maint_debian-med package set for trixie/amd64

• All tracked package sets for trixie/amd64

The package set maint_debian-med in trixie/amd64 consists of 890 packages:
48 (5.4%) packages failed to build reproducibly: brian camitk dipy consensuscore sight heudiconv mapsembler2 liblemon python-pysam nitime ncbi-igblast sourmash seqan2 libhmsbeagle ncbi-blast+ treeview iqtree gbrowse igraph gdcm twopaco dicom3tools libpll macsyfinder segemehl gatb-core metastudent-data shapeit4 odil parallel mrtrix3 btllib emboss salmon pydicom filtlong hmmer seqan3 kleborate tree-puzzle librostlab unicycler libsbml dcmtk bmtk libcifpp fis-gtm cwltool
6 (0.7%) packages failed to build from source: unifrac-tools beast2-mcmc sideretro jmodeltest gmap ciftilib
836 (93.9%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align ampliconnoise ants any2fasta arden argh argtable2 artemis artfastqgenerator assembly-stats assemblytics ataqv atropos augur autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast-mcmc bedops bedtools berkeley-express bifrost bioawk bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq blasr bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brig busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cde cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med deblur delly density-fitness dextractor dialign diamond-aligner discosnp disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar flye freebayes freecontact fsa fsm-lite g2 galileo garli gasic gatk-bwamem gatk-fermilite gdpc gemma genomethreader genometools genomicsdb gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hunspell-en-med hyphy icb-utils idba igor igv illustrate imagej imbalanced-learn indelible infernal insighttoolkit5 insilicoseq invesalius ipig ismrmrd# itkadaptivedenoising itkgenericlabelinterpolator iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart kallisto kaptive kineticstools king king-probe kissplice klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 mecat2 medicalterms megadepth megahit megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minc-tools minia miniasm minimac4 minimap minimap2 mipe mira mirtop mmlib mmseqs2 mothur mptp mrbayes mrc mricron multiqc murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish ncbi-acc-download ncbi-entrez-direct ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nipy nipype njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore pigx-rnaseq piler pilercr pilon pinfish pixelmed pixelmed-codec pizzly placnet plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probcons prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest pscan-chip psignifit psortb pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyranges pyscanfcs python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore# python-prefixed python-py2bit python-pyani python-pybedtools python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qcumber qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rapmap raster3d rate4site raxml ray rdp-alignment rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shasta shovill sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka simrisc ska skesa smalt smrtanalysis snakemake snap snap-aligner sniffles snippy snpeff snpomatic snpsift snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spaln spdlog+ spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed tantan tao-config tao-json t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo ugene uncalled unifrac unikmer varna vcfanno vcftools velvet veryfasttree virulencefinder vmatch volpack vsearch vt vtk-dicom wham-align wise wtdbg2 xdffileio xenium xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.