Tue Dec 31 04:02:51 UTC 2024 I: starting to build plasmidomics/unstable/i386 on jenkins on '2024-12-31 04:02'
Tue Dec 31 04:02:51 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/49944/console.log
Tue Dec 31 04:02:51 UTC 2024 I: Downloading source for unstable/plasmidomics=0.2.0-10
--2024-12-31 04:02:52-- http://deb.debian.org/debian/pool/main/p/plasmidomics/plasmidomics_0.2.0-10.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
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Saving to: ‘plasmidomics_0.2.0-10.dsc’
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2024-12-31 04:02:52 (309 MB/s) - ‘plasmidomics_0.2.0-10.dsc’ saved [2221/2221]
Tue Dec 31 04:02:52 UTC 2024 I: plasmidomics_0.2.0-10.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: plasmidomics
Binary: plasmidomics
Architecture: all
Version: 0.2.0-10
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Robert Winkler <robert.winkler@bioprocess.org>, Andreas Tille <tille@debian.org>
Homepage: https://www.ira.cinvestav.mx/Investigaci%C3%B3n/Biotecnolog%C3%ADayBioqu%C3%ADmica/ProfesoresInvestigadores/DrRobertWinkler/Software/PlasmidDrawingProgramPlasmidomics02/tabid/778/language/en-US/Default.aspx
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/plasmidomics
Vcs-Git: https://salsa.debian.org/med-team/plasmidomics.git
Build-Depends: debhelper-compat (= 13), dh-python, python3
Package-List:
plasmidomics deb science optional arch=all
Checksums-Sha1:
64ed4b32d50bad2b3b82f4fb5731fa6cf679f8b6 14849 plasmidomics_0.2.0.orig.tar.gz
622e14e9eae4336d3d9501eea33512eb8bb0a59c 3908 plasmidomics_0.2.0-10.debian.tar.xz
Checksums-Sha256:
4d3498b84aa340b7585e3125ae1569fd00227db8b5c9ef2d12b51768e5596bc9 14849 plasmidomics_0.2.0.orig.tar.gz
0277076eb882aaef9ae26ac19a8bb4d8283d21f135fef84f026b609789bdabfe 3908 plasmidomics_0.2.0-10.debian.tar.xz
Files:
622fe91d80c3e3068a9be02d10eef15a 14849 plasmidomics_0.2.0.orig.tar.gz
a9947a90d142226a11aadd28ba56f692 3908 plasmidomics_0.2.0-10.debian.tar.xz
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Tue Dec 31 04:02:52 UTC 2024 I: Checking whether the package is not for us
Tue Dec 31 04:02:52 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net.
Tue Dec 31 04:02:52 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net.
Tue Dec 31 04:04:08 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Dec 30 16:02:53 -12 2024
I: pbuilder-time-stamp: 1735617773
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [plasmidomics_0.2.0-10.dsc]
I: copying [./plasmidomics_0.2.0.orig.tar.gz]
I: copying [./plasmidomics_0.2.0-10.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./plasmidomics_0.2.0-10.dsc: unsupported subcommand
dpkg-source: info: extracting plasmidomics in plasmidomics-0.2.0
dpkg-source: info: unpacking plasmidomics_0.2.0.orig.tar.gz
dpkg-source: info: unpacking plasmidomics_0.2.0-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/21830/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='7f8b8a766e5c447e9d362438c463d221'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='21830'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DY4ie9xG/pbuilderrc_BCki --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DY4ie9xG/b1 --logfile b1/build.log plasmidomics_0.2.0-10.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/21830/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19844 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 65 newly installed, 0 to remove and 0 not upgraded.
Need to get 29.1 MB of archives. After unpacking 112 MB will be used.
Writing extended state information...
