maint_debian-med package set for unstable/i386

• All tracked package sets for unstable/i386

The package set maint_debian-med in unstable/i386 consists of 949 packages:
27 (2.8%) packages failed to build reproducibly: nitime dipy gbrowse ncbi-blast+ metastudent-data treeview consensuscore libpll python-pysam dicom3tools segemehl ball hmmer shapeit4 parallel filtlong liblemon twopaco porechop igraph librostlab libsbml dcmtk macsyfinder libcifpp odil gdcm
46 (4.8%) packages failed to build from source: libmaus2 pyranges bioperl-run cmtk abpoa pixelmed python-mne ugene flye libbioparser-dev acedb gatk-bwamem mlv-smile pynn scrm toil igdiscover tao-json bbhash gjh-asl-json nim-hts unifrac-tools python-pbcore intake bifrost sumalibs seqan3 q2cli mosdepth minc-tools mcl hts-nim-tools ncbi-igblast bustools sumaclust mia pplacer btllib libjung-free-java seqan-needle anfo python-anndata seqan-raptor probabel pydicom prime-phylo
137 (14.4%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: kissplice xenium salmon soapdenovo2 canu mecat2 mmseqs2 megahit gdpc jellyfish1 libvcflib insighttoolkit5 khmer wtdbg2 bcalm kma mash minia snap-aligner simka gatb-core python-loompy trinityrnaseq discosnp bowtie pbcopper spaln diamond-aligner spades libstatgen obitools pftools python-cooler praat swarm-cluster q2-phylogeny soapaligner fis-gtm soapdenovo bmtk mindthegap vg ncbi-vdb sra-sdk shasta kallisto mapsembler2 itkgenericlabelinterpolator smrtanalysis sspace python-iow crac deblur embassy-domsearch python-array-api-compat elastix picard-tools qcumber ariba resfinder-db lambda-align2 cnvkit drop-seq psortb freebayes abyss python-skbio pbdagcon embassy-domainatrix python-ete3 blasr gasic seqsero beast-mcmc q2-types q2-cutadapt kleborate nthash q2-feature-classifier q2-feature-table shovill quorum vsearch kmerresistance rapmap rsem pysurfer libmmmulti parallel-fastq-dump pbseqlib king surankco htsjdk fsm-lite unicycler python-cogent artemis paleomix pbbam proteinortho plastimatch pizzly libhttp-nio-java plasmidid emboss rockhopper sambamba ntcard beagle skesa centrifuge snpsift minimac4 tipp fastp q2-diversity-lib pigx-rnaseq q2-alignment q2-emperor bowtie2 jellyfish genomicsdb q2-taxa emperor srst2 rna-star circlator cat-bat snippy nipype pilon ants neo sight itkadaptivedenoising camitk fastqc
739 (77.9%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbmap bcftools beads beast2-mcmc bedops bedtools berkeley-express bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bolt-lmm boxshade bppphyview bppsuite brian brig busco bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr epigrass estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy icb-utils idba idseq-bench igor iitii illustrate imagej imbalanced-learn indelible infernal insilicoseq invesalius ipig iqtree ismrmrd# iva ivar jaligner jam-lib jebl2 jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmc kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maude mauve-aligner mcaller mcl14 medicalterms megadepth megan-ce melting mencal metabat metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib miniasm minimap minimap2 mipe mira mirtop mmlib mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy njplot norsnet norsp nutsqlite nxtrim odin ont-fast5-api opencfu openslide-python optimir orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plink plink1.9 plink2 plip poa populations poretools prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest provean pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyscanfcs python-alignlib python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex quicktree racon ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scythe seaview seer seirsplus seqan2 seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest sortmerna spaced spdlog spoa sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumatra surpyvor survivor svim sweed swissknife tantan tao-config t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch vt vtk-dicom wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.