maint_debian-med package set for trixie/armhf

• All tracked package sets for trixie/armhf

The package set maint_debian-med in trixie/armhf consists of 898 packages:
31 (3.5%) packages failed to build reproducibly: segemehl dicom3tools twopaco gbrowse gdcm liblemon treeview libpll odil ncbi-blast+ python-pysam hmmer shapeit4 parallel metastudent-data porechop pycorrfit pyscanfcs libsbml filtlong libcifpp heudiconv nitime minimap2 libhmsbeagle dipy librostlab altree libamplsolver igraph dcmtk
24 (2.7%) packages failed to build from source: maude python-parasail gjh-asl-json unifrac-tools bifrost parsinsert seqan-raptor python-mne flye libmaus2 abpoa pyranges ugene obitools simde python-pbcore+ seqan3 kmc ncbi-igblast mcl btllib pydicom ivar bustools
139 (15.5%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 spaln swarm-cluster xenium mapsembler2 mmseqs2 soapdenovo pftools kissplice soapdenovo2 libvcflib kma libstatgen macsyfinder fastqc pbdagcon drop-seq snpeff paleomix snpsift libhttp-nio-java itkadaptivedenoising igv rna-star centrifuge vsearch seqan-needle proteinortho pbbam kraken plasmidid skesa megahit king python-skbio ncbi-vdb sra-sdk metaeuk psortb rapmap libgoby-java shovill chromhmm smrtanalysis rockhopper embassy-domsearch emboss embassy-domalign embassy-domainatrix parallel-fastq-dump mecat2 libwfa2 pizzly trinityrnaseq kallisto consensuscore artemis libmmmulti gubbins kleborate metaphlan seqsero abyss gasic camitk prime-phylo nthash wtdbg2 transdecoder srst2 busco unifrac python-iow emperor python-ete3 bmtk discosnp barrnap unicycler jellyfish fsm-lite qcumber elastix iqtree rsem spades sortmerna bio-eagle fis-gtm metabat crac probabel infernal deblur sspace plastimatch beagle ntcard pbseqlib quorum jellyfish1 kmerresistance blasr bowtie2 resfinder-db snakemake cat-bat surankco pilon shasta soapaligner htsjdk libatomic-queue sight picard-tools theseus cnvkit minimac4 itkgenericlabelinterpolator biobambam2 insighttoolkit5 subarch-select minia snap-aligner gdpc mash cde ants python-cooler ariba bolt-lmm simka diamond-aligner bowtie pbcopper bcalm gatb-core salmon mrtrix3
704 (78.4%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig bwa capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy icb-utils idba igor illustrate imagej imbalanced-learn indelible insilicoseq ipig iva jaligner jam-lib jebl2 jheatchart jmodeltest kalign kaptive king-probe klustakwik kmer kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgo-perl libgtextutils libgzstream libhac-java libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mauve-aligner maxflow mcaller mcl14 medicalterms megadepth megan-ce melting mencal metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minc-tools miniasm minimap mipe mira mirtop mmlib mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifticlib nipy nipype njplot norsnet norsp nutsqlite nxtrim odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pynwb pyode pyqi python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simrisc ska skewer smalt snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred trace2dbest tracetuner transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.