maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 942 packages:
45 (4.8%) packages failed to build reproducibly: libcifpp heudiconv consensuscore brian unicycler libsbml dipy libhmsbeagle python-pysam nitime seqan3 sight hyphy emboss gbrowse hmmer igraph metastudent-data macsyfinder treeview odil porechop iqtree dicom3tools mapsembler2 ball salmon libpll ncbi-blast+ seqan2 segemehl kleborate parallel gatb-core ncbi-igblast filtlong librostlab tree-puzzle pydicom liblemon twopaco shapeit4 btllib mrtrix3 gdcm
21 (2.2%) packages failed to build from source: aeonbits-owner python-cobra beast2-mcmc vg q2-feature-classifier acedb python-pbcoreP cmtk mlv-smile intake toil libatomic-queue camitk python-array-api-compat unifrac-tools gmap libhttp-nio-java biojava6-live bmtk mia pplacer
2 (0.2%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: hts-nim-tools nim-hts
874 (92.8%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi ants any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast-mcmc bedops bedtools berkeley-express bifrost bioawk biobambam2 bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bitseq blasr bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brig busco bustools bwa camp canu capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cde cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circlator circos civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med deblur delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar flye freebayes freecontact fsa fsm-lite g2 galileo garli gasic gatk-bwamem gdpc gemma genometester genomethreader genometools genomicsdb gentle gfapy gff2aplot gff2ps ggd-utils ghmm gifticlib gjh-asl-json glam2 gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htsjdk htslib hunspell-en-med icb-utils idba idseq-bench igor igv iitii illustrate imagej imbalanced-learn indelible infernal insighttoolkit5 insilicoseq invesalius ipig ismrmrd# itkgenericlabelinterpolator iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive kineticstools king king-probe kissplice klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-utils-perl libbioparser-dev libbio-procedural-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs mafft malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl14 medicalterms megadepth megahit megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib minc-tools mindthegap minia miniasm minimac4 minimap minimap2 mipe mira mirtop mmlib mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nipy nipype njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore pigx-rnaseq piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 poa populations poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit psortb pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynn pynwb pyode pyqi pyranges pyscanfcs python-alignlib python-anndata python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2-alignment q2cli q2-cutadapt q2-dada2 q2-demux q2-diversity-lib q2-emperor q2-feature-table q2-fragment-insertion q2-metadata q2-phylogeny q2-quality-control q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount quorum radiant ragout rambo-k rampler rapmap raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid sambamba samblaster samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus sepp seqan-raptor seqkit seqmagick seqprep seqsero seqtk seqtools seriation sga shasta shovill sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smalt smrtanalysis snakemake snap snap-aligner sniffles snippy snpeff snpomatic snpsift snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna sourmash spaced spades spaln spdlog spoa sprai spread-phy sra-sdk srf ssake sspace ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tipp tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo ugene umis uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vsearch vt vtk-dicom wham-align wise wtdbg2 xdffileio xenium xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.