maint_debian-med package set for bullseye/armhf

• All tracked package sets for bullseye/armhf

The package set maint_debian-med in bullseye/armhf consists of 906 packages:
32 (3.5%) packages failed to build reproducibly: python-pairix segemehl dicom3tools python-anndata emboss brian libzeep metastudent-data librostlab centrifuge treeview logol hhsuite bali-phy gdcm minimap2 python-pybedtools mira jebl2 gbrowse htslib nipype pydicom macs filtlong shapeit4 simrisc libamplsolver libsbml ncbi-blast+ python-cogent mia
24 (2.6%) packages failed to build from source: nim-hts bbhash umap-learn resfinder-db python-streamz python-parasail ismrmrd# python-pbcore spades gatb-core mypy picard-tools pinfish pychopper gjh-asl-json libmaus2 quorum seqan3 nitime bustools python-skbio ivar libbiod htsjdk
111 (12.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: bio-eagle bolt-lmm pftools bowtie2 mrtrix3 obitools artemis mecat2 xenium khmer cnvkit hmmer insighttoolkit4 soapaligner bmtk shasta ncbi-vdb sra-sdk vg fis-gtm macsyfinder vsearch swarm-cluster diamond-aligner iqtree circlator simka mash consensuscore tao-json bowtie rna-star megahit soapdenovo2 kissplice soapdenovo libstatgen prokka mapsembler2 pbcopper elastix pyranges snap-aligner rapmap salmon gdpc metabat sortmerna relion infernal lambda-align2 ball seqan2 king q2-quality-filter paleomix kleborate q2-quality-control plasmidid q2-cutadapt qcumber mindthegap parallel-fastq-dump pigx-rnaseq q2-feature-table unicycler shovill pynn ginkgocadx ariba q2-metadata q2-types q2-demux pplacer cat-bat skesa trinityrnaseq q2-dada2 nifti2dicom sepp pbbam metaphlan2 biobambam2 gubbins libmmmulti libatomic-queue pbseqlib blasr q2-feature-classifier q2-alignment sight q2-taxa minia pbdagcon sambamba discosnp barrnap smrtanalysis rsem fsm-lite srst2 python-ete3 psortb proteinortho minimac4 seqsero sspace camitk bcalm gasic plastimatch
739 (81.6%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arcp arden argh artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamkit bamtools bandage bart bart-view bbmap bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brig busco bwa camp canu cassiopee cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conservation-code covtobed crac ctdconverter ctdopts ctn ctsim cwlformat cwltool cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly density-fitness dextractor dialign dialign-t dicomnifti dicomscope dipy disulfinder dnaclust dnapi drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass estscan examl exonerate fast5 fasta3 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freebayes freecontact fsa g2 galileo garli gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gsort gwama gwyddion h5sparse harvest-tools hdmf hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igdiscover igor igraph iitii imagej indelible insilicoseq invesalius ipig iva jaligner jam-lib jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive kineticstools king-probe klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align last-align lastz lefse libace-perl libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java liblemon libmems libmialm libminc libmmap-allocator libmurmurhash libmuscle libncl libnewuoa liboptions-java libpal-java libpdb-redo libpj-java libpll libpsortb libqes libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy lumpy-sv maffilter mafft mapdamage maq maqview maude mauve-aligner mcl medicalterms melting mencal metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps microbiomeutil milib minc-tools miniasm minimap mipe mirtop mlv-smile mmseqs2 mosdepth mothur mptp mrbayes mrc mriconvert mricron multiqc mummer murasaki muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr ngs-sdk nibabel nifticlib nim-kexpr nim-lapper njplot norsnet norsp nutsqlite odil odin opencfu openslide openslide-python opensurgsim optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pique pirs pixelmed pixelmed-codec pizzly placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations porechop poretools pp-popularity-contest praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prottest pscan-chip pscan-tfbs psignifit psychopy pvrg-jpeg pybel pybigwig pycoqc pycorrfit pymia pyode pyqi pyrle pyscanfcs pysurfer python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-pauvre python-pbcommand python-pipdeptree python-py2bit python-pyani python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-spectra python-sqlsoup python-sqt python-stubserver python-tinyalign python-treetime python-wdlparse python-wordcloud python-xopen pyxid pyxnat q2cli q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde skewer smalt smart-open snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spaln spdlog sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf ssake stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco survivor svim sweed swissknife tantan tao-config t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vt vtk-dicom wham-align wise wtdbg2 xdffileio xmedcon yaggo yaha yanagiba yanosim zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.