maint_debian-med package set for trixie/i386
Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:
- maint_debian-accessibility
- maint_debian-boot
- maint_debian-lua
- maint_debian-med
- maint_debian-ocaml
- maint_debian-on-mobile-maintainers
- maint_debian-python
- maint_debian-qa
- maint_debian-science
- maint_debian-x
- maint_pkg-android-tools-devel
- maint_pkg-erlang-devel
- maint_pkg-fonts-devel
- maint_pkg-games-devel
- maint_pkg-golang-maintainers
- maint_pkg-grass-devel
- maint_pkg-haskell-maintainers
- maint_pkg-java-maintainers
- maint_pkg-javascript-devel
- maint_pkg-multimedia-maintainers
- maint_pkg-perl-maintainers
- maint_pkg-php-pear
- maint_pkg-openstack
- maint_pkg-r
- maint_pkg-ruby-extras-maintainers
- maint_pkg-rust-maintainers
- maint_reproducible-builds
The package set maint_debian-med in
trixie/i386 consists of 857 packages:
25 (2.9%) packages
failed to build reproducibly:
nitime
dipy
liblemon
dicom3tools
hmmer
python-pysam
twopaco
gbrowse
treeview
librostlab
libpll
segemehl
metastudent-data
parallel
shapeit4
consensuscore
filtlong
libsbml
iqtree
macsyfinder
porechop
igraph
gdcm
ncbi-blast+
libcifpp
27 (3.2%) packages
failed to build from source:
pyranges
abpoa
seqan-raptor
python-mne
bbhash
libbioparser-dev
gatk-bwamem
scrm
tao-json
gjh-asl-json
unifrac-tools
flye
ugene
bifrost
libmaus2
pixelmed
python-pbcore
seqan3
pydicom
btllib
seqan-needle
probabel
prime-phylo
mcl
ncbi-igblast
minc-tools
bustools
101 (11.8%) packages
are either in depwait state, blacklisted, not for us, or cannot be downloaded:
gdpc
soapdenovo2
snap-aligner
simka
minia
discosnp
mash
wtdbg2
bcalm
gatb-core
bowtie
libgenome-model-tools-music-perl
pbcopper
diamond-aligner
spaln
libvcflib
spades
sra-sdk
ncbi-vdb
kma
soapdenovo
trinityrnaseq
libstatgen
elastix
python-cooler
swarm-cluster
soapaligner
obitools
xenium
fis-gtm
lambda-align2
shasta
bmtk
mrtrix3
salmon
mmseqs2
pftools
megahit
mapsembler2
mecat2
vsearch
quorum
fsm-lite
sspace
bowtie2
rsem
fastp
pigx-rnaseq
proteinortho
libhttp-nio-java
python-ete3
picard-tools
snpsift
insighttoolkit5
minimac4
itkgenericlabelinterpolator
fastqc
htsjdk
pilon
shovill
beast-mcmc
drop-seq
skesa
kmerresistance
parallel-fastq-dump
resfinder-db
beagle
abyss
unifrac
plasmidid
libgoby-java
nthash
ntcard
unicycler
crac
python-iow
pbbam
rockhopper
igv
surankco
kraken
pbdagcon
cat-bat
sambamba
embassy-domsearch
embassy-domalign
snpeff
emperor
embassy-domainatrix
emboss
python-skbio
metaeuk
libwfa2
rapmap
chromhmm
jellyfish1
paleomix
itkadaptivedenoising
ants
kissplice
kallisto
704 (82.1%) packages
successfully build reproducibly:
abacas
adapterremoval
adun.app
aegean
aeonbits-owner
aevol
aghermann
alien-hunter
allelecount
alter-sequence-alignment
altree
amap-align
amide
andi
any2fasta
aragorn
arden
argh
argtable2
artfastqgenerator
art-nextgen-simulation-tools
assembly-stats
assemblytics
atropos
augur
augustus
autodocksuite
autodock-vina
axe-demultiplexer
baitfisher
bali-phy
bambamc
bamclipper
bamkit
bamtools
bandage
barrnap
bart
bart-view
bbmap
bcftools
beast2-mcmc
bedops
bedtools
berkeley-express
bioawk
biobambam2
bio-eagle
biojava4-live
biojava6-live
biojava-live
biomaj3
biomaj3-cli
biomaj3-core
biomaj3-daemon
biomaj3-download
biomaj3-process
biomaj3-zipkin
bioperl
bio-rainbow
biosig
biosquid
biosyntax
bio-tradis
bio-vcf
bitseq
bolt-lmm
boxshade
brian
brig
busco
bwa
camp
capsule-maven-nextflow
capsule-nextflow
cassiopee
castxml
cct
cdbfasta
cd-hit
cgview
changeo
charls
