maint_debian-med package set for trixie/i386

• All tracked package sets for trixie/i386

The package set maint_debian-med in trixie/i386 consists of 857 packages:
25 (2.9%) packages failed to build reproducibly: nitime dipy liblemon dicom3tools hmmer python-pysam twopaco gbrowse treeview librostlab libpll segemehl metastudent-data parallel shapeit4 consensuscore filtlong libsbml iqtree macsyfinder porechop igraph gdcm ncbi-blast+ libcifpp
27 (3.2%) packages failed to build from source: pyranges abpoa seqan-raptor python-mne bbhash libbioparser-dev gatk-bwamem scrm tao-json gjh-asl-json unifrac-tools flye ugene bifrost libmaus2 pixelmed python-pbcore seqan3 pydicom btllib seqan-needle probabel prime-phylo mcl ncbi-igblast minc-tools bustools
101 (11.8%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: gdpc soapdenovo2 snap-aligner simka minia discosnp mash wtdbg2 bcalm gatb-core bowtie libgenome-model-tools-music-perl pbcopper diamond-aligner spaln libvcflib spades sra-sdk ncbi-vdb kma soapdenovo trinityrnaseq libstatgen elastix python-cooler swarm-cluster soapaligner obitools xenium fis-gtm lambda-align2 shasta bmtk mrtrix3 salmon mmseqs2 pftools megahit mapsembler2 mecat2 vsearch quorum fsm-lite sspace bowtie2 rsem fastp pigx-rnaseq proteinortho libhttp-nio-java python-ete3 picard-tools snpsift insighttoolkit5 minimac4 itkgenericlabelinterpolator fastqc htsjdk pilon shovill beast-mcmc drop-seq skesa kmerresistance parallel-fastq-dump resfinder-db beagle abyss unifrac plasmidid libgoby-java nthash ntcard unicycler crac python-iow pbbam rockhopper igv surankco kraken pbdagcon cat-bat sambamba embassy-domsearch embassy-domalign snpeff emperor embassy-domainatrix emboss python-skbio metaeuk libwfa2 rapmap chromhmm jellyfish1 paleomix itkadaptivedenoising ants kissplice kallisto
704 (82.1%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbmap bcftools beast2-mcmc bedops bedtools berkeley-express bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-zipkin bioperl bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bolt-lmm boxshade brian brig busco bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fastani fastaq fastdnaml fastlink fastml fastq-pair fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy icb-utils idba igor illustrate imagej imbalanced-learn indelible infernal insilicoseq invesalius ipig ismrmrd# iva ivar jaligner jam-lib jebl2 jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmc kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview maude mauve-aligner mcaller mcl14 medicalterms megadepth megan-ce melting mencal metabat metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib miniasm minimap minimap2 mipe mira mirtop mmlib mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel njplot norsnet norsp nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml phyutility phyx piler pilercr pinfish pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyscanfcs python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scythe seaview seer seirsplus seqan2 seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy srf ssake ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename surpyvor survivor svim sweed swissknife tantan tao-config t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.