Tue Mar 18 23:43:39 UTC 2025 I: starting to build sideretro/unstable/i386 on jenkins on '2025-03-18 23:43' Tue Mar 18 23:43:39 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/47064/console.log Tue Mar 18 23:43:39 UTC 2025 I: Downloading source for unstable/sideretro=1.1.6-2 --2025-03-18 23:43:39-- http://deb.debian.org/debian/pool/main/s/sideretro/sideretro_1.1.6-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2057 (2.0K) [text/prs.lines.tag] Saving to: ‘sideretro_1.1.6-2.dsc’ 0K .. 100% 278M=0s 2025-03-18 23:43:39 (278 MB/s) - ‘sideretro_1.1.6-2.dsc’ saved [2057/2057] Tue Mar 18 23:43:39 UTC 2025 I: sideretro_1.1.6-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sideretro Binary: sideretro Architecture: any Version: 1.1.6-2 Maintainer: Debian Med Packaging Team Uploaders: Daniela Moreira Mombach Homepage: https://github.com/galantelab/sideRETRO Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/sideretro Vcs-Git: https://salsa.debian.org/med-team/sideretro.git Build-Depends: check , cmake, debhelper-compat (= 13), libhts-dev, libsqlite3-dev, meson, pkgconf, python3-sphinx , zlib1g-dev Package-List: sideretro deb science optional arch=any Checksums-Sha1: 20a0572585b0b16ca71ed76b08b8fcbce3f33aca 2109112 sideretro_1.1.6.orig.tar.gz ded8eeaac08f4a3b1b857442d7bb1c8d9c396b24 7404 sideretro_1.1.6-2.debian.tar.xz Checksums-Sha256: 378b49030bef1627494c81bbd285d85f3b78843f691f68963bd6e703ae7bac20 2109112 sideretro_1.1.6.orig.tar.gz 7983353ab62b1d7c8f56a2fe6bacf59a9f710f8484883237f86cf9d8c0a4a6a2 7404 sideretro_1.1.6-2.debian.tar.xz Files: 2ee5b04044bcce8eda2bd8e5bfaa7ea9 2109112 sideretro_1.1.6.orig.tar.gz db19bfa56672d973269da32376814ae4 7404 sideretro_1.1.6-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEG4z2Vu87hEcvSPDngvv3BgsvfQAFAmfYZnEACgkQgvv3Bgsv fQA0Gw//SsDgUjUe//hxajGNFleALjSE5hEhO8FB6Dy2toTTLerprNBsdt5u7Khn 6BHVZPayyf1GOeDQdQNgttDr1VxekmO/seX6ajCkIkBCcpI17QE00NxUgXsX0bt5 RpJOeWwBFeX1DYLpaaSLXaHRiy+15iFCX5R2YHAfTjhf5yRMOBlwAq9DzKAdFWH9 xIrv6SKp7jMoaC3tjUg2xprZLTK18NQXZNufXVuPcfexxp1VZ2ZptpfvUvkeRvan YpMF/J/jMhtPHYwkhVyNWCd4nEp+cfspEGpw7fXpeiox6qlS10T++KxlnAHZf/Uy FVs9YqpDhpZss7kG9KJi9pN7WKoxsMERIMMvr/k2xDTTe0OPPjI5CACcxb9lr2F4 UUmwlSWscdm3ixUN8NcTc2ablxuYbvXdCuF+a6xkee4S6zK75NHQffWETA/8vQ2i r6F3JNoG7IrLs+UjUMUtEhzVla8RNentifOsmkkmjkMauXBTMPSIbqxhk6wnonGR eId5cm+JIDbiUHaAiMoWhICTF6iFzUH1VExmO43UfLj1acAaFF+xMkbWs/9sH5FC K7JzGgoMU4F7dVtLiimgxcLM3qKLaE4KYz1fVLmvWdvxFCZ9TCILUJZZSy2HyYYI xGEb31HZ7beVTm6VCA2VWwK/tr7p/KT2Ql/z7pUPMUNLyHEYTI8= =3hou -----END PGP SIGNATURE----- Tue Mar 18 23:43:39 UTC 2025 I: Checking whether the package is not for us Tue Mar 18 23:43:39 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net. Tue Mar 18 23:43:39 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Tue Mar 18 23:44:30 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 20 18:06:41 -12 2026 I: pbuilder-time-stamp: 1776751601 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [sideretro_1.1.6-2.dsc] I: copying [./sideretro_1.1.6.orig.tar.gz] I: copying [./sideretro_1.1.6-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./sideretro_1.1.6-2.dsc: unsupported subcommand dpkg-source: info: extracting sideretro in sideretro-1.1.6 dpkg-source: info: unpacking sideretro_1.1.6.orig.tar.gz dpkg-source: info: unpacking sideretro_1.1.6-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/84801/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='27eb2ce5aa2a487aa29194bba8e8e09f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='84801' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/pbuilderrc_vJ7d --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/b1 --logfile b1/build.log sideretro_1.1.6-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/84801/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: check, cmake, debhelper-compat (= 13), libhts-dev, libsqlite3-dev, meson, pkgconf, python3-sphinx, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19770 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on check; however: Package check is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} check{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsubunit-dev{a} libsubunit0{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl javascript-common krb5-locales libarchive-cpio-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix python3-pil wget 0 packages upgraded, 162 newly installed, 0 to remove and 0 not upgraded. Need to get 80.2 MB of archives. After unpacking 296 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.2-2 [859 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.7.0-1 [109 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.2-2 [2262 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.2-2 [1960 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.2-2 [746 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-7 [66.0 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-7 [876 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20241223 [164 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.46-2 [337 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.46-2 [117 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 file i386 1:5.46-2 [43.4 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-7 [301 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libsubunit0 i386 1.4.2-3+b1 [6584 B] Get: 36 http://deb.debian.org/debian unstable/main i386 libsubunit-dev i386 1.4.2-3+b1 [7624 B] Get: 37 http://deb.debian.org/debian unstable/main i386 check i386 0.15.2-3 [116 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 cmake-data all 3.31.6-1 [2268 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libicu76 i386 76.1-3 [9893 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.3+b1 [734 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libarchive13t64 i386 3.7.4-1.1 [390 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-5 [35.3 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1+b1 [24.6 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-5 [84.3 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 47 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-5 [355 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-5 [149 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libidn2-0 i386 2.3.8-2 [110 