chip-seq
chromimpute
cif-tools
circos
circos-tools
civetweb
clearcut
clonalframe
clonalframeml
clonalorigin
clustalo
clustalw
clustalx
codonw
coils
concavity
concurrentqueue
conda-package-handling
conda-package-streaming
conservation-code
covtobed
ctdconverter
ctdopts
ctffind
ctn
ctsim
cutesv
cwltest
cwltool
cycle
cyvcf2
daligner
damapper
dascrubber
dawg
dazzdb
dcm2niix
dcmstack
dcmtk
debian-med
delly
dextractor
dialign
dialign-t
dicomscope
disulfinder
dnaclust
dnapi
dnarrange
dssp
dwgsim
ea-utils
ecopcr
edfbrowser
edflib
edtsurf
eegdev
eigensoft
elph
emboss-explorer
e-mem
emmax
epcr
estscan
examl
exonerate
fast5
fastani
fastaq
fastdnaml
fastlink
fastml
fastq-pair
fasttree
fermi-lite
ffindex
figtree
fitgcp
flash
flexbar
freecontact
fsa
g2
galileo
gatk-fermilite
gemma
genometester
genomethreader
genometools
gentle
getdata
gfapy
gff2aplot
gff2ps
gffread
ggd-utils
ghmm
gifticlib
glam2
gmap
gnumed-client
gnumed-server
grabix
graphlan
grinder
gsort
gubbins
gwama
gwyddion
harmonypy
harvest-tools
hdmf
hhsuite
hinge
hisat2
hmmer2
hopscotch-map
htscodecs
htseq
htslib
hunspell-en-med
hyphy
icb-utils
idba
igor
illustrate
imagej
imbalanced-learn
indelible
infernal
insilicoseq
invesalius
ipig
ismrmrd#
iva
ivar
jaligner
jam-lib
jebl2
jheatchart
jmodeltest
kalign
kaptive
kineticstools
king-probe
klustakwik
kmc
kmer
kraken2
lagan
lamarc
lamassemble
lambda-align
last-align
lastz
lefse
libace-perl
libamplsolver
libargparse
libargs
libatomicbitvector
libbigwig
libbio-alignio-stockholm-perl
libbio-cluster-perl
libbio-coordinate-perl
libbio-das-lite-perl
libbio-db-biofetch-perl
libbio-db-embl-perl
libbio-db-hts-perl
libbio-db-ncbihelper-perl
libbio-db-seqfeature-perl
libbio-featureio-perl
libbio-graphics-perl
libbio-mage-perl
libbio-mage-utils-perl
libbiosoup-dev
libbio-tools-run-remoteblast-perl
libbio-variation-perl
libbitarray
libbpp-core
libbpp-phyl
libbpp-phyl-omics
libbpp-popgen
libbpp-qt
libbpp-raa
libbpp-seq-omics
libcereal
libchado-perl
libcolt-free-java
libctapimkt
libdisorder
libdistlib-java
libdivsufsort
libedlib
libfastahack
libflathashmap
libfreecontact-perl
libgclib
libgdf
libgenome
libgenome-perl
libgff
libgkarrays
libgo-perl
libgtextutils
libgzstream
libhac-java
libhat-trie
libhmsbeagle
libhpptools
libics
libips4o
libjloda-java
libjung-free-java
libkmlframework-java
libla4j-java
libleidenalg
libmcfp
libmems
libmialm
libminc
libmjson-java
libmurmurhash
libmuscle
libncl
libnewuoa
libomp-jonathonl
liboptions-java
libpal-java
libpj-java
libpsortb
libqes
librandom123
librcsb-core-wrapper
librdp-taxonomy-tree-java
librg-blast-parser-perl
librg-exception-perl
librg-utils-perl
librostlab-blast
libseqlib
libshrinkwrap
libsis-base-java
libslow5lib
libsmithwaterman
libsort-key-top-perl
libssw
libstreamvbyte
libtabixpp
libtecla
libtfbs-perl
libthread-pool
libvbz-hdf-plugin
libvistaio
libxdf
libzeep
libzerg
libzerg-perl
lighter
loki
ltrsift
lucy
lumpy-sv
macs
maffilter
mafft
malt
mapdamage
maq
maqview
maude
mauve-aligner
mcaller
mcl14
medicalterms
megadepth
megan-ce
melting
mencal
metabat
metaphlan2-data
metastudent
metastudent-data-2
mhap
microbegps
microbiomeutil
milib
miniasm
minimap
minimap2
mipe
mira
mirtop
mmlib
mothur
mptp
mrbayes
mrc
mricron
multiqc
mummer
murasaki
muscle
muscle3
mustang
nanofilt
nanolyse
nanook
nanopolish
nanosv
ncbi-acc-download
ncbi-entrez-direct
ncbi-seg
ncbi-tools6
neo
neobio
ngmlr
nibabel
njplot
norsnet
norsp
nutsqlite
nxtrim
odil
odin
ont-fast5-api
opencfu
openslide
openslide-python
