maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 960 packages:
39 (4.1%) packages failed to build reproducibly: libsbml unicycler python-pysam camitk ncbi-igblast btllib gbrowse hmmer macsyfinder metastudent-data librostlab nitime treeview porechop dicom3tools pydicom ants# libpll ncbi-blast+ segemehl parallel seqan2 salmon filtlong mrtrix3 shapeit4 twopaco liblemon mapsembler2 consensuscore jebl2 python-trx-python igraph emboss dcmtk seqan3 bmtk heudiconv dipy
38 (4.0%) packages failed to build from source: acedb vg q2-feature-classifier seqan-raptor plast pigx-rnaseq unifrac-tools thesias python-pybedtools psychopy racon genometools coils dwgsim ball sortmerna amide python-anndata primer3 mia sight fis-gtm hts-nim-tools altree pplacer nim-lapper nim-hts mosdepth soapdenovo2 volpack soapdenovo sourmash rapmap python-cogent readseq aegean ncbi-seg wtdbg2
1 (0.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: pymia
882 (91.9%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment amap-align ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augustus autodocksuite autodock-vina axe-demultiplexer bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-vcf bitseq blasr bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brian brig busco bustools bwa bwa-mem2 camp canu capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cde cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circlator circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin cl-pubmed clustalo clustalw clustalx cmtk cnvkit codonw concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med deblur delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drmaa drop-seq dssp ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar flye freebayes freecontact fsa fsm-lite g2 galileo garli gasic gatb-core gatk-bwamem gatk-fermilite gemma genometester genomethreader genomicsdb gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hunspell-en-med hyphy icb-utils idba idseq-bench igor igv iitii illustrate imagej imbalanced-learn indelible infernal insighttoolkit5 insilicoseq intake invesalius ipig iqtree ismrmrd# itkadaptivedenoising itkgenericlabelinterpolator iva ivar jaligner jam-lib jellyfish jellyfish1 jheatchart kalign kallisto kaptive kineticstools king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-seqfeature-perl libbio-db-swissprot-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-procedural-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 mecat2 medicalterms megadepth megahit megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minc-tools mindthegap minia miniasm minimac4 minimap minimap2 mipe mira mirtop mlv-smile mmlib mmseqs2 mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nim-kexpr nipy nipype njplot norsnet norsp ntcard nutsqlite nxtrim obitools odil odin ont-fast5-api opencfu openslide openslide-python orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plastimatch plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto prime-phylo prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit psortb pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pyensembl pyfastx pynn pynwb pyode pyqi pyranges pyscanfcs pysurfer python-acres python-alignlib python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgelib python-cigar python-cobra python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-ihm python-intervaltree-bio python-iow python-leidenalg python-loompy python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore python-prefixed python-py2bit python-pyani python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-alignment q2cli q2-cutadapt q2-dada2 q2-demux q2-diversity-lib q2-emperor q2-feature-table q2-fragment-insertion q2-metadata q2-phylogeny q2-quality-control q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount radiant ragout rampler raster3d rate4site raxml ray rdp-alignment rdp-readseq readerwriterqueue reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok routine-update rsem rtax rtfilter ruby-rgfa runcircos-gui saint salmid sambamba samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus sepp seqan-needle seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shasta shovill sibelia sibsim4 sickle sideretro sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smalt smrtanalysis snakemake snap snap-aligner sniffles snippy snpeff snpomatic snpsift snp-sites soapaligner soapsnp socket++ sorted-nearest spaced spades spaln spdlog spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tao-config tao-json t-coffee terraphast theseus tiddit tigr-glimmer tipp tm-align toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle+ treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq uc-echo ugene umap-learn uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch vsearch vt vtk-dicom wham-align wise xdffileio xenium xmedcon xpore xxsds-dynamic yaggo yaha yanagiba

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.