maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 935 packages:
45 (4.8%) packages failed to build reproducibly: unicycler brian btllib python-pysam libhmsbeagle hyphy ncbi-igblast nitime igraph ants# pydicom gbrowse emboss hmmer metastudent-data macsyfinder librostlab treeview porechop dicom3tools salmon mapsembler2 ball libpll seqan2 gatb-core segemehl parallel ncbi-blast+ filtlong tree-puzzle liblemon mrtrix3 shapeit4 twopaco gdcm python-trx-python fis-gtm consensuscore bmtk dipy seqan3 heudiconv cwltool sight
16 (1.7%) packages failed to build from source: q2-feature-classifier python-mne ariba intake python-loompy umap-learn unifrac-tools psychopy jmodeltest python-cobra python-anndata vg rdp-classifier python-cogent mia pplacer
6 (0.6%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: libsbml nim-lapper pymia pysurfer imagej hts-nim-tools
868 (92.8%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta arden argh argtable2 artemis art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid bio-tradis bio-vcf bitseq blasr bowtie bowtie2 boxshade bppphyview bppsuite brig busco bwa-mem2 camitk camp canu capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cde cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute cif-tools circlator circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med deblur delly density-fitness dextractor dialign diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar flye freebayes freecontact fsa fsm-lite g2 galileo garli gasic gatk-bwamem gatk-fermilite gdpc gemma genometester genomethreader genometools genomicsdb gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hunspell-en-med icb-utils idba idseq-bench igor igv iitii illustrate imbalanced-learn indelible infernal insighttoolkit5 insilicoseq invesalius iqtree ismrmrd# itkadaptivedenoising itkgenericlabelinterpolator iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart kallisto kaptive kineticstools king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-seqfeature-perl libbio-db-swissprot-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-procedural-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdisorder libdistlib-java libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libomp-jonathonl libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki lucy lumpy-sv macs maffilter malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 mecat2 medicalterms megadepth megahit megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib minc-tools mindthegap minia miniasm minimac4 minimap minimap2 mira mirtop mlv-smile mmlib mmseqs2 mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neobio ngmlr nibabel nifticlib nipy nipype njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phybin phylonium phyml physamp phyutility phyx picard-tools picopore pigx-rnaseq piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest provean pscan-chip pscan-tfbs psignifit psortb pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pyensembl pyfastx pynn pynwb pyode pyranges pyscanfcs python-alignlib python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-alignment q2cli q2-cutadapt q2-dada2 q2-demux q2-diversity-lib q2-emperor q2-feature-table q2-fragment-insertion q2-metadata q2-phylogeny q2-quality-control q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex quicktree quitcount quorum racon radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid sambamba samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus sepp seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seriation setcover sga shasta shovill sibelia sibsim4 sickle sideretro sim4 simde simka simrisc skesa skewer smalt smrtanalysis snakemake snap snap-aligner sniffles snippy snpeff snpomatic snpsift snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna sourmash spaced spades spaln spdlog# spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks subarch-select subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast theseus thesias tiddit tigr-glimmer tipp tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo ugene umis uncalled unifrac unikmer varna vcfanno vcftools velvet veryfasttree virulencefinder vmatch volpack vsearch vt vtk-dicom wham-align wise wtdbg2 xdffileio xenium xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.