Fri Mar 21 21:55:32 UTC 2025 I: starting to build python-emmet-core/unstable/i386 on jenkins on '2025-03-21 21:55' Fri Mar 21 21:55:32 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/61134/console.log Fri Mar 21 21:55:32 UTC 2025 I: Downloading source for unstable/python-emmet-core=0.84.2-2 --2025-03-21 21:55:32-- http://deb.debian.org/debian/pool/main/p/python-emmet-core/python-emmet-core_0.84.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2595 (2.5K) [text/prs.lines.tag] Saving to: ‘python-emmet-core_0.84.2-2.dsc’ 0K .. 100% 371M=0s 2025-03-21 21:55:32 (371 MB/s) - ‘python-emmet-core_0.84.2-2.dsc’ saved [2595/2595] Fri Mar 21 21:55:32 UTC 2025 I: python-emmet-core_0.84.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-emmet-core Binary: python3-emmet-core Architecture: all Version: 0.84.2-2 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://github.com/materialsproject/emmet Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/debichem-team/python-emmet-core Vcs-Git: https://salsa.debian.org/debichem-team/python-emmet-core.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-bson, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm, python3-all, python3-custodian, python3-pymatgen (>= 2023.10.11~), python3-openmm, python3-mdanalysis (>= 2.7.0~), python3-monty (>= 2024.2.2~), python3-pydantic (>= 2.0~), python3-pydantic-settings (>= 2.0~), python3-pybtex (>= 0.24~), python3-typing-extensions (>= 3.7~), python3-spglib (>= 2.0.1~), python3-numpy, python3-pytest , python3-bson , python3-openbabel Package-List: python3-emmet-core deb python optional arch=all Checksums-Sha1: b2c76701f333d7dc6155c1032c82c562917f23f1 204016 python-emmet-core_0.84.2.orig.tar.gz 43f66e9448e89143d5d3881a3c9c59702936298a 47145204 python-emmet-core_0.84.2-2.debian.tar.xz Checksums-Sha256: cc71e85492449d3245b7a26ba826379b1d8e0de6ee5200c6a6ea7d4f3486ac12 204016 python-emmet-core_0.84.2.orig.tar.gz 1ad1453f31141a588d3de7e5cf92a1240a819a684451f427f2726e6a17cefb58 47145204 python-emmet-core_0.84.2-2.debian.tar.xz Files: 8f6e7a53c82f1562e0d8bad4972a6d12 204016 python-emmet-core_0.84.2.orig.tar.gz 096bd39e6891187577f543cb6adbb605 47145204 python-emmet-core_0.84.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmezBuEACgkQVz7x5L1a AfpXvg/9EXb62OCMUMlBax753fQPWUlsNI+cd9lBMaknYKDaLShCRHgp+Oydcjo7 o7iwTmRabp/mFYdzzxhg6IhHp+yEURqSMtecJ1fS+gCPmnRacILcE0L6zSTc2uRH TsXpldgutacAXTmus8SP9E0XR3Pvl4WjTjJZWQSX9tbXPzFO9nrnRKyKsOd2r2dJ lZFGc3Ecbj9jCjTwpGwfsh9pCMoSWGd5TFROuTHMXdGPWuPnlrNUHej2fimDtzY0 a7eItWlvvA0bzWsur/h1o2NtvYghKoCBl6w7JHYoDwhHD54cx+hj3ekRhkdseF3h M7s3o7RufRUyKFH2fIPJx1KFke45FA1y3MA1NCJW7O6UkpTFsBukGhHWdxxzvuqk voi7HHNHufkhGlwmAtupbM3QUlnvWdbahag5QCz5rxcORdWhYhCBSDqWuuxjiZ5W N/3W7hvEO8OJWjx5d7+fBqR6yBjvtaYUZtKJKNZAcvecEryTiET70ckJZIqk8rgq NB41YqeSyiDKpy0nIOJHrmpeNWzUoM8CDH4PSwUpmNiqGjUzf3tMIDWey6e/WwDR XK90nWj7vdhgpyelu/nNZ1eWzMh7irAnQFJePln/G+vSnXPsktGmWcx7LZhaGHz7 V5XwQZ3LDyw1TjcvGmmOVZ3zeeZaTCcu82f+Pm/TB8vRe1PozkE= =lCNV -----END PGP SIGNATURE----- Fri Mar 21 21:55:32 UTC 2025 I: Checking whether the package is not for us Fri Mar 21 21:55:32 UTC 2025 I: Starting 1st build on remote node ionos6-i386.debian.net. Fri Mar 21 21:55:32 UTC 2025 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Fri Mar 21 21:59:11 UTC 2025 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 23 16:18:38 -12 2026 I: pbuilder-time-stamp: 1777004318 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-emmet-core_0.84.2-2.dsc] I: copying [./python-emmet-core_0.84.2.orig.tar.gz] I: copying [./python-emmet-core_0.84.2-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-emmet-core_0.84.2-2.dsc: unsupported subcommand dpkg-source: info: extracting python-emmet-core in python-emmet-core-0.84.2 dpkg-source: info: unpacking python-emmet-core_0.84.2.orig.tar.gz dpkg-source: info: unpacking python-emmet-core_0.84.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_tests.patch dpkg-source: info: applying test_files_dir.patch dpkg-source: info: applying backup_version.patch dpkg-source: info: applying fix_floating_point_comparison_PR1167.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/110863/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='38cb401d3ba34656bd9c6c64d47df390' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='110863' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TPb90HK9/pbuilderrc_Akg2 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TPb90HK9/b1 --logfile b1/build.log python-emmet-core_0.84.2-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/110863/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm, python3-all, python3-custodian, python3-pymatgen (>= 2023.10.11~), python3-openmm, python3-mdanalysis (>= 2.7.0~), python3-monty (>= 2024.2.2~), python3-pydantic (>= 2.0~), python3-pydantic-settings (>= 2.0~), python3-pybtex (>= 0.24~), python3-typing-extensions (>= 3.7~), python3-spglib (>= 2.0.1~), python3-numpy, python3-pytest, python3-bson, python3-openbabel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19791 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-custodian; however: Package python3-custodian is not installed. pbuilder-satisfydepends-dummy depends on python3-pymatgen (>= 2023.10.11~); however: Package python3-pymatgen is not installed. pbuilder-satisfydepends-dummy depends on python3-openmm; however: Package python3-openmm is not installed. pbuilder-satisfydepends-dummy depends on python3-mdanalysis (>= 2.7.0~); however: Package python3-mdanalysis is not installed. pbuilder-satisfydepends-dummy depends on python3-monty (>= 2024.2.2~); however: Package python3-monty is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic (>= 2.0~); however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic-settings (>= 2.0~); however: Package python3-pydantic-settings is not installed. pbuilder-satisfydepends-dummy depends on python3-pybtex (>= 0.24~); however: Package python3-pybtex is not installed. pbuilder-satisfydepends-dummy depends on python3-typing-extensions (>= 3.7~); however: Package python3-typing-extensions is not installed. pbuilder-satisfydepends-dummy depends on python3-spglib (>= 2.0.1~); however: Package python3-spglib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-bson; however: Package python3-bson is not installed. pbuilder-satisfydepends-dummy depends on python3-openbabel; however: Package python3-openbabel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu76{a} libimagequant0{a} libinchi1.07{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libopenbabel7{a} libopenjp2-7{a} libopenmm-dev{a} libopenmm8.1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsymspg2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-annotated-types{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-bson{a} python3-build{a} python3-cairo{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-citeproc{a} python3-contourpy{a} python3-custodian{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dnspython{a} python3-dotenv{a} python3-duecredit{a} python3-email-validator{a} python3-fasteners{a} python3-fastjsonschema{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-griddataformats{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-kiwisolver{a} python3-latexcodec{a} python3-looseversion{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-mda-xdrlib{a} python3-mdanalysis{a} python3-minimal{a} python3-mmtf{a} python3-monotonic{a} python3-monty{a} python3-more-itertools{a} python3-mpmath{a} python3-mrcfile{a} python3-msgpack{a} python3-nbformat{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-openbabel{a} python3-openmm{a} python3-packaging{a} python3-palettable{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-plotly{a} python3-pluggy{a} python3-psutil{a} python3-pybtex{a} python3-pydantic{a} python3-pydantic-core{a} python3-pydantic-settings{a} python3-pymatgen{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytz{a} python3-referencing{a} python3-reportlab{a} python3-requests{a} python3-rlpycairo{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-sentry-sdk{a} python3-setuptools{a} python3-setuptools-scm{a} python3-six{a} python3-spglib{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-threadpoolctl{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-traitlets{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx ncbi-blast+ psmisc python-biopython-doc python-monty-doc python3-ase python3-bottleneck python3-bs4 python3-bson-ext python3-cryptography python3-cssselect python3-fqdn python3-gdal python3-h2 python3-html5lib python3-httpcore python3-httpx python3-isoduration python3-jinja2 python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-paraview python3-pooch python3-pydot