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-9 [20.8 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-9 [61.2 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libldap2 i386 2.6.9+dfsg-2 [206 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.8.0-1 [78.7 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.13.0~rc2-1 [426 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 librhash1 i386 1.4.5-1 [144 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.50.0-2 [163 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 cmake i386 3.31.6-1 [13.1 MB] Get: 67 http://deb.debian.org/debian unstable/main i386 comerr-dev i386 2.1-1.47.2-1+b1 [56.4 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-4 [539 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 74 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libgssrpc4t64 i386 1.21.3-5 [63.6 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libkadm5clnt-mit12 i386 1.21.3-5 [44.2 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libkdb5-10t64 i386 1.21.3-5 [45.6 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libkadm5srv-mit12 i386 1.21.3-5 [57.9 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 krb5-multidev i386 1.21.3-5 [126 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libbrotli-dev i386 1.1.0-2+b7 [313 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.11.0-1 [163 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.11.0-1 [29.9 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.13.0~rc2-1 [419 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libunbound8 i386 1.22.0-1+b1 [633 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libgnutls-dane0t64 i386 3.8.9-2 [453 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libgnutls-openssl27t64 i386 3.8.9-2 [453 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libidn2-dev i386 2.3.8-2 [104 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libp11-kit-dev i386 0.25.5-3 [208 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libtasn1-6-dev i386 4.20.0-2 [103 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-3 [329 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libgmp-dev i386 2:6.3.0+dfsg-3 [661 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 nettle-dev i386 3.10.1-1 [1335 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libgnutls28-dev i386 3.8.9-2 [1464 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libkrb5-dev i386 1.21.3-5 [16.1 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libldap-dev i386 2.6.9+dfsg-2 [332 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libnghttp3-dev i386 1.8.0-1 [104 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls-dev i386 1.11.0-1 [34.9 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libngtcp2-dev i386 1.11.0-1 [215 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libssl-dev i386 3.4.1-1 [2837 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 libzstd-dev i386 1.5.7+dfsg-1 [377 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libcurl4-gnutls-dev i386 8.13.0~rc2-1 [554 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libdeflate-dev i386 1.23-1+b1 [57.5 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-2 [70.9 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 libhts3t64 i386 1.21+ds-1 [506 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 liblzma-dev i386 5.6.4-1 [335 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 libhts-dev i386 1.21+ds-1 [1725 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libjson-perl all 4.10000-1 [87.5 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 libsqlite3-dev i386 3.46.1-2 [1192 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 ninja-build i386 1.12.1-1 [153 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 137 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 meson all 1.7.0-1 [639 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 python3-babel all 2.17.0-1 [117 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 147 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer i386 3.4.1-1+b1 [127 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 python3-roman all 5.0-1 [10.6 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.10-1 [42.0 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 python3-imagesize all 1.4.1-1 [6688 B] Get: 154 http://deb.debian.org/debian unstable/main i386 python3-markupsafe i386 2.1.5-1+b3 [14.0 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 python3-jinja2 all 3.1.5-2 [107 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 2.3.0-2 [114 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 160 http://deb.debian.org/debian unstable/main i386 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 161 http://deb.debian.org/debian unstable/main i386 sphinx-common all 8.1.3-5 [617 kB] Get: 162 http://deb.debian.org/debian unstable/main i386 python3-sphinx all 8.1.3-5 [468 kB] Fetched 80.2 MB in 1s (86.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19770 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.7.0-1_i386.deb ... Unpacking libexpat1:i386 (2.7.0-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_i386.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:i386 (3.13.2-2) ... Setting up libexpat1:i386 (2.7.0-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20104 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_i386.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../4-libffi8_3.4.7-1_i386.deb ... Unpacking libffi8:i386 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../6-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_i386.deb ... Unpacking python3.13 (3.13.2-2) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_i386.deb ... Unpacking libpython3-stdlib:i386 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21114 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.2-2_i386.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package sgml-base. 