maint_debian-med package set for unstable/i386

• All tracked package sets for unstable/i386

The package set maint_debian-med in unstable/i386 consists of 967 packages:
26 (2.7%) packages failed to build reproducibly: gbrowse nitime ncbi-blast+ metastudent-data treeview consensuscore libpll python-pysam dicom3tools segemehl ball parallel shapeit4 libcifpp hmmer filtlong liblemon twopaco gdcm porechop dcmtk librostlab macsyfinder libsbml igraph dipy
51 (5.3%) packages failed to build from source: q2cli seqan-raptor pyranges libmaus2 python-pbcore cmtk abpoa pixelmed heudiconv python-cykhash uncalled python-mne python-deeptools busco presto python-pybedtools ugene anfo python-anndata flye pydicom probabel seqan3 mcl mosdepth minc-tools hts-nim-tools libbioparser-dev gatk-bwamem acedb mlv-smile pynn scrm tao-json toil igdiscover bbhash ncbi-igblast gjh-asl-json nim-hts seqkit augur unifrac-tools bustools bifrost intake sumaclust prime-phylo mia pplacer btllib
155 (16.0%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: soapdenovo bmtk mindthegap ncbi-vdb sra-sdk shasta kallisto mapsembler2 elastix lambda-align2 mrtrix3 kissplice xenium soapdenovo2 salmon praat canu mecat2 mmseqs2 jellyfish1 gdpc megahit insighttoolkit5 libvcflib khmer wtdbg2 snap-aligner bcalm kma simka mash gatb-core python-loompy minia trinityrnaseq discosnp bowtie pbcopper spaln diamond-aligner spades libstatgen pftools python-cooler swarm-cluster q2-phylogeny python-skbio itkadaptivedenoising fastqc deblur python-array-api-compat metaeuk vg cnvkit drop-seq abyss vsearch sepp libatomic-queue libhttp-nio-java libmmmulti pizzly ntcard emboss pbseqlib rockhopper plasmidid sambamba rna-star king beagle igv q2-diversity-lib skesa snpsift chromhmm metaphlan fastp pigx-rnaseq tipp minimac4 ariba libgoby-java libwfa2 seqan-needle soapaligner kraken cat-bat pymia embassy-domsearch sspace embassy-domalign resfinder-db pbdagcon python-iow picard-tools smrtanalysis freebayes itkgenericlabelinterpolator psortb qcumber embassy-domainatrix crac fsm-lite snpeff q2-fragment-insertion q2-dada2 q2-demux q2-quality-filter q2-quality-control bowtie2 q2-emperor q2-alignment jellyfish srst2 emperor q2-metadata q2-taxa genomicsdb sight unicycler pilon snippy circlator camitk ants htsjdk artemis pbbam surankco proteinortho paleomix kleborate nthash python-ete3 plastimatch quorum blasr q2-feature-table seqsero q2-types q2-cutadapt gasic shovill q2-feature-classifier kmerresistance rapmap beast-mcmc parallel-fastq-dump centrifuge pysurfer rsem python-cogent unifrac umap-learn
735 (76.0%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbmap bcftools beads beast2-mcmc bedops bedtools berkeley-express bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bolt-lmm boxshade bppphyview bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastdnaml fastlink fastml fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gffread ggd-utils gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy icb-utils idba idseq-bench igor iitii illustrate imagej imbalanced-learn indelible infernal insilicoseq invesalius ipig iqtree ismrmrd# iva ivar jaligner jam-lib jebl2 jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmc kmer kraken2 lagan lamarc lamassemble last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter malt mapdamage maq maqview maude mauve-aligner maxflow mcaller mcl14 medicalterms megadepth megan-ce melting mencal metabat metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib miniasm minimap minimap2 mipe mira mirtop mmlib mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy nipype njplot norsnet norsp nutsqlite nxtrim obitools odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools predictnls primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest provean pscan-chip pscan-tfbs psychopy pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pyensembl pyfastx pynwb pyode pyqi pyscanfcs python-alignlib python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-curies python-cutadapt python-datacache python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scythe seaview seer seirsplus seqan2 seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest sortmerna spaced spdlog spoa sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumatra surpyvor survivor svim sweed swissknife tantan tao-config t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize tracetuner transdecoder transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vtk-dicom wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.