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Get: 24 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 25 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
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Get: 31 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-13 [95.9 kB]
Get: 32 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 33 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 34 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB]
Get: 35 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB]
Get: 36 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 37 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 38 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-3 [723 kB]
Get: 39 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.23 [90.6 kB]
Get: 40 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB]
Get: 41 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 42 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 43 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 44 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 45 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 46 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 47 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 48 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB]
Get: 49 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 50 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-3 [1631 kB]
Get: 51 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 52 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 53 http://deb.debian.org/debian unstable/main i386 debhelper all 13.23 [919 kB]
Get: 54 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 55 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 56 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 57 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 58 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 59 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 60 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 61 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 62 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 63 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 64 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.6.0-1 [720 kB]
Get: 65 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20241217 [113 kB]
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Current default time zone: 'Etc/UTC'
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I: Building the package
I: Running cd /build/reproducible-path/plasmidomics-0.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plasmidomics_0.2.0-10_source.changes
dpkg-buildpackage: info: source package plasmidomics
dpkg-buildpackage: info: source version 0.2.0-10
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --with python3
dh_clean
debian/rules binary
dh binary --with python3
dh_update_autotools_config
dh_autoreconf
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/plasmidomics/
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/plasmidomics-0.2.0'
dh_install
mkdir -p debian/plasmidomics/usr/share/plasmidomics
cp -a plasmid debian/plasmidomics/usr/share/plasmidomics/plasmid.py
make[1]: Leaving directory '/build/reproducible-path/plasmidomics-0.2.0'
dh_installdocs
dh_installchangelogs
dh_installman
dh_python3
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'plasmidomics' in '../plasmidomics_0.2.0-10_all.deb'.
dpkg-genbuildinfo --build=binary -O../plasmidomics_0.2.0-10_i386.buildinfo
dpkg-genchanges --build=binary -O../plasmidomics_0.2.0-10_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/21830 and its subdirectories
I: Current time: Mon Dec 30 16:04:07 -12 2024
I: pbuilder-time-stamp: 1735617847
Tue Dec 31 04:04:10 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net.
Tue Dec 31 04:04:10 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net.
Tue Dec 31 04:06:26 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net.
Tue Dec 31 04:06:27 UTC 2024 I: plasmidomics_0.2.0-10_i386.changes:
Format: 1.8
Date: Tue, 12 Oct 2021 10:58:37 +0200
Source: plasmidomics
Binary: plasmidomics
Architecture: all
Version: 0.2.0-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
plasmidomics - draw plasmids and vector maps with PostScript graphics export
Changes:
plasmidomics (0.2.0-10) unstable; urgency=medium
.
* Use fake watch file
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
Checksums-Sha1:
3ba9b7e0be245847992819a40acb23416981f5d9 6848 plasmidomics_0.2.0-10_all.deb
194a39e395bc4d72c3fa02f9bbeac0538d54de64 5811 plasmidomics_0.2.0-10_i386.buildinfo
Checksums-Sha256:
6c5be955be30d87f3e53f4563aa56f3cd062009366280be4331106cd483d3467 6848 plasmidomics_0.2.0-10_all.deb
9c41e910ba02858a3ddfcd3f77d9e0cd9dc2eaecd14ccb3626689647a1b62372 5811 plasmidomics_0.2.0-10_i386.buildinfo
Files:
da52d123d1f9b66f7d221463d533e4c7 6848 science optional plasmidomics_0.2.0-10_all.deb
1fddcad29d98c47f1bd0297ae79a78ea 5811 science optional plasmidomics_0.2.0-10_i386.buildinfo
Tue Dec 31 04:06:28 UTC 2024 I: diffoscope 284 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_3-49944.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DY4ie9xG/plasmidomics_0.2.0-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DY4ie9xG/plasmidomics_0.2.0-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DY4ie9xG/plasmidomics_0.2.0-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DY4ie9xG/b1/plasmidomics_0.2.0-10_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.DY4ie9xG/b2/plasmidomics_0.2.0-10_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.327s)
0.327s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.012s)
0.012s 12 calls diffoscope.comparators.binary.FilesystemFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 631ms
CPU time consumed: 627ms
Tue Dec 31 04:20:43 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists.
Tue Dec 31 04:20:43 UTC 2024 I: plasmidomics from unstable built successfully and reproducibly on i386.
Tue Dec 31 04:20:45 UTC 2024 I: Submitting .buildinfo files to external archives:
Tue Dec 31 04:20:45 UTC 2024 I: Submitting 8.0K b1/plasmidomics_0.2.0-10_i386.buildinfo.asc
Tue Dec 31 04:20:52 UTC 2024 I: Submitting 8.0K b2/plasmidomics_0.2.0-10_i386.buildinfo.asc
Tue Dec 31 04:21:03 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Tue Dec 31 04:21:03 UTC 2024 I: Done submitting .buildinfo files.
Tue Dec 31 04:21:03 UTC 2024 I: Removing signed plasmidomics_0.2.0-10_i386.buildinfo.asc files:
removed './b1/plasmidomics_0.2.0-10_i386.buildinfo.asc'
removed './b2/plasmidomics_0.2.0-10_i386.buildinfo.asc'