maint_debian-med package set for trixie/arm64

• All tracked package sets for trixie/arm64

The package set maint_debian-med in trixie/arm64 consists of 882 packages:
22 (2.5%) packages failed to build reproducibly: twopaco gbrowse ncbi-blast+ macsyfinder metastudent-data dicom3tools gdcm treeview libpll hmmer libcifpp mapsembler2 ncbi-igblast parallel librostlab emboss salmon dipy pydicom nitime kleborate igraph
4 (0.5%) packages failed to build from source: libmaus2 cwltool unifrac-tools rapmap
36 (4.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: fis-gtm xenium bio-eagle soapdenovo2 subarch-select iqtree wtdbg2 pftools mecat2 megahit soapdenovo plink1.9 bolt-lmm lambda-align2 bmtk elastix libstatgen soapaligner insighttoolkit5 probabel theseus itkgenericlabelinterpolator biobambam2 ants gubbins libatomic-queue sight shovill metabat spades libmmmulti unicycler plastimatch deblur sortmerna itkadaptivedenoising
820 (93.0%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide andi any2fasta arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bowtie bowtie2 boxshade bppphyview bppsuite brian brig btllib busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming consensuscore conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar flye freecontact fsa fsm-lite g2 galileo gasic gatb-core gatk-bwamem gatk-fermilite gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hunspell-en-med hyphy icb-utils idba igor igv illustrate imagej imbalanced-learn indelible infernal insilicoseq invesalius ipig ismrmrd# iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive kineticstools king king-probe kissplice kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg liblemon libmcfp libmems libmialm libminc libmjson-java libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsbml libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maqview mash maude mauve-aligner mcaller mcl mcl14 medicalterms megadepth megan-ce melting mencal metaeuk metaphlan metaphlan2-data metastudent mhap microbegps microbiomeutil milib minc-tools minia miniasm minimap minimap2 mipe mira mirtop mmlib mmseqs2 mothur mptp mrbayes mrc mricron mrtrix3 multiqc murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib njplot norsnet norsp ntcard nthash nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore pigx-rnaseq piler pilercr pilon pinfish pique pirs pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plink plink2 plip poa populations porechop poretools prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyranges pyscanfcs pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-cooler python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pysam python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qcumber qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok rsem rtax ruby-rgfa saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus seqan2 seqan3 seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shapeit4 shasta sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka ska skesa skewer smalt snakemake snap snap-aligner sniffles snpeff snpomatic snpsift snp-sites soapsnp socket++ sorted-nearest spaced spaln spdlog spoa spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subread suitename surankco surpyvor survivor svim swarm-cluster sweed tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo ugene umis uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vsearch vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.