1.0+ds-4_i386.deb Checksums-Sha256: ef98dd0cf7bdc2e1c2008b6426bd29b532bcce0a8793ec2019a492c134467e42 3834820 pinfish-dbgsym_0.1.0+ds-4_i386.deb 76105600fe627552fa91ba396cfdf758aa666dfc3f35d681e4e19ae1d08d0b4b 179449528 pinfish-examples_0.1.0+ds-4_all.deb a2159a45a40ea2d37df32af1bbf7062373c39543ea47f84f1a6cd692099b4c27 6967 pinfish_0.1.0+ds-4_i386.buildinfo a258e11031e59af5937c646f1963b6f40646cc32eea2be9be9b01f2a455080ed 1432480 pinfish_0.1.0+ds-4_i386.deb Files: f3910ee9980be9aeb9215dd7899d3247 3834820 debug optional pinfish-dbgsym_0.1.0+ds-4_i386.deb cebe9129fb0284734184c4b693bf386b 179449528 science optional pinfish-examples_0.1.0+ds-4_all.deb c84039b5fd76af21fceeca932de7e00e 6967 science optional pinfish_0.1.0+ds-4_i386.buildinfo 238499164bb9df61ecc855b61e15ee08 1432480 science optional pinfish_0.1.0+ds-4_i386.deb Sat Mar 22 11:28:18 UTC 2025 I: diffoscope 291 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_2-61292.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.XObMWHOe/pinfish_0.1.0+ds-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.XObMWHOe/pinfish_0.1.0+ds-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.XObMWHOe/pinfish_0.1.0+ds-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.XObMWHOe/b1/pinfish_0.1.0+ds-4_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.XObMWHOe/b2/pinfish_0.1.0+ds-4_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 225ms CPU time consumed: 225ms Sat Mar 22 11:28:19 UTC 2025 I: diffoscope 291 found no differences in the changes files, and a .buildinfo file also exists. Sat Mar 22 11:28:19 UTC 2025 I: pinfish from unstable built successfully and reproducibly on i386. Sat Mar 22 11:28:20 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Mar 22 11:28:20 UTC 2025 I: Submitting 8.0K b1/pinfish_0.1.0+ds-4_i386.buildinfo.asc Sat Mar 22 11:28:21 UTC 2025 I: Submitting 8.0K b2/pinfish_0.1.0+ds-4_i386.buildinfo.asc Sat Mar 22 11:28:22 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Mar 22 11:28:22 UTC 2025 I: Done submitting .buildinfo files. Sat Mar 22 11:28:22 UTC 2025 I: Removing signed pinfish_0.1.0+ds-4_i386.buildinfo.asc files: removed './b1/pinfish_0.1.0+ds-4_i386.buildinfo.asc' removed './b2/pinfish_0.1.0+ds-4_i386.buildinfo.asc'