python3-pygments python3-pygraphviz python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-sklearn python3-tables python3-tomli python3-uritemplate python3-vtk9 python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 235 newly installed, 0 to remove and 0 not upgraded. Need to get 187 MB of archives. After unpacking 854 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.2-2 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.7.0-1 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.2-2 [2262 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.2-2 [27.1 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.2-2 [1960 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.2-2 [746 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.2-2 [10.1 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.2-2 [28.1 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 python3-numpy-dev i386 1:2.2.3+ds-5 [146 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-19 [735 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:2.2.3+ds-5 [5060 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-7 [66.0 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-7 [876 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20241223 [164 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.46-3 [337 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.46-3 [117 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 file i386 1:5.46-3 [43.4 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-7 [301 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libtcl8.6 i386 8.6.16+dfsg-1 [1103 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.47-1.1 [289 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libfontenc1 i386 1:1.1.8-1+b2 [23.4 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+24 [217 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 xfonts-utils i386 1:7.7+7 [95.1 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 52 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-2.2 [318 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-2.2 [402 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.12-1 [343 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.12-1 [838 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b4 [28.8 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b4 [55.3 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libxss1 i386 1:1.2.3-1+b3 [17.3 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libtk8.6 i386 8.6.16-1 [834 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-8 [618 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 blt i386 2.5.3+dfsg-8 [5984 B] Get: 66 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-4 [539 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 72 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libicu76 i386 76.1-3 [9893 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.3+b1 [734 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20250308 [115 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 fonts-lyx all 2.4.3-1 [190 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.4-1+b1 [596 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libgpg-error0 i386 1.51-3 [87.3 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libgcrypt20 i386 1.11.0-7 [799 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.84.0-2 [1583 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.2.0-1+b1 [505 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libinchi1.07 i386 1.07.3+dfsg-1 [555 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3.1 [170 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libmaeparser1 i386 1.3.1-1+b2 [99.3 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libopenbabel7 i386 3.1.1+dfsg-11+b3 [3372 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.3-2 [216 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libopenmm8.1 i386 8.1.2+dfsg-11 [1104 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libopenmm-dev i386 8.1.2+dfsg-11 [350 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libpython3.13 i386 3.13.2-2 [2202 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libqhull-r8.0 i386 2020.2-6+b2 [259 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.2-1 [14.6 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libsymspg2 i386 2.6.0-1 [200 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.5.0-0.1 [329 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libxslt1.1 i386 1.1.35-1.2 [243 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libyaml-0-2 i386 0.2.5-2 [55.8 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 pybuild-plugin-pyproject all 6.20250308 [11.7 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 python-matplotlib-data all 3.8.3-7 [2735 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.13.2-2 [1044 B] Get: 130 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 python3-attr all 25.1.0-1 [68.7 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3.13-tk i386 3.13.2-2 [108 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-tk i386 3.13.2-1 [9516 B] Get: 137 http://deb.debian.org/debian unstable/main i386 python3-pil.imagetk i386 11.1.0-5+b1 [81.9 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 python3-pil i386 11.1.0-5+b1 [518 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 python3-cairo i386 1.27.0-2 [117 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 python3-freetype all 2.5.1-1 [89.3 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 142 http://deb.debian.org/debian unstable/main i386 python3-reportlab all 4.3.1-1 [1158 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 python3-biopython i386 1.85+dfsg-2+b1 [1668 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 python3-brotli i386 1.1.0-2+b7 [318 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 python3-bson all 4.10.1-5 [87.1 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 149 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer i386 3.4.1-1+b1 [127 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 python3-lxml i386 5.3.1-1+b1 [1257 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 python3-citeproc all 0.7.0-1 [98.3 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 python3-contourpy i386 1.3.1-1+b1 [223 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 154 http://deb.debian.org/debian unstable/main i386 python3-pytz all 2025.1-3 [150 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 python3-tz all 2025.1-3 [4004 B] Get: 156 http://deb.debian.org/debian unstable/main i386 python3-pandas-lib i386 2.2.3+dfsg-8+b1 [4307 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 python3-pydantic-core i386 2.27.2-1+b2 [1454 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 python3-dnspython all 2.7.0-1 [164 kB] Get: 160 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.10-1 [42.0 kB] Get: 161 http://deb.debian.org/debian unstable/main i386 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 162 http://deb.debian.org/debian unstable/main i386 python3-pydantic i386 2.10.6-1 [346 kB] Get: 163 http://deb.debian.org/debian unstable/main i386 python3-tqdm all 4.67.1-3 [90.3 kB] Get: 164 http://deb.debian.org/debian unstable/main i386 python3-ruamel.yaml.clib i386 0.2.12+ds-1+b1 [137 kB] Get: 165 http://deb.debian.org/debian unstable/main i386 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get: 166 http://deb.debian.org/debian unstable/main i386 python3-monty all 2025.3.3-1 [46.1 kB] Get: 167 http://deb.debian.org/debian unstable/main i386 python3-psutil i386 7.0.0-1 [221 kB] Get: 168 http://deb.debian.org/debian unstable/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 169 http://deb.debian.org/debian unstable/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 170 http://deb.debian.org/debian unstable/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 171 http://deb.debian.org/debian unstable/main i386 python3-fs all 2.4.16-7 [95.2 kB] Get: 172 http://deb.debian.org/debian unstable/main i386 python3-lz4 i386 4.4.0+dfsg-1+b1 [25.5 kB] Get: 173 http://deb.debian.org/debian unstable/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 174 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.15.2-6 [16.4 MB] Get: 175 http://deb.debian.org/debian unstable/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 176 http://deb.debian.org/debian unstable/main i386 python3-sympy all 1.13.3-5 [4148 kB] Get: 177 http://deb.debian.org/debian unstable/main i386 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 178 http://deb.debian.org/debian unstable/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 179 http://deb.debian.org/debian unstable/main i386 