maint_debian-med package set for trixie/arm64

• All tracked package sets for trixie/arm64

The package set maint_debian-med in trixie/arm64 consists of 884 packages:
18 (2.0%) packages failed to build reproducibly: libpll hmmer libcifpp mapsembler2 ncbi-igblast emboss parallel salmon pydicom nitime kleborate dipy ncbi-blast+ librostlab mrtrix3 heudiconv igraph macsyfinder
8 (0.9%) packages failed to build from source: snpeff igv unifrac-tools picard-tools pyranges libsbml libmaus2 rapmap
38 (4.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: subarch-select iqtree soapdenovo2 wtdbg2 pftools mecat2 megahit soapdenovo bolt-lmm plink1.9 bmtk elastix libstatgen soapaligner insighttoolkit5 probabel theseus metabat cde spades sortmerna xenium fis-gtm itkgenericlabelinterpolator itkadaptivedenoising camitk unicycler biobambam2 ants shovill minimac4 psortb deblur libatomic-queue libmmmulti plastimatch gubbins sight
820 (92.8%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq blasr bowtie bowtie2 boxshade bppphyview bppsuite brian brig btllib busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circos circos-tools civetweb clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concurrentqueue conda-package-handling conda-package-streaming consensuscore conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar flye freecontact fsa fsm-lite g2 galileo garli gasic gatb-core gatk-bwamem gatk-fermilite gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hunspell-en-med hyphy icb-utils idba igor illustrate imagej imbalanced-learn indelible infernal insilicoseq ipig ismrmrd# iva jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive king king-probe kissplice klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg liblemon libmcfp libmems libmialm libminc libmjson-java libmurmurhash libncl libnewuoa liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 medicalterms megadepth megan-ce melting mencal metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minc-tools minia miniasm minimap minimap2 mipe mira mirtop mmlib mmseqs2 mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nipy nipype njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pinfish pique pirs pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plink plink2 plip poa populations poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyscanfcs python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore+ python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pysam python-pyspoa python-questplus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qcumber qrisk2 qsopt-ex qtltools quicktree quorum racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok rsem rtax runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus seqan2 seqan3 seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shapeit4 shasta sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smalt smrtanalysis snakemake snap snap-aligner sniffles snpomatic snpsift snp-sites soapsnp socket++ sorted-nearest spaced spaln spdlog spoa sprai spread-phy srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subread suitename sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo ugene uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vsearch vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.