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Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libsubunit0:i386. Preparing to unpack .../021-libsubunit0_1.4.2-3+b1_i386.deb ... Unpacking libsubunit0:i386 (1.4.2-3+b1) ... Selecting previously unselected package libsubunit-dev:i386. Preparing to unpack .../022-libsubunit-dev_1.4.2-3+b1_i386.deb ... Unpacking libsubunit-dev:i386 (1.4.2-3+b1) ... Selecting previously unselected package check:i386. Preparing to unpack .../023-check_0.15.2-3_i386.deb ... Unpacking check:i386 (0.15.2-3) ... Selecting previously unselected package cmake-data. Preparing to unpack .../024-cmake-data_3.31.6-1_all.deb ... Unpacking cmake-data (3.31.6-1) ... Selecting previously unselected package libicu76:i386. Preparing to unpack .../025-libicu76_76.1-3_i386.deb ... Unpacking libicu76:i386 (76.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../026-libxml2_2.12.7+dfsg+really2.9.14-0.3+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Selecting previously unselected package libarchive13t64:i386. Preparing to unpack .../027-libarchive13t64_3.7.4-1.1_i386.deb ... Unpacking libarchive13t64:i386 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../028-libbrotli1_1.1.0-2+b7_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../029-libkrb5support0_1.21.3-5_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-5) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../030-libcom-err2_1.47.2-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.2-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../031-libk5crypto3_1.21.3-5_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:i386. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sideretro-1.1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sideretro_1.1.6-2_source.changes dpkg-buildpackage: info: source package sideretro dpkg-buildpackage: info: source version 1.1.6-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Daniela Moreira Mombach dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/i386-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/sideretro-1.1.6 Build dir: /build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu Build type: native build Project name: sideRETRO Project version: 1.1.6 C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-19) 14.2.0") C linker for the host machine: cc ld.bfd 2.44 Host machine cpu family: x86 Host machine cpu: i686 Configuring config.h.in using configuration Library m found: YES Library dl found: YES Run-time dependency threads found: YES Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency zlib found: YES 1.3.1 Run-time dependency sqlite3 found: YES 3.46.1 Run-time dependency htslib found: YES 1.21 Run-time dependency check found: YES 0.15.2 Program sphinx-build found: YES (/usr/bin/sphinx-build) Message: Generate man page alongside the executable Build targets in project: 5 sideRETRO 1.1.6 User defined options buildtype : plain libdir : lib/i386-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build cd obj-i686-linux-gnu && LC_ALL=C.UTF-8 ninja -j22 -v [1/70] /usr/bin/meson --internal vcstagger config.h.in config.h 1.1.6 /build/reproducible-path/sideretro-1.1.6 @version@ '(.*)' git describe --tags --dirty=+ [2/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/io.c.o -MF src/libsider.a.p/io.c.o.d -o src/libsider.a.p/io.c.o -c ../src/io.c [3/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/chr.c.o -MF src/libsider.a.p/chr.c.o.d -o src/libsider.a.p/chr.c.o -c ../src/chr.c [4/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/gz.c.o -MF src/libsider.a.p/gz.c.o.d -o src/libsider.a.p/gz.c.o -c ../src/gz.c [5/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/fasta.c.o -MF src/libsider.a.p/fasta.c.o.d -o src/libsider.a.p/fasta.c.o -c ../src/fasta.c [6/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/dbscan.c.o -MF src/libsider.a.p/dbscan.c.o.d -o src/libsider.a.p/dbscan.c.o -c ../src/dbscan.c [7/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/list.c.o -MF src/libsider.a.p/list.c.o.d -o src/libsider.a.p/list.c.o -c ../src/list.c [8/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/exon.c.o -MF src/libsider.a.p/exon.c.o.d -o src/libsider.a.p/exon.c.o -c ../src/exon.c [9/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/array.c.o -MF src/libsider.a.p/array.c.o.d -o src/libsider.a.p/array.c.o -c ../src/array.c [10/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/bed.c.o -MF src/libsider.a.p/bed.c.o.d -o src/libsider.a.p/bed.c.o -c ../src/bed.c [11/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/log.c.o -MF src/libsider.a.p/log.c.o.d -o src/libsider.a.p/log.c.o -c ../src/log.c [12/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/blacklist.c.o -MF src/libsider.a.p/blacklist.c.o.d -o src/libsider.a.p/blacklist.c.o -c ../src/blacklist.c In file included from ../src/blacklist.c:24: ../src/blacklist.c: In function ‘blacklist_index_dump_from_bed’: ../src/blacklist.c:170:36: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 7 has type ‘long int’ [-Wformat=] 170 | log_debug ("Index blacklist '%s' at %s:%zu-%zu", name, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | chr_std, entry->chrom_start, entry->chrom_end); | ~~~~~~~~~~~~~~~~~~ | | | long int ../src/log.h:38:68: note: in definition of macro ‘log_debug’ 38 | #define log_debug(...) log_log (LOG_DEBUG, __FILENAME__, __LINE__, __VA_ARGS__) | ^~~~~~~~~~~ ../src/blacklist.c:170:66: note: format string is defined here 170 | log_debug ("Index blacklist '%s' at %s:%zu-%zu", name, | ~~^ | | | unsigned int | %lu ../src/blacklist.c:170:36: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 8 has type ‘long int’ [-Wformat=] 170 | log_debug ("Index blacklist '%s' at %s:%zu-%zu", name, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | chr_std, entry->chrom_start, entry->chrom_end); | ~~~~~~~~~~~~~~~~ | | | long int ../src/log.h:38:68: note: in definition of macro ‘log_debug’ 38 | #define log_debug(...) log_log (LOG_DEBUG, __FILENAME__, __LINE__, __VA_ARGS__) | ^~~~~~~~~~~ ../src/blacklist.c:170:70: note: format string is defined here 170 | log_debug ("Index blacklist '%s' at %s:%zu-%zu", name, | ~~^ | | | unsigned int | %lu [13/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/logger.c.o -MF src/libsider.a.p/logger.c.o.d -o src/libsider.a.p/logger.c.o -c ../src/logger.c [14/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/bitree.c.o -MF src/libsider.a.p/bitree.c.o.d -o src/libsider.a.p/bitree.c.o -c ../src/bitree.c [15/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/dedup.c.o -MF src/libsider.a.p/dedup.c.o.d -o src/libsider.a.p/dedup.c.o -c ../src/dedup.c [16/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/db_merge.c.o -MF src/libsider.a.p/db_merge.c.o.d -o src/libsider.a.p/db_merge.c.o -c ../src/db_merge.c [17/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/ibitree.c.o -MF src/libsider.a.p/ibitree.c.o.d -o src/libsider.a.p/ibitree.c.o -c ../src/ibitree.c [18/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/correlation.c.o -MF src/libsider.a.p/correlation.c.o.d -o src/libsider.a.p/correlation.c.o -c ../src/correlation.c [19/70] cc -Isrc/sider.