python3-fonttools i386 4.55.3-2+b1 [1442 kB] Get: 180 http://deb.debian.org/debian unstable/main i386 python3-kiwisolver i386 1.4.7-3+b1 [69.7 kB] Get: 181 http://deb.debian.org/debian unstable/main i386 python3-matplotlib i386 3.8.3-7+b1 [23.0 MB] Get: 182 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 2.3.0-2 [114 kB] Get: 183 http://deb.debian.org/debian unstable/main i386 python3-sentry-sdk all 2.18.0-1 [236 kB] Get: 184 http://deb.debian.org/debian unstable/main i386 python3-custodian all 2024.10.16-1 [95.9 kB] Get: 185 http://deb.debian.org/debian unstable/main i386 python3-dotenv all 1.0.1-1 [26.6 kB] Get: 186 http://deb.debian.org/debian unstable/main i386 python3-looseversion all 1.3.0-3 [8964 B] Get: 187 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 188 http://deb.debian.org/debian unstable/main i386 python3-duecredit all 0.10.2-2 [70.6 kB] Get: 189 http://deb.debian.org/debian unstable/main i386 python3-monotonic all 1.6-3 [5340 B] Get: 190 http://deb.debian.org/debian unstable/main i386 python3-fasteners all 0.18-2 [14.0 kB] Get: 191 http://deb.debian.org/debian unstable/main i386 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Get: 192 http://deb.debian.org/debian unstable/main i386 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 193 http://deb.debian.org/debian unstable/main i386 python3-mrcfile all 1.5.4-2 [118 kB] Get: 194 http://deb.debian.org/debian unstable/main i386 python3-griddataformats all 1.0.2-2 [2048 kB] Get: 195 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 196 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 197 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 198 http://deb.debian.org/debian unstable/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 199 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 200 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 201 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 202 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 203 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 204 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 205 http://deb.debian.org/debian unstable/main i386 python3-joblib all 1.4.2-3 [216 kB] Get: 206 http://deb.debian.org/debian unstable/main i386 python3-rpds-py i386 0.21.0-2+b1 [275 kB] Get: 207 http://deb.debian.org/debian unstable/main i386 python3-referencing all 0.35.1-2 [23.5 kB] Get: 208 http://deb.debian.org/debian unstable/main i386 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 209 http://deb.debian.org/debian unstable/main i386 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 210 http://deb.debian.org/debian unstable/main i386 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 211 http://deb.debian.org/debian unstable/main i386 python3-jupyter-core all 5.7.2-5 [35.3 kB] Get: 212 http://deb.debian.org/debian unstable/main i386 python3-latexcodec all 3.0.0-1 [17.5 kB] Get: 213 http://deb.debian.org/debian unstable/main i386 python3-mda-xdrlib all 0.2.0-3 [11.6 kB] Get: 214 http://deb.debian.org/debian unstable/main i386 python3-msgpack i386 1.0.3-3+b4 [86.1 kB] Get: 215 http://deb.debian.org/debian unstable/main i386 python3-mmtf all 1.1.3-1 [17.0 kB] Get: 216 http://deb.debian.org/debian unstable/main i386 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 217 http://deb.debian.org/debian unstable/main i386 python3-mdanalysis i386 2.8.0-4+b1 [4154 kB] Get: 218 http://deb.debian.org/debian unstable/main i386 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 219 http://deb.debian.org/debian unstable/main i386 python3-networkx all 3.2.1-5 [13.0 MB] Get: 220 http://deb.debian.org/debian unstable/main i386 python3-openbabel i386 3.1.1+dfsg-11+b3 [575 kB] Get: 221 http://deb.debian.org/debian unstable/main i386 python3-openmm i386 8.1.2+dfsg-11 [6547 kB] Get: 222 http://deb.debian.org/debian unstable/main i386 python3-palettable all 3.3.3-1 [69.7 kB] Get: 223 http://deb.debian.org/debian unstable/main i386 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 224 http://deb.debian.org/debian unstable/main i386 python3-plotly all 5.20.0+dfsg-1 [2726 kB] Get: 225 http://deb.debian.org/debian unstable/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 226 http://deb.debian.org/debian unstable/main i386 python3-six all 1.17.0-1 [16.5 kB] Get: 227 http://deb.debian.org/debian unstable/main i386 python3-yaml i386 6.0.2-1+b2 [135 kB] Get: 228 http://deb.debian.org/debian unstable/main i386 python3-pybtex all 0.24.0-4 [74.6 kB] Get: 229 http://deb.debian.org/debian unstable/main i386 python3-pydantic-settings all 2.8.1-1 [44.9 kB] Get: 230 http://deb.debian.org/debian unstable/main i386 python3-spglib i386 2.6.0-1 [54.2 kB] Get: 231 http://deb.debian.org/debian unstable/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 232 http://deb.debian.org/debian unstable/main i386 python3-uncertainties all 3.2.2-1 [54.7 kB] Get: 233 http://deb.debian.org/debian unstable/main i386 python3-pymatgen i386 2025.2.18+dfsg1-4 [2596 kB] Get: 234 http://deb.debian.org/debian unstable/main i386 python3-pytest all 8.3.5-1 [250 kB] Get: 235 http://deb.debian.org/debian unstable/main i386 python3-setuptools-scm all 8.2.0-1 [41.0 kB] Fetched 187 MB in 2s (81.6 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19791 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.13-minimal:i386. Preparing to unpack .../libpython3.13-minimal_3.13.2-2_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-2) ... Selecting previously unselected package libexpat1:i386. 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_i386.deb ... Unpacking python3.13 (3.13.2-2) ... Selecting previously unselected package libpython3-stdlib:i386. 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Setting up libwebpmux3:i386 (1.5.0-0.1) ... Setting up libinchi1.07 (1.07.3+dfsg-1) ... Setting up libopenmm8.1 (8.1.2+dfsg-11) ... Setting up readline-common (8.2-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-4) ... Setting up fontconfig-config (2.15.0-2.2) ... 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Setting up libpython3-stdlib:i386 (3.13.2-2) ... Setting up libpython3.13:i386 (3.13.2-2) ... Setting up libxft2:i386 (2.3.6-1+b4) ... Setting up python3.13 (3.13.2-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:i386 (8.6.16-1) ... Setting up python3 (3.13.2-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-wheel (0.45.1-1) ... Setting up libcairo2:i386 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.2-2) ... Setting up python3-annotated-types (0.7.0-1) ... Setting up python3-mda-xdrlib (0.2.0-3) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-psutil (7.0.0-1) ... Setting up python3-monotonic (1.6-3) ... Setting up python3-fs (2.4.16-7) ... Setting up python3-six (1.17.0-1) ... Setting up python3-bson (4.10.1-5) ... 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Setting up python3-openmm (8.1.2+dfsg-11) ... /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:426: SyntaxWarning: invalid escape sequence '\S' r"(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:444: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:446: SyntaxWarning: invalid escape sequence '\s' "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:448: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:450: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words Setting up python3-looseversion (1.3.0-3) ... Setting up python3-lxml:i386 (5.3.1-1+b1) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-1+b1) ... Setting up python3-email-validator (2.2.0-1) ... Setting up python3-msgpack (1.0.3-3+b4) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.2-1) ... Setting up python3-spglib (2.6.0-1) ... Setting up python3-jupyter-core (5.7.2-5) ... Setting up python3-uncertainties (3.2.2-1) ... Setting up python3-mrcfile (1.5.4-2) ... Setting up python3-dotenv (1.0.1-1) ... Setting up dh-python (6.20250308) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.1.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-scipy (1.15.2-6) ... Setting up python3-pydantic-core (2.27.2-1+b2) ... Setting up python3-cairo (1.27.0-2) ... 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Setting up python3-duecredit (0.10.2-2) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-setuptools-scm (8.2.0-1) ... Setting up python3-palettable (3.3.3-1) ... Setting up python3-pybtex (0.24.0-4) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-plotly (5.20.0+dfsg-1) ... Setting up python3-fonttools (4.55.3-2+b1) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-7+b1) ... Setting up python3-pymatgen (2025.2.18+dfsg1-4) ... Setting up python3-custodian (2024.10.16-1) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-2+b1) ... Setting up python3-mdanalysis (2.8.0-4+b1) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-emmet-core-0.84.