maint_debian-med package set for unstable/armhf

• All tracked package sets for unstable/armhf

The package set maint_debian-med in unstable/armhf consists of 984 packages:
27 (2.7%) packages failed to build reproducibly: metastudent-data nitime pyscanfcs pycorrfit dipy treeview dicom3tools segemehl libpll parallel hmmer gbrowse filtlong libamplsolver python-pysam shapeit4 liblemon twopaco libsbml dcmtk gdcm ncbi-blast+ librostlab python-trx-python libcifpp igraph heudiconv
39 (4.0%) packages failed to build from source: libbioparser-dev acedb ball ismrmrd# mlv-smile parsinsert intake igdiscover bbhash gjh-asl-json nim-hts maude toil python-parasail libmaus2 unifrac-tools bifrost q2cli btllib minc-tools seqan-raptor pychopper pydicom python-anndata mia ivar kmc python-mne flye abpoa pyranges ugene prime-phylo python-bcbio-gff openslide-python python-pbcore seqan3 ncbi-igblast bustools
174 (17.7%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 metabat mecat2 elastix kallisto iqtree xenium jellyfish1 libvcflib vg insighttoolkit5 soapdenovo gdpc wtdbg2 minia discosnp mash bcalm gatb-core python-loompy simka snap-aligner bowtie pbcopper bolt-lmm diamond-aligner spades spaln shasta sortmerna lambda-align2 subarch-select libgenome-model-tools-music-perl mapsembler2 salmon mrtrix3 infernal canu pftools theseus bio-eagle obitools q2-phylogeny swarm-cluster fis-gtm probabel mmseqs2 soapaligner megahit circlator smrtanalysis consensuscore srst2 jellyfish pbbam freebayes snippy resfinder-db psortb picard-tools qcumber unicycler crac gubbins htsjdk fsm-lite proteinortho rapmap seqsero gasic kleborate skesa q2-feature-classifier q2-quality-filter kmerresistance q2-metadata shovill pilon embassy-domainatrix pizzly q2-dada2 plasmidid libmmmulti rockhopper sambamba bowtie2 kissplice camitk beagle cat-bat busco biobambam2 chromhmm artemis tipp q2-cutadapt pplacer metaphlan rsem minimac4 parallel-fastq-dump metaeuk nthash q2-taxa kraken quorum q2-fragment-insertion q2-feature-table q2-quality-control sspace q2-alignment q2-demux libwfa2 libgoby-java sight q2-types q2-emperor soapdenovo2 q2-diversity-lib umap-learn emboss python-array-api-compat khmer trinityrnaseq kma libatomic-queue libstatgen itkgenericlabelinterpolator python-cooler python-iow ants mindthegap pigx-rnaseq cwltest macsyfinder macs fastqc unifrac megan-ce python-skbio deblur python-ete3 pbdagcon drop-seq sepp snpeff snpsift libhttp-nio-java paleomix itkadaptivedenoising igv bmtk ncbi-vdb sra-sdk rna-star centrifuge genomicsdb pbseqlib abyss vsearch ariba seqan-needle surankco python-cogent emperor plastimatch embassy-domsearch barrnap blasr embassy-domalign anfo ntcard king transdecoder
744 (75.6%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor iitii illustrate imagej imbalanced-learn indelible insilicoseq invesalius ipig iva jaligner jam-lib jebl2 jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv maffilter mafft malt mapdamage maq maqview mauve-aligner maxflow mcaller mcl mcl14 medicalterms megadepth melting mencal metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib miniasm minimap minimap2 mipe mira mirtop mmlib mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy nipype njplot norsnet norsp nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest provean pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pymia pynn pynwb pyode pyqi pysurfer python-alignlib python-awkward python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt vtk-dicom wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.