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ src/sider.p/main.c.o -MF src/sider.p/main.c.o.d -o src/sider.p/main.c.o -c ../src/main.c [20/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/make_vcf.c.o -MF src/libsider.a.p/make_vcf.c.o.d -o src/libsider.a.p/make_vcf.c.o -c ../src/make_vcf.c [21/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/cluster.c.o -MF src/libsider.a.p/cluster.c.o.d -o src/libsider.a.p/cluster.c.o -c ../src/cluster.c [22/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/sam.c.o -MF src/libsider.a.p/sam.c.o.d -o src/libsider.a.p/sam.c.o -c ../src/sam.c [23/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/gff.c.o -MF src/libsider.a.p/gff.c.o.d -o src/libsider.a.p/gff.c.o -c ../src/gff.c [24/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/set.c.o -MF src/libsider.a.p/set.c.o.d -o src/libsider.a.p/set.c.o -c ../src/set.c [25/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/str.c.o -MF src/libsider.a.p/str.c.o.d -o src/libsider.a.p/str.c.o -c ../src/str.c [26/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/thpool.c.o -MF src/libsider.a.p/thpool.c.o.d -o src/libsider.a.p/thpool.c.o -c ../src/thpool.c [27/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/abnormal.c.o -MF src/libsider.a.p/abnormal.c.o.d -o src/libsider.a.p/abnormal.c.o -c ../src/abnormal.c [28/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/hash.c.o -MF src/libsider.a.p/hash.c.o.d -o src/libsider.a.p/hash.c.o -c ../src/hash.c [29/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/wrapper.c.o -MF src/libsider.a.p/wrapper.c.o.d -o src/libsider.a.p/wrapper.c.o -c ../src/wrapper.c [30/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/utils.c.o -MF src/libsider.a.p/utils.c.o.d -o src/libsider.a.p/utils.c.o -c ../src/utils.c [31/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/process_sample.c.o -MF src/libsider.a.p/process_sample.c.o.d -o src/libsider.a.p/process_sample.c.o -c ../src/process_sample.c [32/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/genotype.c.o -MF src/libsider.a.p/genotype.c.o.d -o src/libsider.a.p/genotype.c.o -c ../src/genotype.c [33/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_chr.c.o -MF tests/check_sider.p/check_sider_chr.c.o.d -o tests/check_sider.p/check_sider_chr.c.o -c ../tests/check_sider_chr.c [34/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_correlation.c.o -MF tests/check_sider.p/check_sider_correlation.c.o.d -o tests/check_sider.p/check_sider_correlation.c.o -c ../tests/check_sider_correlation.c [35/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_bed.c.o -MF tests/check_sider.p/check_sider_bed.c.o.d -o tests/check_sider.p/check_sider_bed.c.o -c ../tests/check_sider_bed.c [36/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/retrocopy.c.o -MF src/libsider.a.p/retrocopy.c.o.d -o src/libsider.a.p/retrocopy.c.o -c ../src/retrocopy.c [37/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/merge_call.c.o -MF src/libsider.a.p/merge_call.c.o.d -o src/libsider.a.p/merge_call.c.o -c ../src/merge_call.c [38/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/vcf.c.o -MF src/libsider.a.p/vcf.c.o.d -o src/libsider.a.p/vcf.c.o -c ../src/vcf.c In file included from ../src/vcf.c:30: ../src/vcf.c: In function ‘vcf_print_body’: ../src/vcf.c:578:67: warning: format ‘%li’ expects argument of type ‘long int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 578 | log_warn ("Retrocopy at %s:%li is outside contig range %li", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 | b.chr, b.insertion_point, seq->len); | ~~~~~~~~ | | | size_t {aka unsigned int} ../src/log.h:40:68: note: in definition of macro ‘log_warn’ 40 | #define log_warn(...) log_log (LOG_WARN, __FILENAME__, __LINE__, __VA_ARGS__) | ^~~~~~~~~~~ ../src/vcf.c:578:114: note: format string is defined here 578 | log_warn ("Retrocopy at %s:%li is outside contig range %li", | ~~^ | | | long int | %i [39/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_cluster.c.o -MF tests/check_sider.p/check_sider_cluster.c.o.d -o tests/check_sider.p/check_sider_cluster.c.o -c ../tests/check_sider_cluster.c [40/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_abnormal.c.o -MF tests/check_sider.p/check_sider_abnormal.c.o.d -o tests/check_sider.p/check_sider_abnormal.c.o -c ../tests/check_sider_abnormal.c [41/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/db.c.o -MF src/libsider.a.p/db.c.o.d -o src/libsider.a.p/db.c.o -c ../src/db.c [42/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_db_merge.c.o -MF tests/check_sider.p/check_sider_db_merge.c.o.d -o tests/check_sider.p/check_sider_db_merge.c.o -c ../tests/check_sider_db_merge.c [43/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_bitree.c.o -MF tests/check_sider.p/check_sider_bitree.c.o.d -o tests/check_sider.p/check_sider_bitree.c.o -c ../tests/check_sider_bitree.c [44/70] rm -f src/libsider.a && gcc-ar csrDT src/libsider.a src/libsider.a.p/abnormal.c.o src/libsider.a.p/array.c.o src/libsider.a.p/bed.c.o src/libsider.a.p/bitree.c.o src/libsider.a.p/blacklist.c.o src/libsider.a.p/chr.c.o src/libsider.a.p/cluster.c.o src/libsider.a.p/correlation.c.o src/libsider.a.p/db.c.o src/libsider.a.p/db_merge.c.o src/libsider.a.p/dbscan.c.o src/libsider.a.p/dedup.c.o src/libsider.a.p/exon.c.o src/libsider.a.p/fasta.c.o src/libsider.a.p/genotype.c.o src/libsider.a.p/gff.c.o src/libsider.a.p/gz.c.o src/libsider.a.p/hash.c.o src/libsider.a.p/ibitree.c.o src/libsider.a.p/io.c.o src/libsider.a.p/list.c.o src/libsider.a.p/log.c.o src/libsider.a.p/logger.c.o src/libsider.a.p/make_vcf.c.o src/libsider.a.p/merge_call.c.o src/libsider.a.p/process_sample.c.o src/libsider.a.p/retrocopy.c.o src/libsider.a.p/sam.c.o src/libsider.a.p/set.c.o src/libsider.a.p/str.c.o src/libsider.a.p/thpool.c.o src/libsider.a.p/utils.c.o src/libsider.a.p/vcf.c.o