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-emmet-core_0.84.2-2_source.changes dpkg-buildpackage: info: source package python-emmet-core dpkg-buildpackage: info: source version 0.84.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from python-emmet-core-0.84.2/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core * Building wheel... WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3/dist-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running bdist_wheel running build running build_py creating build/lib/emmet/core copying emmet/core/oxidation_states.py -> build/lib/emmet/core copying emmet/core/provenance.py -> build/lib/emmet/core copying emmet/core/bonds.py -> build/lib/emmet/core copying emmet/core/similarity.py -> build/lib/emmet/core copying emmet/core/math.py -> build/lib/emmet/core copying emmet/core/robocrys.py -> build/lib/emmet/core copying emmet/core/elasticity.py -> build/lib/emmet/core copying emmet/core/defect.py -> build/lib/emmet/core copying emmet/core/summary.py -> build/lib/emmet/core copying emmet/core/structure_group.py -> build/lib/emmet/core copying emmet/core/symmetry.py -> build/lib/emmet/core copying emmet/core/surface_properties.py -> build/lib/emmet/core copying emmet/core/utils.py -> build/lib/emmet/core copying emmet/core/_general_store.py -> build/lib/emmet/core copying emmet/core/_user_settings.py -> build/lib/emmet/core copying emmet/core/thermo.py -> build/lib/emmet/core copying emmet/core/eos.py -> build/lib/emmet/core copying emmet/core/structure.py -> build/lib/emmet/core copying emmet/core/task.py -> build/lib/emmet/core copying emmet/core/molecules_jcesr.py -> build/lib/emmet/core copying emmet/core/mpid.py -> build/lib/emmet/core copying emmet/core/chemenv.py -> build/lib/emmet/core copying emmet/core/base.py -> build/lib/emmet/core copying emmet/core/corrected_entries.py -> build/lib/emmet/core copying emmet/core/qc_tasks.py -> build/lib/emmet/core copying emmet/core/stubs.py -> build/lib/emmet/core copying emmet/core/elasticity_legacy.py -> build/lib/emmet/core copying emmet/core/formula_autocomplete.py -> build/lib/emmet/core copying emmet/core/tasks.py -> build/lib/emmet/core copying emmet/core/optimade.py -> build/lib/emmet/core copying emmet/core/polar.py -> build/lib/emmet/core copying emmet/core/absorption.py -> build/lib/emmet/core copying emmet/core/find_structure.py -> build/lib/emmet/core copying emmet/core/dois.py -> build/lib/emmet/core copying emmet/core/_messages.py -> build/lib/emmet/core copying emmet/core/material.py -> build/lib/emmet/core copying emmet/core/material_property.py -> build/lib/emmet/core copying emmet/core/spectrum.py -> build/lib/emmet/core copying emmet/core/mpcomplete.py -> build/lib/emmet/core copying emmet/core/charge_density.py -> build/lib/emmet/core copying emmet/core/phonon.py -> build/lib/emmet/core copying emmet/core/substrates.py -> build/lib/emmet/core copying emmet/core/__init__.py -> build/lib/emmet/core copying emmet/core/settings.py -> build/lib/emmet/core copying emmet/core/ml.py -> build/lib/emmet/core copying emmet/core/alloys.py -> build/lib/emmet/core copying emmet/core/xrd.py -> build/lib/emmet/core copying emmet/core/grain_boundary.py -> build/lib/emmet/core copying emmet/core/xas.py -> build/lib/emmet/core copying emmet/core/electrode.py -> build/lib/emmet/core copying emmet/core/common.py -> build/lib/emmet/core copying emmet/core/electronic_structure.py -> build/lib/emmet/core copying emmet/core/fermi.py -> build/lib/emmet/core copying emmet/core/magnetism.py -> build/lib/emmet/core creating build/lib/emmet/core/vasp copying emmet/core/vasp/task_valid.py -> build/lib/emmet/core/vasp copying emmet/core/vasp/calculation.py -> build/lib/emmet/core/vasp copying emmet/core/vasp/material.py -> build/lib/emmet/core/vasp copying emmet/core/vasp/validation.py -> build/lib/emmet/core/vasp copying emmet/core/vasp/__init__.py -> build/lib/emmet/core/vasp creating build/lib/emmet/core/molecules copying emmet/core/molecules/bonds.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/summary.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/molecule_property.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/atomic.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/orbitals.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/thermo.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/metal_binding.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/redox.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/__init__.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/vibration.py -> build/lib/emmet/core/molecules creating build/lib/emmet/core/synthesis copying emmet/core/synthesis/core.py -> build/lib/emmet/core/synthesis copying emmet/core/synthesis/materials.py -> build/lib/emmet/core/synthesis copying emmet/core/synthesis/__init__.py -> build/lib/emmet/core/synthesis copying emmet/core/synthesis/operations.py -> build/lib/emmet/core/synthesis copying emmet/core/synthesis/reaction.py -> build/lib/emmet/core/synthesis creating build/lib/emmet/core/mobility copying emmet/core/mobility/migrationgraph.py -> build/lib/emmet/core/mobility creating build/lib/emmet/core/feff copying emmet/core/feff/task.py -> build/lib/emmet/core/feff copying emmet/core/feff/__init__.py -> build/lib/emmet/core/feff creating build/lib/emmet/core/qchem copying emmet/core/qchem/task.py -> build/lib/emmet/core/qchem copying emmet/core/qchem/calculation.py -> build/lib/emmet/core/qchem copying emmet/core/qchem/molecule.py -> build/lib/emmet/core/qchem copying emmet/core/qchem/__init__.py -> build/lib/emmet/core/qchem creating build/lib/emmet/core/openmm copying emmet/core/openmm/tasks.py -> build/lib/emmet/core/openmm copying emmet/core/openmm/__init__.py -> build/lib/emmet/core/openmm copying emmet/core/openmm/calculations.py -> build/lib/emmet/core/openmm creating build/lib/emmet/core/openff copying emmet/core/openff/solvation.py -> build/lib/emmet/core/openff copying emmet/core/openff/tasks.py -> build/lib/emmet/core/openff copying emmet/core/openff/benchmarking.py -> build/lib/emmet/core/openff copying emmet/core/openff/__init__.py -> build/lib/emmet/core/openff creating build/lib/emmet/core/vasp/calc_types copying emmet/core/vasp/calc_types/enums.py -> build/lib/emmet/core/vasp/calc_types copying emmet/core/vasp/calc_types/utils.py -> build/lib/emmet/core/vasp/calc_types copying emmet/core/vasp/calc_types/__init__.py -> build/lib/emmet/core/vasp/calc_types creating build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/em_utils.py -> build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/enums.py -> build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/utils.py -> build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/calc_types.py -> build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/__init__.py -> build/lib/emmet/core/qchem/calc_types running egg_info writing emmet_core.egg-info/PKG-INFO writing dependency_links to emmet_core.egg-info/dependency_links.txt writing requirements to emmet_core.egg-info/requires.txt writing top-level names to emmet_core.egg-info/top_level.txt reading manifest file 'emmet_core.egg-info/SOURCES.txt' writing manifest file 'emmet_core.egg-info/SOURCES.txt' copying emmet/core/vasp/calc_types/calc_types.yaml -> build/lib/emmet/core/vasp/calc_types copying emmet/core/qchem/calc_types/calc_types.yaml -> build/lib/emmet/core/qchem/calc_types installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/emmet creating build/bdist.linux-i686/wheel/emmet/core creating build/bdist.linux-i686/wheel/emmet/core/vasp creating build/bdist.linux-i686/wheel/emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/enums.py -> build/bdist.linux-i686/wheel/./emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/utils.py -> build/bdist.linux-i686/wheel/./emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/calc_types.yaml -> build/bdist.linux-i686/wheel/./emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/task_valid.py -> build/bdist.linux-i686/wheel/./emmet/core/vasp copying build/lib/emmet/core/vasp/calculation.py -> build/bdist.linux-i686/wheel/./emmet/core/vasp copying build/lib/emmet/core/vasp/material.py -> build/bdist.linux-i686/wheel/./emmet/core/vasp copying build/lib/emmet/core/vasp/validation.py -> build/bdist.linux-i686/wheel/./emmet/core/vasp copying build/lib/emmet/core/vasp/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/vasp copying build/lib/emmet/core/oxidation_states.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/provenance.