maint_debian-med package set for trixie/amd64

• All tracked package sets for trixie/amd64

The package set maint_debian-med in trixie/amd64 consists of 883 packages:
40 (4.5%) packages failed to build reproducibly: librostlab hyphy libsbml libcifpp cwltool heudiconv dipy fis-gtm nitime python-pysam liblemon mapsembler2 sourmash seqan2 libhmsbeagle ncbi-blast+ treeview gbrowse gdcm iqtree twopaco dicom3tools macsyfinder libpll segemehl gatb-core metastudent-data shapeit4 odil ncbi-igblast parallel mrtrix3 igraph emboss btllib salmon pydicom filtlong hmmer kleborate
8 (0.9%) packages failed to build from source: gmap python-mne libgoby-java unifrac-tools consensuscore bmtk python-biopython sight
1 (0.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: adun.app
834 (94.5%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval aegean aeonbits-owner aevol aghermann allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi ants any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bitseq blasr bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brian brig busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cde cd-hit centrifuge cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t dicomscope discosnp disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar flye freecontact fsa fsm-lite g2 galileo garli gasic gatk-bwamem gatk-fermilite gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hunspell-en-med icb-utils idba igor igv illustrate imagej imbalanced-learn indelible infernal insighttoolkit5 insilicoseq ipig ismrmrd# itkadaptivedenoising itkgenericlabelinterpolator iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive kineticstools king king-probe kissplice klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 mecat2 medicalterms megadepth megahit megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minia miniasm minimac4 minimap minimap2 mipe mira mirtop mmlib mmseqs2 mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nipy nipype njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odin ont-fast5-api opencfu openslide openslide-python optimir orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pinfish pique pirs pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb prokka propka proteinortho prottest pscan-chip pscan-tfbs psignifit psortb pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyranges pyscanfcs python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-biom-format python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcoreP python-prefixed python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qcumber qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rapmap raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary roguenarok rsem rtax runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqan-needle seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shasta sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smalt smrtanalysis snakemake snap snap-aligner snpomatic snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spaln spdlog spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo ugene uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vsearch vt wham-align wise wtdbg2 xdffileio xenium xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.