src/libsider.a.p/wrapper.c.o [45/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_blacklist.c.o -MF tests/check_sider.p/check_sider_blacklist.c.o.d -o tests/check_sider.p/check_sider_blacklist.c.o -c ../tests/check_sider_blacklist.c [46/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_dedup.c.o -MF tests/check_sider.p/check_sider_dedup.c.o.d -o tests/check_sider.p/check_sider_dedup.c.o -c ../tests/check_sider_dedup.c [47/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_dbscan.c.o -MF tests/check_sider.p/check_sider_dbscan.c.o.d -o tests/check_sider.p/check_sider_dbscan.c.o -c ../tests/check_sider_dbscan.c [48/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_process_sample.c.o -MF tests/check_sider.p/check_sider_process_sample.c.o.d -o tests/check_sider.p/check_sider_process_sample.c.o -c ../tests/check_sider_process_sample.c [49/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_db.c.o -MF tests/check_sider.p/check_sider_db.c.o.d -o tests/check_sider.p/check_sider_db.c.o -c ../tests/check_sider_db.c [50/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_genotype.c.o -MF tests/check_sider.p/check_sider_genotype.c.o.d -o tests/check_sider.p/check_sider_genotype.c.o -c ../tests/check_sider_genotype.c [51/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_array.c.o -MF tests/check_sider.p/check_sider_array.c.o.d -o tests/check_sider.p/check_sider_array.c.o -c ../tests/check_sider_array.c [52/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_io.c.o -MF tests/check_sider.p/check_sider_io.c.o.d -o tests/check_sider.p/check_sider_io.c.o -c ../tests/check_sider_io.c [53/70] cc -o src/sider src/sider.p/main.c.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group src/libsider.a -pthread /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libhts.so /usr/lib/i386-linux-gnu/libz.so -lm -ldl -Wl,--end-group [54/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_main.c.o -MF tests/check_sider.p/check_sider_main.c.o.d -o tests/check_sider.p/check_sider_main.c.o -c ../tests/check_sider_main.c [55/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_retrocopy.c.o -MF tests/check_sider.p/check_sider_retrocopy.c.o.d -o tests/check_sider.p/check_sider_retrocopy.c.o -c ../tests/check_sider_retrocopy.c [56/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_fasta.c.o -MF tests/check_sider.p/check_sider_fasta.c.o.d -o tests/check_sider.p/check_sider_fasta.c.o -c ../tests/check_sider_fasta.c [57/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_vcf.c.o -MF tests/check_sider.p/check_sider_vcf.c.o.d -o tests/check_sider.p/check_sider_vcf.c.o -c ../tests/check_sider_vcf.c [58/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_ibitree.c.o -MF tests/check_sider.p/check_sider_ibitree.c.o.d -o tests/check_sider.p/check_sider_ibitree.c.o -c ../tests/check_sider_ibitree.c [59/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_exon.c.o -MF tests/check_sider.p/check_sider_exon.c.o.d -o tests/check_sider.p/check_sider_exon.c.o -c ../tests/check_sider_exon.c [60/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_gff.c.o -MF tests/check_sider.p/check_sider_gff.c.o.d -o tests/check_sider.p/check_sider_gff.c.o -c ../tests/check_sider_gff.c [61/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_list.c.o -MF tests/check_sider.p/check_sider_list.c.o.d -o tests/check_sider.p/check_sider_list.c.o -c ../tests/check_sider_list.c [62/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_sam.c.o -MF tests/check_sider.p/check_sider_sam.c.o.d -o tests/check_sider.p/check_sider_sam.c.o -c ../tests/check_sider_sam.c [63/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_gz.c.o -MF tests/check_sider.p/check_sider_gz.c.o.d -o tests/check_sider.p/check_sider_gz.c.o -c ../tests/check_sider_gz.c [64/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_set.c.o -MF tests/check_sider.p/check_sider_set.c.o.d -o tests/check_sider.p/check_sider_set.c.o -c ../tests/check_sider_set.c [65/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_str.c.o -MF tests/check_sider.p/check_sider_str.c.o.d -o tests/check_sider.p/check_sider_str.c.o -c ../tests/check_sider_str.c [66/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_wrapper.c.o -MF tests/check_sider.p/check_sider_wrapper.c.o.d -o tests/check_sider.p/check_sider_wrapper.c.o -c ../tests/check_sider_wrapper.c ../tests/check_sider_wrapper.c: In function ‘test_xfprintf_fn’: ../tests/check_sider_wrapper.c:281:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 281 | fread (buf, sizeof (char), str_size, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../tests/check_sider_wrapper.c: In function ‘test_xfflush_fn’: ../tests/check_sider_wrapper.c:180:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | fread (buf, sizeof (char), str_size, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [67/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_hash.c.o -MF tests/check_sider.p/check_sider_hash.c.o.d -o tests/check_sider.p/check_sider_hash.c.o -c ../tests/check_sider_hash.c [68/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_utils.c.o -MF tests/check_sider.p/check_sider_utils.c.o.d -o tests/check_sider.p/check_sider_utils.c.o -c ../tests/check_sider_utils.c [69/70] cc -o tests/check_sider tests/check_sider.p/check_sider_abnormal.c.o tests/check_sider.p/check_sider_array.c.o tests/check_sider.p/check_sider_bed.c.o tests/check_sider.p/check_sider_bitree.c.o tests/check_sider.p/check_sider_blacklist.c.o tests/check_sider.p/check_sider_chr.c.o tests/check_sider.p/check_sider_cluster.c.o tests/check_sider.p/check_sider_correlation.c.o tests/check_sider.p/check_sider_db.c.o tests/check_sider.p/check_sider_db_merge.c.o tests/check_sider.p/check_sider_dbscan.c.o tests/check_sider.p/check_sider_dedup.c.o tests/check_sider.p/check_sider_exon.c.o tests/check_sider.p/check_sider_fasta.c.o tests/check_sider.p/check_sider_genotype.c.o tests/check_sider.p/check_sider_gff.c.o tests/check_sider.p/check_sider_gz.c.o tests/check_sider.p/check_sider_hash.c.o tests/check_sider.p/check_sider_ibitree.c.o tests/check_sider.p/check_sider_io.c.o tests/check_sider.p/check_sider_list.c.o tests/check_sider.p/check_sider_main.c.o tests/check_sider.p/check_sider_process_sample.c.o tests/check_sider.p/check_sider_retrocopy.c.o tests/check_sider.p/check_sider_sam.c.o tests/check_sider.p/check_sider_set.c.o tests/check_sider.p/check_sider_str.c.o tests/check_sider.p/check_sider_utils.c.o tests/check_sider.p/check_sider_vcf.c.o tests/check_sider.p/check_sider_wrapper.c.