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/bonds.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/similarity.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/math.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/robocrys.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/elasticity.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/defect.py -> build/bdist.linux-i686/wheel/./emmet/core creating build/bdist.linux-i686/wheel/emmet/core/molecules copying build/lib/emmet/core/molecules/bonds.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/summary.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/molecule_property.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/atomic.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/orbitals.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/thermo.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/metal_binding.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/redox.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/molecules/vibration.py -> build/bdist.linux-i686/wheel/./emmet/core/molecules copying build/lib/emmet/core/summary.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/structure_group.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/symmetry.py -> build/bdist.linux-i686/wheel/./emmet/core creating build/bdist.linux-i686/wheel/emmet/core/synthesis copying build/lib/emmet/core/synthesis/core.py -> build/bdist.linux-i686/wheel/./emmet/core/synthesis copying build/lib/emmet/core/synthesis/materials.py -> build/bdist.linux-i686/wheel/./emmet/core/synthesis copying build/lib/emmet/core/synthesis/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/synthesis copying build/lib/emmet/core/synthesis/operations.py -> build/bdist.linux-i686/wheel/./emmet/core/synthesis copying build/lib/emmet/core/synthesis/reaction.py -> build/bdist.linux-i686/wheel/./emmet/core/synthesis copying build/lib/emmet/core/surface_properties.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/utils.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/_general_store.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/_user_settings.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/thermo.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/eos.py -> build/bdist.linux-i686/wheel/./emmet/core creating build/bdist.linux-i686/wheel/emmet/core/mobility copying build/lib/emmet/core/mobility/migrationgraph.py -> build/bdist.linux-i686/wheel/./emmet/core/mobility copying build/lib/emmet/core/structure.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/task.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/molecules_jcesr.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/mpid.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/chemenv.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/base.py -> build/bdist.linux-i686/wheel/./emmet/core creating build/bdist.linux-i686/wheel/emmet/core/feff copying build/lib/emmet/core/feff/task.py -> build/bdist.linux-i686/wheel/./emmet/core/feff copying build/lib/emmet/core/feff/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/feff copying build/lib/emmet/core/corrected_entries.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/qc_tasks.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/stubs.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/elasticity_legacy.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/formula_autocomplete.py -> build/bdist.linux-i686/wheel/./emmet/core creating build/bdist.linux-i686/wheel/emmet/core/qchem creating build/bdist.linux-i686/wheel/emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/em_utils.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/enums.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/utils.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/calc_types.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/calc_types.yaml -> build/bdist.linux-i686/wheel/./emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/task.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem copying build/lib/emmet/core/qchem/calculation.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem copying build/lib/emmet/core/qchem/molecule.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem copying build/lib/emmet/core/qchem/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/qchem copying build/lib/emmet/core/tasks.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/optimade.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/polar.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/absorption.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/find_structure.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/dois.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/_messages.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/material.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/material_property.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/spectrum.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/mpcomplete.py -> build/bdist.linux-i686/wheel/./emmet/core creating build/bdist.linux-i686/wheel/emmet/core/openmm copying build/lib/emmet/core/openmm/tasks.py -> build/bdist.linux-i686/wheel/./emmet/core/openmm copying build/lib/emmet/core/openmm/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/openmm copying build/lib/emmet/core/openmm/calculations.py -> build/bdist.linux-i686/wheel/./emmet/core/openmm copying build/lib/emmet/core/charge_density.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/phonon.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/substrates.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/settings.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/ml.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/alloys.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/xrd.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/grain_boundary.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/xas.py -> build/bdist.linux-i686/wheel/./emmet/core creating build/bdist.linux-i686/wheel/emmet/core/openff copying build/lib/emmet/core/openff/solvation.py -> build/bdist.linux-i686/wheel/./emmet/core/openff copying build/lib/emmet/core/openff/tasks.py -> build/bdist.linux-i686/wheel/./emmet/core/openff copying build/lib/emmet/core/openff/benchmarking.py -> build/bdist.linux-i686/wheel/./emmet/core/openff copying build/lib/emmet/core/openff/__init__.py -> build/bdist.linux-i686/wheel/./emmet/core/openff copying build/lib/emmet/core/electrode.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/common.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/electronic_structure.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/fermi.py -> build/bdist.linux-i686/wheel/./emmet/core copying build/lib/emmet/core/magnetism.py -> build/bdist.linux-i686/wheel/./emmet/core running install_egg_info Copying emmet_core.egg-info to build/bdist.linux-i686/wheel/./emmet_core-0.84.2.egg-info running install_scripts creating build/bdist.linux-i686/wheel/emmet_core-0.84.2.dist-info/WHEEL creating '/build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/.tmp-8bewnyaw/emmet_core-0.84.2-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'emmet/core/__init__.py' adding 'emmet/core/_general_store.py' adding 'emmet/core/_messages.py' adding 'emmet/core/_user_settings.py' adding 'emmet/core/absorption.py' adding 'emmet/core/alloys.py' adding 'emmet/core/base.py' adding 'emmet/core/bonds.py' adding 'emmet/core/charge_density.py' adding 'emmet/core/chemenv.py' adding 'emmet/core/common.py' adding 'emmet/core/corrected_entries.py' adding 'emmet/core/defect.py' adding 'emmet/core/dois.py' adding 'emmet/core/elasticity.py' adding 'emmet/core/elasticity_legacy.py' adding 'emmet/core/electrode.py' adding 'emmet/core/electronic_structure.py' adding 'emmet/core/eos.py' adding 'emmet/core/fermi.py' adding 'emmet/core/find_structure.py' adding 'emmet/core/formula_autocomplete.py' adding 'emmet/core/grain_boundary.py' adding 'emmet/core/magnetism.py' adding 'emmet/core/material.py' adding 'emmet/core/material_property.py' adding 'emmet/core/math.py' adding 'emmet/core/ml.py' adding 'emmet/core/molecules_jcesr.py' adding 'emmet/core/mpcomplete.py' adding 'emmet/core/mpid.py' adding 'emmet/core/optimade.py' adding 'emmet/core/oxidation_states.py' adding 'emmet/core/phonon.py' adding 'emmet/core/polar.py' adding 'emmet/core/provenance.py' adding 'emmet/core/qc_tasks.py' adding 'emmet/core/robocrys.py' adding 'emmet/core/settings.py' adding 'emmet/core/similarity.py' adding 'emmet/core/spectrum.py' adding 'emmet/core/structure.py' adding 'emmet/core/structure_group.py' adding 'emmet/core/stubs.py' adding 'emmet/core/substrates.py' adding 