maint_debian-med package set for unstable/armhf

• All tracked package sets for unstable/armhf

The package set maint_debian-med in unstable/armhf consists of 973 packages:
30 (3.1%) packages failed to build reproducibly: metastudent-data pyscanfcs pycorrfit treeview dicom3tools segemehl libpll parallel hmmer gbrowse filtlong python-pysam shapeit4 liblemon twopaco gdcm ncbi-blast+ python-trx-python libcifpp heudiconv altree libhmsbeagle nitime dipy minimap2 librostlab libamplsolver libsbml dcmtk igraph
45 (4.6%) packages failed to build from source: libbioparser-dev acedb ball ismrmrd# mlv-smile parsinsert intake bbhash gjh-asl-json maude toil python-parasail libmaus2 unifrac-tools bifrost q2cli seqan-raptor pychopper python-mne flye abpoa pyranges ugene python-bcbio-gff openslide-python augur simde python-dnaio pbsim nim-hts ray cmtk pynn python-pbcore+ seqan3 ncbi-igblast bustools btllib python-anndata obitools mia kmc ivar mcl mrc
173 (17.8%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 theseus bio-eagle q2-phylogeny swarm-cluster probabel mmseqs2 soapaligner megahit kissplice soapdenovo2 trinityrnaseq kma libstatgen mindthegap macsyfinder ncbi-vdb sra-sdk metabat vg mecat2 elastix kallisto iqtree xenium bmtk discosnp libvcflib sortmerna fis-gtm soapdenovo insighttoolkit5 spades minia gdpc wtdbg2 mash bcalm simka snap-aligner gatb-core python-loompy infernal bolt-lmm diamond-aligner bowtie pbcopper jellyfish1 shasta spaln seqsero skesa q2-quality-filter q2-feature-classifier kmerresistance q2-metadata pydicom shovill pilon bowtie2 gubbins embassy-domainatrix pizzly q2-dada2 libmmmulti rockhopper sambamba plasmidid beagle biobambam2 chromhmm camitk rsem metaphlan q2-cutadapt tipp cat-bat minimac4 q2-taxa pplacer quorum artemis q2-types q2-fragment-insertion libgoby-java sight kraken libwfa2 sspace q2-feature-table parallel-fastq-dump nthash q2-quality-control q2-alignment q2-demux q2-emperor cnvkit subarch-select cde q2-diversity-lib umap-learn emboss python-array-api-compat busco mapsembler2 salmon mrtrix3 srst2 python-cooler circlator ariba unicycler prime-phylo libatomic-queue python-iow fastqc ants itkgenericlabelinterpolator blasr snippy pbdagcon jellyfish abyss barrnap smrtanalysis embassy-domsearch anfo embassy-domalign king pymia resfinder-db transdecoder consensuscore plastimatch pbbam freebayes qcumber picard-tools psortb crac htsjdk libhttp-nio-java pigx-rnaseq rna-star paleomix snpsift snpeff sepp seqan-needle pbseqlib drop-seq unifrac genomicsdb igv vsearch python-ete3 centrifuge itkadaptivedenoising canu sourmash proteinortho fsm-lite ntcard python-cogent emperor metaeuk python-skbio deblur surankco rapmap iitii kleborate gasic
725 (74.5%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact g2 galileo garli gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor illustrate imagej imbalanced-learn indelible insilicoseq invesalius ipig iva jaligner jam-lib jebl2 jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmer kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libargparse libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhpptools libics libips4o libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mauve-aligner maxflow mcaller mcl14 medicalterms megadepth megan-ce melting mencal metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib minc-tools miniasm minimap mipe mira mirtop mmlib mosdepth mothur mptp mrbayes mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy nipype njplot norsnet norsp nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp paryfor patman patsy pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest provean pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pynwb pyode pyqi pysurfer python-alignlib python-awkward python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy scoary scrappie scrm scythe seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.