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group src/libsider.a -pthread /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libhts.so /usr/lib/i386-linux-gnu/libz.so -lm -ldl /usr/lib/i386-linux-gnu/libcheck_pic.a -lrt /usr/lib/i386-linux-gnu/libsubunit.so -Wl,--end-group [70/70] /usr/bin/sphinx-build -b man /build/reproducible-path/sideretro-1.1.6/docs /build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu/docs Running Sphinx v8.1.3 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). loading translations [en]... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. building [mo]: targets for 0 po files that are out of date writing output... building [man]: all manpages updating environment: [new config] 8 added, 0 changed, 0 removed reading sources... [ 12%] authors reading sources... [ 25%] index reading sources... [ 38%] install reading sources... [ 50%] intro reading sources... [ 62%] method reading sources... [ 75%] result reading sources... [ 88%] retrocopy reading sources... [100%] usage looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/sideretro-1.1.6/docs/index.rst: WARNING: document isn't included in any toctree done preparing documents... done copying assets... copying assets: done writing... sider.1 { } done build succeeded, 2 warnings. The manual pages are in docs. dh_auto_test cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=22 meson test --verbose ninja: Entering directory `/build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu' [1/65] Generating config.h with a custom command 1/1 all RUNNING >>> UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=72 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 /build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu/tests/check_sider ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― Running suite(s): ProcessSample ok 1 - ../tests/check_sider_process_sample.c:Core:test_sider: Passed List ok 2 - ../tests/check_sider_list.c:Core:test_list_new: Passed ok 3 - ../tests/check_sider_list.c:Core:test_list_ins_prev: Passed ok 4 - ../tests/check_sider_list.c:Core:test_list_ins_next: Passed ok 5 - ../tests/check_sider_list.c:Core:test_list_ins_prev_link: Passed ok 6 - ../tests/check_sider_list.c:Core:test_list_ins_next_link: Passed ok 7 - ../tests/check_sider_list.c:Core:test_list_remove: Passed ok 8 - ../tests/check_sider_list.c:Core:test_list_remove_link: Passed ok 9 - ../tests/check_sider_list.c:Core:test_list_foreach: Passed Hash ok 10 - ../tests/check_sider_hash.c:Core:test_hash_free: Passed ok 11 - ../tests/check_sider_hash.c:Core:test_hash_insert: Passed ok 12 - ../tests/check_sider_hash.c:Core:test_hash_lookup: Passed ok 13 - ../tests/check_sider_hash.c:Core:test_hash_replace: Passed ok 14 - ../tests/check_sider_hash.c:Core:test_hash_remove: Passed ok 15 - ../tests/check_sider_hash.c:Core:test_hash_contains: Passed ok 16 - ../tests/check_sider_hash.c:Core:test_hash_int: Passed ok 17 - ../tests/check_sider_hash.c:Core:test_hash_direct: Passed ok 18 - ../tests/check_sider_hash.c:Core:test_hash_many_insertions: Passed ok 19 - ../tests/check_sider_hash.c:Misc:test_hash_foreach: Passed ok 20 - ../tests/check_sider_hash.c:Misc:test_hash_iter: Passed ok 21 - ../tests/check_sider_hash.c:Misc:test_hash_get_keys_as_list: Passed ok 22 - ../tests/check_sider_hash.c:Misc:test_hash_get_values_as_list: Passed ok 23 - ../tests/check_sider_hash.c:Misc:test_hash_get_keys_as_array: Passed ok 24 - ../tests/check_sider_hash.c:Misc:test_hash_get_values_as_array: Passed Array ok 25 - ../tests/check_sider_array.c:CoreFree:test_array: Passed ok 26 - ../tests/check_sider_array.c:CoreFree:test_array_uniq: Passed ok 27 - ../tests/check_sider_array.c:CoreFree:test_array_find_with_equal_fun: Passed ok 28 - ../tests/check_sider_array.c:CoreNull:test_array_find: Passed ok 29 - ../tests/check_sider_array.c:CoreNull:test_array_remove: Passed ok 30 - ../tests/check_sider_array.c:CoreNull:test_array_remove_index: Passed ok 31 - ../tests/check_sider_array.c:Free:test_array_no_free_segment: Passed Utils ok 32 - ../tests/check_sider_utils.c:Core:test_fequal: Passed ok 33 - ../tests/check_sider_utils.c:Core:test_equalstring: Passed ok 34 - ../tests/check_sider_utils.c:Core:test_casequalstring: Passed ok 35 - ../tests/check_sider_utils.c:Core:test_cmpstringp: Passed ok 36 - ../tests/check_sider_utils.c:Core:test_casecmpstringp: Passed ok 37 - ../tests/check_sider_utils.c:Core:test_chomp: Passed ok 38 - ../tests/check_sider_utils.c:Core:test_trimc: Passed ok 39 - ../tests/check_sider_utils.c:Core:test_trim: Passed ok 40 - ../tests/check_sider_utils.c:Core:test_upper: Passed ok 41 - ../tests/check_sider_utils.c:Core:test_lower: Passed ok 42 - ../tests/check_sider_utils.c:Core:test_path_dir: Passed ok 43 - ../tests/check_sider_utils.c:Core:test_path_file: Passed ok 44 - ../tests/check_sider_utils.c:Core:test_which: Passed ok 45 - ../tests/check_sider_utils.c:Core:test_exists: Passed ok 46 - ../tests/check_sider_utils.c:Core:test_xstrdup_concat: Passed ok 47 - ../tests/check_sider_utils.c:Core:test_xasprintf_concat: Passed ok 48 - ../tests/check_sider_utils.c:Core:test_mkdir_p: Passed ok 49 - ../tests/check_sider_utils.c:Core:test_setup_signal: Passed ok 50 - ../tests/check_sider_utils.c:Core:test_buf_expand: Passed ok 51 - ../tests/check_sider_utils.c:Core:test_entry_size: Passed SAM ok 52 - ../tests/check_sider_sam.c:Core:test_sam_to_bam: Passed ok 53 - ../tests/check_sider_sam.c:Core:test_sam_to_bam_fp: Passed ok 54 - ../tests/check_sider_sam.c:Core:test_sam_test_sorted_order: Passed BiTree ok 55 - ../tests/check_sider_bitree.c:Core:test_bitree: Passed IBiTree ok 56 - ../tests/check_sider_ibitree.c:Core:test_ibitree_insert: Passed ok 57 - ../tests/check_sider_ibitree.c:Core:test_ibitree_lookup: Passed ok 58 - ../tests/check_sider_ibitree.c:Core:test_ibitree_lookup_frac: Passed ok 59 - ../tests/check_sider_ibitree.c:Core:test_ibitree_lookup_either: Passed String ok 60 - ../tests/check_sider_str.c:Core:test_string_new: Passed ok 61 - ../tests/check_sider_str.c:Core:test_string_sized_new: Passed ok 62 - ../tests/check_sider_str.c:Core:test_string_set: Passed ok 63 - ../tests/check_sider_str.c:Core:test_string_concat: Passed ok 64 - ../tests/check_sider_str.c:Core:test_string_printf: Passed ok 65 - ../tests/check_sider_str.c:Core:test_string_concat_printf: Passed ok 66 - ../tests/check_sider_str.c:Core:test_string_free: Passed ok 67 - ../tests/check_sider_str.c:Core:test_string_clear: Passed DB ok 68 - ../tests/check_sider_db.c:Core:test_db_open: Passed ok 69 - ../tests/check_sider_db.c:Core:test_db_exec: Passed ok 70 - ../tests/check_sider_db.c:Core:test_db_prepare: Passed ok 71 - ../tests/check_sider_db.c:Core:test_db_schema: Passed ok 72 - ../tests/check_sider_db.c:Abort:test_db_open_abort: Passed ok 73 - ../tests/check_sider_db.c:Abort:test_db_close_abort: Passed ok 74 - ../tests/check_sider_db.c:Abort:test_db_exec_abort: Passed ok 75 - ../tests/check_sider_db.c:Abort:test_db_prepare_abort: Passed ok 76 - ../tests/check_sider_db.c:Abort:test_db_step_abort: Passed ok 77 - ../tests/check_sider_db.c:Abort:test_db_reset_abort: Passed ok 78 - ../tests/check_sider_db.c:Abort:test_db_bind_int_abort: Passed ok 79 - ../tests/check_sider_db.c:Abort:test_db_bind_int64_abort: Passed ok 80 - ../tests/check_sider_db.c:Abort:test_db_bind_double_abort: Passed ok 81 - ../tests/check_sider_db.c:Abort:test_db_bind_text_abort: Passed ok 82 - ../tests/check_sider_db.c:Abort:test_db_column_int_abort: Passed ok 83 - ../tests/check_sider_db.c:Abort:test_db_column_int64_abort: Passed ok 84 - ../tests/check_sider_db.c:Abort:test_db_column_double_abort: Passed ok 85 - ../tests/check_sider_db.c:Abort:test_db_column_text_abort: Passed Chr ok 86 - ../tests/check_sider_chr.c:Core:test_chr_std_lookup: Passed Exon ok 87 - ../tests/check_sider_exon.c:Core:test_exon_tree_index_dump: Passed ok 88 - ../tests/check_sider_exon.c:Core:test_exon_tree_lookup_dump: Passed Abnormal ok 89 - ../tests/check_sider_abnormal.c:Core:test_abnormal_filter_sorted: Passed ok 90 - ../tests/check_sider_abnormal.c:Core:test_abnormal_filter_unsorted: Passed GFF ok 91 - ../tests/check_sider_gff.c:Core:test_gff_header: Passed ok 92 - ../tests/check_sider_gff.c:Core:test_gff_read: Passed ok 93 - ../tests/check_sider_gff.c:Core:test_gff_filter: Passed ok 94 - ../tests/check_sider_gff.c:Core:test_gff_looks_like_gff_file: Passed ok 95 - ../tests/check_sider_gff.c:Abort:test_open_fatal: Passed ok 96 - ../tests/check_sider_gff.c:Abort:test_seqname_fatal: Passed ok 97 - ../tests/check_sider_gff.c:Abort:test_source_fatal: Passed ok 98 - ../tests/check_sider_gff.c:Abort:test_feature_fatal: Passed ok 99 - ../tests/check_sider_gff.c:Abort:test_start_fatal: Passed ok 100 - ../tests/check_sider_gff.c:Abort:test_end_fatal: Passed ok 101 - ../tests/check_sider_gff.c:Abort:test_score_fatal: Passed ok 102 - ../tests/check_sider_gff.c:Abort:test_strand_fatal: Passed ok 103 - ../tests/check_sider_gff.c:Abort:test_frame_fatal: Passed ok 104 - ../tests/check_sider_gff.c:Abort:test_key_value_fatal: Passed ok 105 - ../tests/check_sider_gff.c:Abort:test_close_fatal: Passed IO ok 106 - ../tests/check_sider_io.c:Core:test_read_file_lines: Passed DBSCAN ok 107 - ../tests/check_sider_dbscan.c:Core:test_dbscan: Passed Cluster ok 108 - ../tests/check_sider_cluster.c:Core:test_cluster_without_genotype_support: Passed ok 109 - ../tests/check_sider_cluster.c:Core:test_cluster_with_genotype_support: Passed Wrapper ok 110 - ../tests/check_sider_wrapper.c:Core:test_xmalloc: Passed ok 111 - ../tests/check_sider_wrapper.c:Core:test_xcalloc: Passed ok 112 - ../tests/check_sider_wrapper.c:Core:test_xrealloc: Passed ok 113 - ../tests/check_sider_wrapper.c:Core:test_xstrdup: Passed ok 114 - ../tests/check_sider_wrapper.c:Core:test_xfree: Passed ok 115 - ../tests/check_sider_wrapper.c:Core:test_xfopen: Passed ok 116 - ../tests/check_sider_wrapper.c:Core:test_xfdopen: Passed ok 117 - ../tests/check_sider_wrapper.c:Core:test_xfclose: Passed ok 118 - ../tests/check_sider_wrapper.c:Core:test_xfflush: Passed ok 119 - ../tests/check_sider_wrapper.c:Core:test_xpopen: Passed ok 120 - ../tests/check_sider_wrapper.c:Core:test_xmkdir: Passed ok 121 - ../tests/check_sider_wrapper.c:Core:test_xasprintf: Passed ok 122 - ../tests/check_sider_wrapper.c:Core:test_xfprintf: Passed ok 123 - ../tests/check_sider_wrapper.c:Core:test_xsigaction: Passed ok 124 - ../tests/check_sider_wrapper.c:Abort:test_xfopen_rw_abort: Passed ok 125 - ../tests/check_sider_wrapper.c:Abort:test_xfopen_w_abort: Passed ok 126 - ../tests/check_sider_wrapper.c:Abort:test_xfopen_r_abort: Passed ok 127 - ../tests/check_sider_wrapper.c:Abort:test_xfdopen_rw_abort: Passed ok 128 - ../tests/check_sider_wrapper.c:Abort:test_xfdopen_w_abort: Passed ok 129 - ../tests/check_sider_wrapper.c:Abort:test_xfdopen_r_abort: Passed ok 130 - ../tests/check_sider_wrapper.c:Abort:test_xmkdir_abort: Passed ok 131 - ../tests/check_sider_wrapper.c:Abort:test_xsigaction_abort: Passed ok 132 - ../tests/check_sider_wrapper.c:Abort:test_xpopen_r_abort: Passed ok 133 - ../tests/check_sider_wrapper.c:Abort:test_xpopen_w_abort: Passed DBMerge ok 134 - ../tests/check_sider_db_merge.c:Core:test_db_merge: Passed ok 135 - ../tests/check_sider_db_merge.c:Core:test_db_merge_in_line: Passed Set ok 136 - ../tests/check_sider_set.c:Core:test_set_free: Passed ok 137 - ../tests/check_sider_set.c:Core:test_set_insert: Passed ok 138 - ../tests/check_sider_set.c:Core:test_set_remove: Passed ok 139 - ../tests/check_sider_set.c:Core:test_set_union: Passed ok 140 - ../tests/check_sider_set.c:Core:test_set_intersection: Passed ok 141 - ../tests/check_sider_set.c:Core:test_set_difference: Passed ok 142 - ../tests/check_sider_set.c:Core:test_set_is_subset: Passed ok 143 - ../tests/check_sider_set.c:Core:test_set_is_equal: Passed ok 144 - ../tests/check_sider_set.c:Core:test_set_is_member: Passed Correlation ok 145 - ../tests/check_sider_correlation.c:Core:test_pearson: Passed ok 146 - ../tests/check_sider_correlation.c:Core:test_spearman: Passed ok 147 - ../tests/check_sider_correlation.c:Core:test_spearman_eq: Passed ok 148 - ../tests/check_sider_correlation.c:Core:test_spearman_permutation_test: Passed BED ok 149 - ../tests/check_sider_bed.c:Core:test_bed_header: Passed ok 150 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 151 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 152 