'emmet/core/summary.py' adding 'emmet/core/surface_properties.py' adding 'emmet/core/symmetry.py' adding 'emmet/core/task.py' adding 'emmet/core/tasks.py' adding 'emmet/core/thermo.py' adding 'emmet/core/utils.py' adding 'emmet/core/xas.py' adding 'emmet/core/xrd.py' adding 'emmet/core/feff/__init__.py' adding 'emmet/core/feff/task.py' adding 'emmet/core/mobility/migrationgraph.py' adding 'emmet/core/molecules/__init__.py' adding 'emmet/core/molecules/atomic.py' adding 'emmet/core/molecules/bonds.py' adding 'emmet/core/molecules/metal_binding.py' adding 'emmet/core/molecules/molecule_property.py' adding 'emmet/core/molecules/orbitals.py' adding 'emmet/core/molecules/redox.py' adding 'emmet/core/molecules/summary.py' adding 'emmet/core/molecules/thermo.py' adding 'emmet/core/molecules/vibration.py' adding 'emmet/core/openff/__init__.py' adding 'emmet/core/openff/benchmarking.py' adding 'emmet/core/openff/solvation.py' adding 'emmet/core/openff/tasks.py' adding 'emmet/core/openmm/__init__.py' adding 'emmet/core/openmm/calculations.py' adding 'emmet/core/openmm/tasks.py' adding 'emmet/core/qchem/__init__.py' adding 'emmet/core/qchem/calculation.py' adding 'emmet/core/qchem/molecule.py' adding 'emmet/core/qchem/task.py' adding 'emmet/core/qchem/calc_types/__init__.py' adding 'emmet/core/qchem/calc_types/calc_types.py' adding 'emmet/core/qchem/calc_types/calc_types.yaml' adding 'emmet/core/qchem/calc_types/em_utils.py' adding 'emmet/core/qchem/calc_types/enums.py' adding 'emmet/core/qchem/calc_types/utils.py' adding 'emmet/core/synthesis/__init__.py' adding 'emmet/core/synthesis/core.py' adding 'emmet/core/synthesis/materials.py' adding 'emmet/core/synthesis/operations.py' adding 'emmet/core/synthesis/reaction.py' adding 'emmet/core/vasp/__init__.py' adding 'emmet/core/vasp/calculation.py' adding 'emmet/core/vasp/material.py' adding 'emmet/core/vasp/task_valid.py' adding 'emmet/core/vasp/validation.py' adding 'emmet/core/vasp/calc_types/__init__.py' adding 'emmet/core/vasp/calc_types/calc_types.yaml' adding 'emmet/core/vasp/calc_types/enums.py' adding 'emmet/core/vasp/calc_types/utils.py' adding 'emmet_core-0.84.2.dist-info/METADATA' adding 'emmet_core-0.84.2.dist-info/WHEEL' adding 'emmet_core-0.84.2.dist-info/top_level.txt' adding 'emmet_core-0.84.2.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built emmet_core-0.84.2-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-emmet-core-0.84.2' set -e; \ for py in 3.13; do \ SKIP_TESTS=""; \ list_initialised=0; \ for t in test_from_url test_seriallization test_task_doc; do \ if [ ${list_initialised} = 0 ]; then \ SKIP_TESTS=$t; \ list_initialised=1; \ else \ SKIP_TESTS="${SKIP_TESTS} or $t"; \ fi; \ done; \ if [ "x${SKIP_TESTS}" != "x" ]; then \ SKIP_TESTS="not ( ${SKIP_TESTS} )"; \ fi; \ echo "skipping tests: ${SKIP_TESTS}"; \ pybuilddir=`pybuild --pyver $py --print build_dir | awk '{print $3}'`; \ testdir=/build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python$py; \ mkdir $testdir; cp -a tests $testdir; \ (cd $testdir; \ PMG_TEST_FILES_DIR=/build/reproducible-path/python-emmet-core-0.84.2/debian/test_files PYTHONPATH=$pybuilddir \ python$py -m pytest -v -k "${SKIP_TESTS}" $testdir); \ done skipping tests: not ( test_from_url or test_seriallization or test_task_doc ) ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-emmet-core-0.84.2 plugins: typeguard-4.4.2 collecting ... collected 195 items / 9 deselected / 4 skipped / 186 selected tests/molecules/test_atomic.py::test_partial_charges PASSED [ 0%] tests/molecules/test_atomic.py::test_partial_spins PASSED [ 1%] tests/molecules/test_bonds.py::test_bonding PASSED [ 1%] tests/molecules/test_metal_binding.py::test_metal_binding PASSED [ 2%] 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[ 54%] tests/test_settings.py::test_default_config_path PASSED [ 54%] tests/test_settings.py::test_allow_extra_fields PASSED [ 55%] tests/test_structure_group.py::test_StructureGroupDoc_from_grouped_entries PASSED [ 55%] tests/test_structure_group.py::test_StructureGroupDoc_from_ungrouped_entries SKIPPED [ 56%] tests/test_structure_group.py::test_lexi_id PASSED [ 56%] tests/test_structure_metadata.py::test_symmetry PASSED [ 57%] tests/test_structure_metadata.py::test_structure_metadata PASSED [ 58%] tests/test_structure_metadata.py::test_structure_metadata_fewer_fields PASSED [ 58%] tests/test_structure_metadata.py::test_composition PASSED [ 59%] tests/test_structure_metadata.py::test_schema PASSED [ 59%] tests/test_task.py::test_analysis_summary[SiOptimizeDouble] PASSED [ 60%] tests/test_task.py::test_analysis_summary[SiStatic] PASSED [ 60%] tests/test_task.py::test_analysis_summary[SiNonSCFUniform] PASSED [ 61%] tests/test_task.py::test_input_summary[SiOptimizeDouble] PASSED [ 61%] 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tests/test_xrd.py::test_from_target[CoKa] PASSED [ 88%] tests/test_xrd.py::test_from_target[CoKa2] PASSED [ 89%] tests/test_xrd.py::test_from_target[CoKa1] PASSED [ 89%] tests/test_xrd.py::test_from_target[CoKb1] PASSED [ 90%] tests/test_xrd.py::test_from_target[AgKa] PASSED [ 90%] tests/test_xrd.py::test_from_target[AgKa2] PASSED [ 91%] tests/test_xrd.py::test_from_target[AgKa1] PASSED [ 91%] tests/test_xrd.py::test_from_target[AgKb1] PASSED [ 92%] tests/test_xrd.py::test_schema PASSED [ 93%] tests/vasp/test_calc_types.py::test_enums PASSED [ 93%] tests/vasp/test_materials.py::test_make_mat PASSED [ 94%] tests/vasp/test_materials.py::test_make_deprecated_mat PASSED [ 94%] tests/vasp/test_materials.py::test_schema PASSED [ 95%] tests/vasp/test_vasp.py::test_task_type PASSED [ 95%] tests/vasp/test_vasp.py::test_run_type PASSED [ 96%] tests/vasp/test_vasp.py::test_validator PASSED [ 96%] tests/vasp/test_vasp.py::test_validator_magmom PASSED [ 97%] tests/vasp/test_vasp.py::test_validator_failed_symmetry PASSED [ 97%] tests/vasp/test_vasp.py::test_computed_entry PASSED [ 98%] tests/vasp/test_vasp.py::test_ldau PASSED [ 98%] tests/vasp/test_vasp.py::test_ldau_validation PASSED [ 99%] tests/vasp/test_vasp.py::test_potcar_stats_check PASSED [100%] =============================== warnings summary =============================== ../cpython3_3.13_emmet-core/build/emmet/core/vasp/calculation.py:304 /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/vasp/calculation.py:304: PydanticDeprecatedSince20: `pydantic.config.Extra` is deprecated, use literal values instead (e.g. `extra='allow'`). Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ class ElectronicStep(BaseModel, extra=Extra.allow): # type: ignore ../cpython3_3.13_emmet-core/build/emmet/core/vasp/calculation.py:328 /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/vasp/calculation.py:328: PydanticDeprecatedSince20: `pydantic.config.Extra` is deprecated, use literal values instead (e.g. `extra='allow'`). Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ class IonicStep(BaseModel, extra=Extra.allow): # type: ignore :488 :488: DeprecationWarning: builtin type SwigPyPacked has no __module__ attribute :488 :488: DeprecationWarning: builtin type SwigPyObject has no __module__ attribute :488 :488: DeprecationWarning: builtin type swigvarlink has no __module__ attribute ../../../../../usr/lib/python3/dist-packages/pybtex/plugin/__init__.py:26 /usr/lib/python3/dist-packages/pybtex/plugin/__init__.py:26: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources .pybuild/test_python3.13/tests/molecules/test_atomic.py::test_partial_charges /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/molecules/test_atomic.py:15: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "liec_tasks.json.gz") as f: .pybuild/test_python3.13/tests/molecules/test_atomic.py: 12 warnings .pybuild/test_python3.13/tests/molecules/test_bonds.py: 6 warnings .pybuild/test_python3.13/tests/molecules/test_metal_binding.py: 1 warning .pybuild/test_python3.13/tests/molecules/test_mol_thermo.py: 4 warnings .pybuild/test_python3.13/tests/molecules/test_orbitals.py: 4 warnings .pybuild/test_python3.13/tests/molecules/test_redox.py: 3 warnings .pybuild/test_python3.13/tests/molecules/test_summary.py: 1 warning .pybuild/test_python3.13/tests/molecules/test_vibration.py: 2 warnings .pybuild/test_python3.13/tests/test_absorption.py: 1 warning .pybuild/test_python3.13/tests/test_chemenv.py: 14 warnings .pybuild/test_python3.13/tests/test_elasticity.py: 1 warning .pybuild/test_python3.13/tests/test_magnetism.py: 10 warnings .pybuild/test_python3.13/tests/test_oxidation_states.py: 14 warnings .pybuild/test_python3.13/tests/test_polar.py: 2 warnings .pybuild/test_python3.13/tests/test_provenance.py: 2 warnings .pybuild/test_python3.13/tests/test_thermo.py: 5 warnings .pybuild/test_python3.13/tests/test_xrd.py: 48 warnings .pybuild/test_python3.13/tests/vasp/test_vasp.py: 12 warnings /usr/lib/python3/dist-packages/pydantic/main.py:214: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). validated_self = self.