optimir
orthanc
orthanc-dicomweb
orthanc-gdcm
orthanc-imagej
orthanc-mysql
orthanc-neuro
orthanc-postgresql
orthanc-python
orthanc-webviewer
orthanc-wsi
oscar
pairtools
pal2nal
paml
papyrus
paraclu
parafly
parasail
parsinsert
parsnp
paryfor
patman
patsy
pbsim
pcalendar
pdb2pqr
peptidebuilder
perlprimer
perm
phast
phipack
phybin
phylip
phylonium
phyml
phyutility
phyx
piler
pilercr
pinfish
pirs
pixelmed-codec
placnet
plasmidomics
plasmidseeker
plast
plink
plink1.9
plink2
plip
poa
populations
poretools
prank
predictnls
presto
primer3
prinseq-lite
proalign
probalign
probcons
proda
prodigal
profbval
profisis
profnet
profphd-utils
proftmb
progressivemauve
prokka
propka
prottest
pscan-chip
pscan-tfbs
psignifit
pullseq
pvrg-jpeg
pybel
pybigwig
pycoqc
pycorrfit
pyensembl
pyfastx
pynwb
pyode
pyqi
pyscanfcs
python-alignlib
python-bcbio-gff
python-bel-resources
python-bids-validator
python-bioblend
python-bioframe
python-biom-format
python-biopython
python-biotools
python-bx
python-cgecore
python-cgelib
python-cigar
python-cobra
python-csb
python-cutadapt
python-cykhash
python-datacache
python-deeptools
python-deeptoolsintervals
python-dendropy
python-dicompylercore
python-dnaio
python-epimodels
python-etelemetry
python-fitbit
python-geneimpacts
python-gffutils
python-gtfparse
python-hl7
python-hmmlearn
python-intervaltree-bio
python-leidenalg
python-nanoget
python-nanomath
python-pairix
python-pangolearn
python-parasail
python-pauvre
python-pbcommand
python-prefixed
python-py2bit
python-pyani
python-pybedtools
python-pycosat
python-pyfaidx
python-pymummer
python-pyspoa
python-pyvcf
python-questplus
python-ruffus
python-scitrack
python-screed
python-sqt
python-tinyalign
python-treetime
python-trx-python
python-wdlparse
pyxid
pyxnat
q2templates
qcat
qrisk2
qsopt-ex
qtltools
quicktree
quitcount
racon
radiant
ragout
rambo-k
rampler
raster3d
rate4site
raxml
ray
rdp-alignment
rdp-classifier
rdp-readseq
readerwriterqueue
readseq
recan
relacy
relion
repeatmasker-recon
reprof
resfinder
rnahybrid
roary
roguenarok
rtax
ruby-rgfa
runcircos-gui
saint
salmid
samblaster
samclip
samtools
samtools-legacy
savvy
sbmltoolbox
scoary
scrappie
scythe
seaview
seer
seirsplus
seqan2
seqkit
seqmagick
seqprep
seqtk
seqtools
seriation
setcover
sga
sibelia
sibsim4
sickle
sigma-align
sigviewer
sim4
simde
simrisc
ska
skewer
smalt
snakemake
snap
sniffles
snpomatic
snp-sites
soapsnp
socket++
sorted-nearest
spaced
spdlog
spoa
sprai
spread-phy
srf
ssake
ssshtest
stacks
staden
staden-io-lib
stringtie
subarch-select
subread
suitename
surpyvor
survivor
svim
sweed
swissknife
tantan
tao-config
t-coffee
terraphast
theseus
thesias
tiddit
tigr-glimmer
tm-align
tnseq-transit
tombo
toml11
tophat-recondition
toppred
tortoize
trace2dbest
tracetuner
transdecoder
transrate-tools
transtermhp
tree-puzzle#
treeviewx
trf
trim-galore
trimmomatic
trinculo
tvc
uc-echo
umis
uncalled
unikmer
varna
vcfanno
vcftools
velvet
velvetoptimiser
veryfasttree
virulencefinder
volpack
vt
wham-align
wise
xdffileio
xmedcon
xpore
xxsds-dynamic
yaggo
yaha
yanagiba
yanosim
A package name displayed with a bold
font is an indication that this package has a note. Visited
packages are linked in green, those which have not been visited are
linked in blue.
A #
sign after the name of a package
indicates that a bug is filed against it. Likewise, a
+
sign indicates there is a
patch available, a P
means a
pending bug while #
indicates a
closed bug. In cases of several bugs, the symbol is repeated.