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 153 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 154 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 155 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 156 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 157 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 158 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 159 - ../tests/check_sider_bed.c:Core:test_beds: Passed ok 160 - ../tests/check_sider_bed.c:Abort:test_open_fatal: Passed ok 161 - ../tests/check_sider_bed.c:Abort:test_chrom_fatal: Passed ok 162 - ../tests/check_sider_bed.c:Abort:test_chrom_start_fatal: Passed ok 163 - ../tests/check_sider_bed.c:Abort:test_chrom_end_fatal: Passed ok 164 - ../tests/check_sider_bed.c:Abort:test_close_fatal: Passed Blacklist ok 165 - ../tests/check_sider_blacklist.c:Core:test_blacklist_index_dump_from_gff: Passed ok 166 - ../tests/check_sider_blacklist.c:Core:test_blacklist_index_dump_from_bed: Passed ok 167 - ../tests/check_sider_blacklist.c:Core:test_blacklist_lookup: Passed Retrocopy ok 168 - ../tests/check_sider_retrocopy.c:Core:test_retrocopy: Passed Dedup ok 169 - ../tests/check_sider_dedup.c:Core:test_dedup: Passed Genotype [E::idx_find_and_load] Could not retrieve index file for '/tmp/ponga_unsorted.bam.kfdqnT' ok 170 - ../tests/check_sider_genotype.c:Core:test_genotype: Passed FASTA ok 171 - ../tests/check_sider_fasta.c:Core:test_fasta_read: Passed ok 172 - ../tests/check_sider_fasta.c:Core:test_empty_file: Passed ok 173 - ../tests/check_sider_fasta.c:Abort:test_open_fatal: Passed ok 174 - ../tests/check_sider_fasta.c:Abort:test_contig_fatal: Passed ok 175 - ../tests/check_sider_fasta.c:Abort:test_seq1_fatal: Passed ok 176 - ../tests/check_sider_fasta.c:Abort:test_seq2_fatal: Passed ok 177 - ../tests/check_sider_fasta.c:Abort:test_close_fatal: Passed VCF ok 178 - ../tests/check_sider_vcf.c:Core:test_vcf: Passed GZ ok 179 - ../tests/check_sider_gz.c:Core:test_read1: Passed ok 180 - ../tests/check_sider_gz.c:Core:test_read2: Passed ok 181 - ../tests/check_sider_gz.c:Core:test_read_long_line: Passed ok 182 - ../tests/check_sider_gz.c:Abort:test_open_fatal: Passed ok 183 - ../tests/check_sider_gz.c:Abort:test_close_fatal: Passed ok 184 - ../tests/check_sider_gz.c:Abort:test_read_fatal1: Passed ok 185 - ../tests/check_sider_gz.c:Abort:test_read_fatal2: Passed 100%: Checks: 185, Failures: 0, Errors: 0 1..185 ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 1/1 all OK 4.16s Ok: 1 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu/meson-logs/testlog.txt create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sideretro/ cd obj-i686-linux-gnu && DESTDIR=/build/reproducible-path/sideretro-1.1.6/debian/sideretro LC_ALL=C.UTF-8 ninja install [1/68] Generating config.h with a custom command [1/2] Installing files Installing src/sider to /build/reproducible-path/sideretro-1.1.6/debian/sideretro/usr/bin Installing docs/sider.1 to /build/reproducible-path/sideretro-1.1.6/debian/sideretro/usr/share/man/man1 dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sideretro' in '../sideretro_1.1.6-2_i386.deb'. dpkg-deb: building package 'sideretro-dbgsym' in '../sideretro-dbgsym_1.1.6-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../sideretro_1.1.6-2_i386.buildinfo dpkg-genchanges --build=binary -O../sideretro_1.1.6-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/84801 and its subdirectories I: Current time: Mon Apr 20 18:07:28 -12 2026 I: pbuilder-time-stamp: 1776751648 Tue Mar 18 23:44:30 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Tue Mar 18 23:44:30 UTC 2025 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Tue Mar 18 23:48:34 UTC 2025 I: Deleting $TMPDIR on ionos2-i386.debian.net. Tue Mar 18 23:48:34 UTC 2025 I: sideretro_1.1.6-2_i386.changes: Format: 1.8 Date: Mon, 17 Mar 2025 14:43:40 -0300 Source: sideretro Binary: sideretro sideretro-dbgsym Architecture: i386 Version: 1.1.6-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Daniela Moreira Mombach Description: sideretro - pipeline for detecting Somatic Insertion of DE novo RETROcopies Changes: sideretro (1.1.6-2) unstable; urgency=medium . * Source-only upload to allow testing migration. Checksums-Sha1: 083dc5a46534ffa692ba03e523424f9b8788592d 143308 sideretro-dbgsym_1.1.6-2_i386.deb 9d2377bca4376bfbd1ef22cb379a81f51cafa3b9 9037 sideretro_1.1.6-2_i386.buildinfo bac581778ab1786a55a07eb096d2e45abc207ee2 95296 sideretro_1.1.6-2_i386.deb Checksums-Sha256: 175401aba5c80d0de11024d43b0322c94efdc5b7cf6686c014909aa5030b05db 143308 sideretro-dbgsym_1.1.6-2_i386.deb 18d1e7bc6467bd94411c2cd86034560c8eebbe65bbd09f3b339e22ba4ae08a50 9037 sideretro_1.1.6-2_i386.buildinfo 40a22128c5b27f0b660c40fa0a91cec92b062c9eae82e9baf1041530140a6b1f 95296 sideretro_1.1.6-2_i386.deb Files: 051c6ecdffaa1800f62f4cacdd7d4ecc 143308 debug optional sideretro-dbgsym_1.1.6-2_i386.deb 23a492752e8fdbfa7d37cffa4b876912 9037 science optional sideretro_1.1.6-2_i386.buildinfo d16a95a98795f740ceb17a0c1c022373 95296 science optional sideretro_1.1.6-2_i386.deb Tue Mar 18 23:48:35 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_10-47064.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/sideretro_1.1.6-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/sideretro_1.1.6-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/sideretro_1.1.6-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/b1/sideretro_1.1.6-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/b2/sideretro_1.1.6-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 221ms CPU time consumed: 221ms Tue Mar 18 23:48:36 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Tue Mar 18 23:48:36 UTC 2025 I: sideretro from unstable built successfully and reproducibly on i386. Tue Mar 18 23:48:36 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Mar 18 23:48:36 UTC 2025 I: Submitting 12K b1/sideretro_1.1.6-2_i386.buildinfo.asc Tue Mar 18 23:48:37 UTC 2025 I: Submitting 12K b2/sideretro_1.1.6-2_i386.buildinfo.asc Tue Mar 18 23:48:38 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Mar 18 23:48:38 UTC 2025 I: Done submitting .buildinfo files. Tue Mar 18 23:48:38 UTC 2025 I: Removing signed sideretro_1.1.6-2_i386.buildinfo.asc files: removed './b1/sideretro_1.1.6-2_i386.buildinfo.asc' removed './b2/sideretro_1.1.6-2_i386.buildinfo.asc'