__pydantic_validator__.validate_python(data, self_instance=self) .pybuild/test_python3.13/tests/molecules/test_bonds.py::test_bonding /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/molecules/test_bonds.py:15: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "liec_tasks.json.gz") as f: .pybuild/test_python3.13/tests/molecules/test_bonds.py::test_bonding /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/utils.py:255: FutureWarning: with_local_env_strategy is deprecated, and will be removed on 2025-03-20 Use from_local_env_strategy in pymatgen.analysis.graphs instead. Deprecated on 2024-03-29. mol_graph = MoleculeGraph.with_local_env_strategy(mol, OpenBabelNN()) .pybuild/test_python3.13/tests/molecules/test_bonds.py::test_bonding /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/molecules/bonds.py:278: FutureWarning: with_empty_graph is deprecated, and will be removed on 2025-03-20 Use from_empty_graph in pymatgen.analysis.graphs instead. Deprecated on 2024-03-29. mg = MoleculeGraph.with_empty_graph(mol) .pybuild/test_python3.13/tests/molecules/test_mol_thermo.py::test_thermo /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/molecules/test_mol_thermo.py:15: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "liec_tasks.json.gz") as f: .pybuild/test_python3.13/tests/molecules/test_vibration.py::test_vibration /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/molecules/test_vibration.py:14: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "liec_tasks.json.gz") as f: .pybuild/test_python3.13/tests/qchem/test_molecules.py::test_schema /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/qchem/test_molecules.py:84: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ MoleculeDoc.schema() .pybuild/test_python3.13/tests/test_calculation.py: 8 warnings .pybuild/test_python3.13/tests/test_task.py: 6 warnings /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1260: UserWarning: No POTCAR file with matching TITEL fields was found in if potcar := self.get_potcars(path): .pybuild/test_python3.13/tests/test_calculation.py: 8 warnings .pybuild/test_python3.13/tests/test_task.py: 6 warnings /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1278: UserWarning: No POTCAR file with matching TITEL fields was found in potcar = self.get_potcars(path) .pybuild/test_python3.13/tests/test_elasticity.py: 84834 warnings /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:287: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return sum(np.transpose(self, ind) for ind in perms) / len(perms) .pybuild/test_python3.13/tests/test_elasticity.py: 226232 warnings .pybuild/test_python3.13/tests/test_polar.py: 176 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2447: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) result = (less_equal(abs(x-y), atol + rtol * abs(y)) .pybuild/test_python3.13/tests/test_elasticity.py: 28279 warnings .pybuild/test_python3.13/tests/test_polar.py: 22 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2448: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) & isfinite(y) .pybuild/test_python3.13/tests/test_elasticity.py: 28279 warnings .pybuild/test_python3.13/tests/test_polar.py: 22 warnings /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2449: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) | (x == y)) .pybuild/test_python3.13/tests/test_elasticity.py: 28279 warnings .pybuild/test_python3.13/tests/test_polar.py: 22 warnings /usr/lib/python3/dist-packages/numpy/_core/_methods.py:73: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return umr_all(a, axis, dtype, out, keepdims) .pybuild/test_python3.13/tests/test_elasticity.py: 24 warnings /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:196: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return cls(0.5 * (np.dot(dfm.trans, dfm) - np.eye(3))) .pybuild/test_python3.13/tests/test_elasticity.py: 48 warnings /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:101: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return def_grad.det * np.dot(np.dot(def_grad.inv, self), def_grad.inv.trans) .pybuild/test_python3.13/tests/test_elasticity.py: 72 warnings /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:253: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) ft_dot_f = 2 * strain + np.eye(3) .pybuild/test_python3.13/tests/test_elasticity.py: 96 warnings .pybuild/test_python3.13/tests/test_polar.py: 6 warnings /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:110: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) new_tensor[abs(new_tensor) < tol] = 0 .pybuild/test_python3.13/tests/test_elasticity.py: 5940 warnings .pybuild/test_python3.13/tests/test_polar.py: 16 warnings /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:364: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) if (self - self.transpose(transpose_seq) > tol).any(): .pybuild/test_python3.13/tests/test_elasticity.py: 2970 warnings .pybuild/test_python3.13/tests/test_polar.py: 8 warnings /usr/lib/python3/dist-packages/numpy/_core/_methods.py:64: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return umr_any(a, axis, dtype, out, keepdims) .pybuild/test_python3.13/tests/test_elasticity.py: 2 warnings .pybuild/test_python3.13/tests/test_polar.py: 10 warnings /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:1021: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return vec if norm < 1e-8 else vec / norm .pybuild/test_python3.13/tests/test_elasticity.py: 2 warnings .pybuild/test_python3.13/tests/test_polar.py: 10 warnings /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:992: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) new_y = y - np.dot(new_x, y) * new_x .pybuild/test_python3.13/tests/test_elasticity.py: 49 warnings .pybuild/test_python3.13/tests/test_polar.py: 113 warnings /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:327: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return sum(self.transform(symm_op) for symm_op in symm_ops) / len(symm_ops) .pybuild/test_python3.13/tests/test_elasticity.py::test_from_deformations_and_stresses .pybuild/test_python3.13/tests/test_elasticity.py::test_from_deformations_and_stresses /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:48: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) return conv.wrap(result, to_scalar=False) .pybuild/test_python3.13/tests/test_elasticity.py::test_from_deformations_and_stresses /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/elasticity.py:324: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) raw=(compliance * 1000).voigt.tolist(), .pybuild/test_python3.13/tests/test_elasticity.py::test_from_deformations_and_stresses /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/elasticity.py:325: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) ieee_format=(compliance_ieee * 1000).round(0).voigt.tolist(), .pybuild/test_python3.13/tests/test_electrodes.py::test_InsertionDocs /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/electrode.py:304: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). d["last_updated"] = datetime.utcnow() .pybuild/test_python3.13/tests/test_electrodes.py: 12 warnings /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/electrode.py:540: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). "last_updated": datetime.utcnow(), .pybuild/test_python3.13/tests/test_polar.py::test_dielectric /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/polar.py:57: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) total = ionic_tensor + electronic_tensor .pybuild/test_python3.13/tests/test_polar.py::test_dielectric .pybuild/test_python3.13/tests/test_polar.py::test_dielectric .pybuild/test_python3.13/tests/test_polar.py::test_dielectric .pybuild/test_python3.13/tests/test_polar.py::test_dielectric /usr/lib/python3/dist-packages/numpy/_core/_methods.py:135: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) ret = umr_sum(arr, axis, dtype, out, keepdims, where=where) .pybuild/test_python3.13/tests/test_polar.py::test_piezoelectric /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/polar.py:109: DeprecationWarning: __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) total: BasePiezoTensor = ionic_tensor + electronic_tensor # type: ignore[assignment] .pybuild/test_python3.13/tests/test_provenance.py::test_from_snls .pybuild/test_python3.13/tests/test_provenance.py::test_from_snls .pybuild/test_python3.13/tests/test_provenance.py::test_from_snls /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/test_provenance.py:24: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). created_at=datetime.utcnow(), .pybuild/test_python3.13/tests/test_provenance.py::test_from_snls /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/test_provenance.py:58: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ assert doc.dict(exclude_none=True)["property_name"] == "provenance" .pybuild/test_python3.13/tests/test_structure_metadata.py::test_schema /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/test_structure_metadata.py:63: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ StructureMetadata.schema() .pybuild/test_python3.13/tests/test_thermo.py::test_from_entries .pybuild/test_python3.13/tests/test_thermo.py::test_from_entries .pybuild/test_python3.13/tests/test_thermo.py::test_from_entries .pybuild/test_python3.13/tests/test_thermo.py::test_from_entries .pybuild/test_python3.13/tests/test_thermo.py::test_from_entries /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/thermo.py:254: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). last_updated=d.get("last_updated", datetime.utcnow()), .pybuild/test_python3.13/tests/test_xrd.py::test_schema /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/test_xrd.py:45: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ XRDDoc.schema() .pybuild/test_python3.13/tests/vasp/test_materials.py::test_make_mat .pybuild/test_python3.13/tests/vasp/test_materials.py::test_make_deprecated_mat /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/vasp/test_materials.py:13: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "test_si_tasks.json.gz") as f: .pybuild/test_python3.13/tests/vasp/test_materials.py::test_schema /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/vasp/test_materials.py:48: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ MaterialsDoc.schema() .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_task_type /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/vasp/calc_types/utils.py:77: DeprecationWarning: NotImplemented should not be used in a boolean context num_kpt_labels = len(list(filter(None.__ne__, kpt_labels))) .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_validator /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/vasp/test_vasp.py:46: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "test_si_tasks.json.gz") as f: .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_validator_magmom /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/vasp/test_vasp.py:61: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "task_doc_mp-2766060.json.gz") as f: .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_validator_failed_symmetry /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/vasp/test_vasp.py:91: FutureWarning: We strongly discourage using implicit binary/text `mode`, and this would not be allowed after 2025-06-01. I.e. you should pass t/b in `mode`. with zopen(test_dir / "failed_elastic_task.json.gz", "r") as f: .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_ldau /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/vasp/test_vasp.py:106: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "test_task.json") as f: .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_ldau_validation /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/vasp/validation.py:182: UserWarning: Co without an oxidation state is initialized as low spin by default in Pymatgen. If this default behavior is not desired, please set the spin on the magmom on the site directly to ensure correct initialization. valid_ismear = valid_input_set.incar.get("ISMEAR", 1) .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_ldau_validation /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/vasp/validation.py:193: UserWarning: Co without an oxidation state is initialized as low spin by default in Pymatgen. If this default behavior is not desired, please set the spin on the magmom on the site directly to ensure correct initialization. valid_encut = valid_input_set.incar["ENCUT"] .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_ldau_validation /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/vasp/validation.py:278: UserWarning: Co without an oxidation state is initialized as low spin by default in Pymatgen. If this default behavior is not desired, please set the spin on the magmom on the site directly to ensure correct initialization. if valid_input_set.incar.get("LDAU", False) or len(input_hubbards) > 0: .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_ldau_validation /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/cpython3_3.13_emmet-core/build/emmet/core/vasp/validation.py:283: UserWarning: Co without an oxidation state is initialized as low spin by default in Pymatgen. If this default behavior is not desired, please set the spin on the magmom on the site directly to ensure correct initialization. valid_input_set.incar.get("LDAUU", []), .pybuild/test_python3.13/tests/vasp/test_vasp.py::test_potcar_stats_check /build/reproducible-path/python-emmet-core-0.84.2/.pybuild/test_python3.13/tests/vasp/test_vasp.py:133: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 with zopen(test_dir / "CoF_TaskDoc.json") as f: -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======= 167 passed, 23 skipped, 9 deselected, 405741 warnings in 58.57s ======== make[1]: Leaving directory '/build/reproducible-path/python-emmet-core-0.84.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-emmet-core/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-emmet-core' in '../python3-emmet-core_0.84.2-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-emmet-core_0.84.2-2_i386.buildinfo dpkg-genchanges --build=binary -O../python-emmet-core_0.84.2-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-emmet-core-0.84.2/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/110863 and its subdirectories I: Current time: Thu Apr 23 16:22:09 -12 2026 I: pbuilder-time-stamp: 1777004529 Fri Mar 21 21:59:11 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Fri Mar 21 21:59:11 UTC 2025 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Fri Mar 21 22:04:23 UTC 2025 I: Deleting $TMPDIR on ionos2-i386.debian.net. Fri Mar 21 22:04:23 UTC 2025 I: python-emmet-core_0.84.2-2_i386.changes: Format: 1.8 Date: Mon, 17 Feb 2025 10:33:39 +0100 Source: python-emmet-core Binary: python3-emmet-core Architecture: all Version: 0.84.2-2 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python3-emmet-core - Core models for the Materials Project (Python 3) Changes: python-emmet-core (0.84.2-2) unstable; urgency=medium . * python3-emmet-core Depends: python3-openmm Checksums-Sha1: a1c653a300e513010962d39ec7f2fc0d7b1d2bc5 11227 python-emmet-core_0.84.2-2_i386.buildinfo c4dabde919b5eccda6470a22f13732dfbd4eba2a 131624 python3-emmet-core_0.84.2-2_all.deb Checksums-Sha256: 6d1c5994d06354d1da7011f2bfc256779792f9042a8a572c3a8f1ffede7a9968 11227 python-emmet-core_0.84.2-2_i386.buildinfo a5cff69f3a39309886ae9353ae8fcd9dba042053dccf9a600e284bc2a20f5a9c 131624 python3-emmet-core_0.84.2-2_all.deb Files: 110536e17f72a30ee5cfbe2daaa66914 11227 python optional python-emmet-core_0.84.2-2_i386.buildinfo 230a486ab971b2ef7fa63216829cc82a 131624 python optional python3-emmet-core_0.84.2-2_all.deb Fri Mar 21 22:04:25 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_2-61134.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.TPb90HK9/python-emmet-core_0.84.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.TPb90HK9/python-emmet-core_0.84.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.TPb90HK9/python-emmet-core_0.84.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.TPb90HK9/b1/python-emmet-core_0.84.2-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.TPb90HK9/b2/python-emmet-core_0.84.2-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 231ms CPU time consumed: 232ms Fri Mar 21 22:04:25 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Fri Mar 21 22:04:25 UTC 2025 I: python-emmet-core from unstable built successfully and reproducibly on i386. Fri Mar 21 22:04:26 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Mar 21 22:04:26 UTC 2025 I: Submitting 12K b1/python-emmet-core_0.84.2-2_i386.buildinfo.asc Fri Mar 21 22:04:27 UTC 2025 I: Submitting 12K b2/python-emmet-core_0.84.2-2_i386.buildinfo.asc Fri Mar 21 22:04:28 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Mar 21 22:04:28 UTC 2025 I: Done submitting .buildinfo files. Fri Mar 21 22:04:28 UTC 2025 I: Removing signed python-emmet-core_0.84.2-2_i386.buildinfo.asc files: removed './b1/python-emmet-core_0.84.2-2_i386.buildinfo.asc' removed './b2/python-emmet-core_0.84.2-2_i386.buildinfo.asc'