maint_debian-med package set for trixie/armhf

• All tracked package sets for trixie/armhf

The package set maint_debian-med in trixie/armhf consists of 895 packages:
36 (4.0%) packages failed to build reproducibly: libla4j-java segemehl mhap libdistlib-java dicom3tools libjung-free-java gbrowse twopaco liblemon treeview libpll pixelmed jebl2 hmmer python-pysam icb-utils libamplsolver shapeit4 librostlab parallel metastudent-data libmjson-java aeonbits-owner pyscanfcs filtlong alter-sequence-alignment libsbml pycorrfit dcmtk porechop igraph ncbi-blast+ gdcm odil nitime dipy
27 (3.0%) packages failed to build from source: bbhash libbioparser-dev ismrmrd# biojava6-live maude python-parasail gjh-asl-json unifrac-tools bifrost kmc ncbi-igblast btllib pydicom bustools ivar parsinsert seqan-needle seqan3 seqan-raptor prime-phylo python-mne flye libmaus2 abpoa python-pbcore pyranges ugene
137 (15.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 megahit mecat2 wtdbg2 elastix iqtree bio-eagle metabat probabel ncbi-vdb shasta soapaligner lambda-align2 jellyfish1 theseus insighttoolkit5 subarch-select sortmerna minia gdpc discosnp mash snap-aligner gatb-core salmon mrtrix3 bolt-lmm simka bcalm diamond-aligner bowtie pbcopper spades spaln rna-star picard-tools proteinortho nthash pbbam kraken unicycler plasmidid skesa rapmap libgoby-java shovill beagle igv chromhmm rockhopper embassy-domsearch emboss embassy-domalign embassy-domainatrix sambamba parallel-fastq-dump pbseqlib libwfa2 metaeuk consensuscore artemis libmmmulti kleborate busco ariba srst2 metaphlan gasic seqsero gubbins camitk swarm-cluster emperor obitools htsjdk transdecoder fis-gtm barrnap infernal fsm-lite bmtk rsem xenium crac mapsembler2 mmseqs2 soapdenovo sspace plastimatch pftools libgenome-model-tools-music-perl ntcard quorum kmerresistance jellyfish bowtie2 resfinder-db kallisto kissplice pizzly qcumber trinityrnaseq cat-bat surankco pilon king soapdenovo2 libvcflib sra-sdk kma libatomic-queue pysurfer sight centrifuge minimac4 libstatgen itkgenericlabelinterpolator python-iow python-cooler biobambam2 ants macsyfinder unifrac pigx-rnaseq fastqc abyss deblur pbdagcon python-ete3 vsearch python-skbio drop-seq snpeff paleomix snpsift libhttp-nio-java itkadaptivedenoising
695 (77.7%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aevol aghermann alien-hunter allelecount altree amap-align amide andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage bart-view bbmap bcftools beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy idba igor illustrate imagej imbalanced-learn indelible insilicoseq invesalius ipig iva jaligner jam-lib jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdisorder libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libkmlframework-java libleidenalg libmcfp libmems libmialm libminc libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mauve-aligner mcaller mcl mcl14 medicalterms megadepth megan-ce melting mencal metaphlan2-data metastudent metastudent-data-2 microbegps microbiomeutil milib minc-tools miniasm minimap minimap2 mipe mira mirtop mmlib mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifticlib njplot norsnet norsp nutsqlite nxtrim odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp paryfor patman patsy pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pynwb pyode pyqi python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-nanoget python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.