maint_debian-med package set for forky/amd64

• All tracked package sets for forky/amd64

The package set maint_debian-med in forky/amd64 consists of 910 packages:
38 (4.2%) packages failed to build reproducibly: ball cwltool odil bmtk camitk btllib dipy pydicom ncbi-blast+ mapsembler2 liblemon python-pysam consensuscore treeview gbrowse ncbi-igblast ants# nitime twopaco dicom3tools libpll macsyfinder seqan2 segemehl shapeit4 metastudent-data mrtrix3 parallel salmon filtlong emboss hmmer librostlab igraph unicycler seqan3 libcifpp libsbml
19 (2.1%) packages failed to build from source: toil genometools gdcm unifrac-tools sourmash biomaj3-core biomaj3-download seqan-raptor rapmap tracetuner raster3d freecontact staden readseq ncbi-seg amide fastlink lastz fis-gtm
853 (93.7%) packages successfully build reproducibly: abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align ampliconnoise any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-daemon biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq blasr bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brian brig busco bustools bwa bwa-mem2 camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cde cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin cl-pubmed clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med deblur delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar flye freebayes fsa fsm-lite g2 galileo garli gasic gatb-core gatk-bwamem gatk-fermilite gdpc gemma genomethreader getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hunspell-en-med hyphy icb-utils idba idseq-bench igor igv iitii illustrate imagej imbalanced-learn indelible infernal insighttoolkit5 insilicoseq invesalius ipig iqtree ismrmrd# itkadaptivedenoising itkgenericlabelinterpolator iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart kalign kallisto kaptive kineticstools king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lefse libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-seqfeature-perl libbio-db-swissprot-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-procedural-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libslow5lib libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq mash maude mauve-aligner maxflow mcaller mcl14 mecat2 medicalterms megadepth megahit megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minc-tools minia miniasm minimac4 minimap minimap2 mipe mira mirtop mlv-smile mmlib mmseqs2 mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nipy nipype njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore pigx-rnaseq piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip psignifit psortb pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynn pynwb pyode pyqi pyranges pyscanfcs python-acres python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-ihm python-intervaltree-bio python-iow python-leidenalg python-loompy python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qcumber qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rate4site raxml ray rdp-alignment rdp-readseq readerwriterqueue reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok rtax rtfilter ruby-rgfa runcircos-gui saint salmid sambamba samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm seaview seer seirsplus seqan-needle seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shasta shovill sibelia sibsim4 sickle sideretro sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smrtanalysis snakemake snap snap-aligner sniffles snippy snpeff snpomatic snpsift snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spaln spdlog spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest transrate-tools transtermhp tree-puzzle+ treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq uc-echo ugene uncalled unifrac unikmer varna vcfanno veryfasttree virulencefinder vmatch vsearch vt vtk-dicom wham-align wise wtdbg2 xdffileio xenium xmedcon xpore xxsds-dynamic yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.